BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01670.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943577 jgi|Araly1|943577|scaffold_604121.1 1197 0.0
> Ahg943577 jgi|Araly1|943577|scaffold_604121.1
Length=779
Score = 1197 bits (648), Expect = 0.0
Identities = 731/769 (95%), Gaps = 13/769 (2%)
Strand=Plus/Plus
Query 120 AGAGTTTATTACTATGGCTTTTGATGAAGATATGAAAATGGCGTCTTTCTTAAGAGAAGA 179
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 AGAG-TTATTATTATGGCTTTTGATGAAGATATGAAAATGGCGTCTTTCTTAAGAGAAGA 68
Query 180 AGAAGAACAACACTATTCTTTATCAAGACTCTCCGTTTGTTCCAACTACGACGGCGATGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 AGAAGAACAACACTATTCTTTATCAAGACTCTCCGTTTGTTCCAACTACGACGGCGATGA 128
Query 240 AGCCGACGGTGAGTCTTCTGCTTCCGACGAGAAACGTGTTGTCCACGGCGGAGGGGAGAA 299
|||||||||||| ||||||| |||||||||||||||||| | | ||||||||| |||||
Sbjct 129 AGCCGACGGTGAATCTTCTGATTCCGACGAGAAACGTGTCGGCGGCGGCGGAGGAGAGAA 188
Query 300 ATCCATGGAGGAGCTAAATTTTTCAGATTCTGATAAAGAATCAACCGGTTGTCAATCTCT 359
||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||
Sbjct 189 ATCTATGGAGGAGCTAAATTTTTCTGATTCTGATAAAGGATCAACCGGTTGTCAATCACT 248
Query 360 CCCGGCGACACCTCCGAGACGGAGACGGCGGAGAGGCGGTGGAGGAGGAGGATATTTAGC 419
|||||||||||||| || || |||||| ||| || ||||||||||||| ||
Sbjct 249 TCCGGCGACACCTCC---AC---GA---CGGAGA--CGG-CGAAGAGGAGGATATTTGGC 296
Query 420 GGTGAGTTCTCCGGTTTCCGGCGATAAAGCTTACGCTAGCGAGAACGAAGTACAAAAGAC 479
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 GGTGAGTTCTCCTGTTTCCGGCGATAAAGCTTACGCTAGCGAGAACGAAGTTCAAAAGAC 356
Query 480 GAATAACAATCAGAGGAGAAGGAGGAGATTGAAACCGGAGTGTCCACCGTGGGTTGATAG 539
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 357 GAATAACAATCAGAGGAGCAGGAGGAGACTGAAACCGGAGTGTCCACCGTGGGTTGATAG 416
Query 540 TATGCGGAGGAGCTACGTCGGAGATGAACAGAGTAGTCACGGTGGTTACGGAGGAGGAGT 599
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 417 TATGCGGAGGAGCTACGGCGGAGATGAACAGAGTGGTCACGGTGGTTACGGAGGAGGAGT 476
Query 600 GGTGGTTGTTACGAGGCCTATAGGAGGAGGAAGGCCATTGTGTATGGATTTAGAAGAAGT 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGTGGTTGTGACGAGGCCTATAGGAGGAGGAAGGCCATTGTGTATGGATTTAGAAGAAGT 536
Query 660 CAAAGCTTGTAAAGATTTGGGGTTTGAGCTTGAACCGGGTCGGGTTTCGTATTCCGGGTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CAAAGCTTGTAAAGATTTGGGGTTTGAGCTTGAACCGGGTCGGGTTTCGTATTCCGGGTC 596
Query 720 AACGGTGGATACTAGTAGTGGCGGCAATTCTCCTATCTCTTCTAACCACCGTATTTCGAG 779
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AACGATGGATACTAGTAGTGGCGGCAATTCTCCTATCTCTTCTAACCACCGTATTTCGAG 656
Query 780 TCCCGGGGATGATCCAAAAGACGTGAAAGCGAGGCTTAAGGCGTGGGCTCAAGCTGTGGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 657 TCCCGGGGATGATCCAAAAGACGTGAAAGCGAGGCTTAAGGCGTGGGCTCATGCTGTGGC 716
Query 840 TTTTGTGTCCACTACTCATCATCAACCTCCTAATTCTTTATGATTCACT 888
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTTTGTGTCCACTACTCATCATCAACCTCCTAATTCTTTATGATTCACT 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5