BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01680.2
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490409 jgi|Araly1|490409|fgenesh2_kg.6__3543__AT4G01680.1 1720 0.0
Ahg919710 jgi|Araly1|919710|scaffold_100991.1 161 9e-39
Ahg941156 jgi|Araly1|941156|scaffold_601700.1 128 9e-29
> Ahg490409 jgi|Araly1|490409|fgenesh2_kg.6__3543__AT4G01680.1
Length=1366
Score = 1720 bits (931), Expect = 0.0
Identities = 1026/1071 (96%), Gaps = 10/1071 (1%)
Strand=Plus/Plus
Query 175 CAGAGATGTGGAAAAAGTTGTAGATTAAGATGGATAAATTATTTAAGACCAGATTTGAAG 234
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 305 CAGAGATGTGGAAAAAGCTGTAGATTACGATGGATAAATTATTTAAGACCAGATTTGAAG 364
Query 235 AGAGGAGCATTTTCTCAAGATGAAGAAAATCTCATTATTGAACTTCATGCCGTTCTTGGC 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CGAGGAGCATTTTCTCAAGATGAAGAAAATCTCATTATTGAACTTCATGCCGTTCTTGGC 424
Query 295 AATAGATGGTCTCAGATAGCTGCACAGCTTCCTGGAAGAACCGACAATGAAATCAAGAAT 354
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 425 AATAGGTGGTCTCAGATAGCTGCACAACTTCCTGGAAGAACCGACAATGAAATCAAGAAT 484
Query 355 CTTTGGAATTCTTGTTTGAAGAAGAAATTGAGGCTGAGAGGAATTGACCCGGTTACACAC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 CTTTGGAATTCTTGTTTGAAGAAGAAATTGAGGCTGAGAGGAATTGACCCGGTTACACAC 544
Query 415 AAGCTCTTAACCGAAATCGAAACCGGTACAGATGACAAAACAAAACCGGTTGAGAAGAGT 474
||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 545 AAGCTCTTAACTGAAATCGAAACCGGTACAGATGACAAACCCAAACCGGTTGAGAAGAGT 604
Query 475 CAACAGACCTACCTCGTTGAGACTGATGGCTCCTCTAGTACCACTACTTGTAGTACTAAC 534
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 605 CAACAGACCTACCTCGTTGAGACTGATGGCTCCTCTAGTACCACTACTTGCAGTACTAAC 664
Query 535 CAAAACAACAACACTGATCATCTTTATACCGGAAATTTCGGTTTTCAACGGTTAAGTCTA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CAAAACAACAACACTGATCATCTTTATACCGGAAATTTCGGTTTTCAACGGTTAAGTCTA 724
Query 595 GAAAACGGTTCAAGAATCGCAGCCGGTTCTGACCTCGGTATCTGGATTCCCCAAACCGGA 654
|||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 725 GAAAACGGTTCACGAATCGCAACCGGTTCTGACCTCGGCATCTGGATTCCCCAAACCGGA 784
Query 655 AGAAACCATCATCATCATGTCGATGAAACCATCCCTAGTGCAGTGGTACTACCCGGTTCA 714
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 785 AGAAACCATCATCATCATGTCGATGAAACCATCCCTAGTGCAGTGGTGTTACCCGGTTCA 844
Query 715 ATGTTCTCATCCGGTTTAACCGGTTATAGATCCTCCAATCTCGGTTTAATTGAATTGGAA 774
|||||||| ||| ||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 845 ATGTTCTCTTCCAGTTTAACCGGTTACAGATCATCCAATCTCGGTTTAATTGAATTGGAA 904
Query 775 AACTCATTCTCAACCGGGCCAATGATGACAGAGCATCAGCAAATTCAAGAGAGTAACTAC 834
||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 905 AACTCATTCTCTACCGGGCCAATGATGACAGAGCATCAGCAGCTTCAGGAGAGTAACTAC 964
Query 835 AACAATTCAACATTCTTTGGAAATGGGAATCTGAATTGGGGATTAACAATGGAGGAAAAT 894
||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 965 AACAATTCAACATTCTTTGGAAATGGGAATCCGAACTGGGGAATAACAATGGAGGAAAAT 1024
Query 895 CAAAATCCATTCACAATATCGAATCATTCAAATTCGTCCTTATACAGTGATATAAAATCA 954
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1025 CAAAATCCATTCACAATATCGAATCATTCAAATTCGTCGTTATACAGTGATATAAAATCA 1084
Query 955 GAGACCAAtttttttGGCACAGAGGCTACAAATGTTGGTATGTGGCCATGTAACCAGCTC 1014
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1085 GAGACCAATTTTTTTGGTACAGAGGCTACAAATGTTAGTATGTGGCCATGTAACCAGCTC 1144
Query 1015 CAGCCTCAGCAACATGCATATGGCCATATATAAATCTTCTTGTATATTATAAGGTGTGTG 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 CAGCCTCAGCAACATGCATATGGCCATATATAAATCTTCTTGTATATTATAAGGTGTGTG 1204
Query 1075 AATCTTCtttttttttt-ttctcaaatatggttttttttttttttAATGGGTTGTGTATA 1133
|||||| |||||||||| ||||||||||||| ||||||||| ||||| |||||||||
Sbjct 1205 AATCTT-TTTTTTTTTTCTTCTCAAATATGGATTTTTTTTTA---AATGGTTTGTGTATA 1260
Query 1134 TAGTTTGTGTTATATATCATTTAATTTAACAGTATTGGtttttacatttttttgttttCA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1261 TAGTTTGTGTTATATATCATTTAATTTAACAGTATTGGTTTTTACATTTTTTT-T----A 1315
Query 1194 TATTCGATGTACCTTGTGAACCACAGATTTATGGACTCGGGGATTTTGTTT 1244
|||||||||||| ||||||| ||||||||||||||||| |||||||| |||
Sbjct 1316 TATTCGATGTACTTTGTGAAGCACAGATTTATGGACTCTGGGATTTTTTTT 1366
Score = 243 bits (131), Expect = 3e-63
Identities = 137/140 (98%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAGACATTCATGTTGTTACAAACAGAAACTGAGGAAAGGACTTTGGTCTCCTGAA 60
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 ATGGGGAGACATTCATGCTGTTACAAACAGAAACTGAGGAAAGGACTTTGGTCTCCTGAA 223
Query 61 GAAGATGAGAAGCTTCTTCGTTACATCACTAAGTATGGTCATGGTTGCTGGAGCTCTGTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 GAAGATGAGAAGCTTCTTCGTTACATCACTAAGTATGGTCATGGTTGCTGGAGCTCTGTC 283
Query 121 CCTAAACAAGCTGGTACGTT 140
|||||||||||||||| |||
Sbjct 284 CCTAAACAAGCTGGTATGTT 303
> Ahg919710 jgi|Araly1|919710|scaffold_100991.1
Length=1144
Score = 161 bits (87), Expect = 9e-39
Identities = 121/137 (88%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 1 ATGGGAAGACATTCATGTTGTTACAAACAGAAACTGAGGAAAGGACTTTGGTCTCCTGAA 60
||||| |||||||| || ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 21 ATGGGGAGACATTCTTGCTGTTACAAACAAAAACTGAGGAAAGGGCTTTGGTCTCCTGAA 80
Query 61 GAAGATGAGAAGCTTCTT-CGTTACATCACTAAGT-ATGGTCATGGTTGCTGGAGCTCTG 118
|||||||||||||||||| | | ||||||| || | | || ||||| |||||||||||||
Sbjct 81 GAAGATGAGAAGCTTCTTAC-TCACATCACCAA-TCACGGCCATGGCTGCTGGAGCTCTG 138
Query 119 TCCCTAAACAAGCTGGT 135
||||||||| ||||||
Sbjct 139 TCCCTAAACTCGCTGGT 155
> Ahg941156 jgi|Araly1|941156|scaffold_601700.1
Length=1005
Score = 128 bits (69), Expect = 9e-29
Identities = 151/190 (79%), Gaps = 8/190 (4%)
Strand=Plus/Plus
Query 177 GAGATGTGGAAAAAGTTGTAGATTAAGATGGATAAATTATTTAAGACCAGATTTGAAGAG 236
||| ||||| ||||| || ||||||||||||||||||||||||||||| ||||| || ||
Sbjct 162 GAGGTGTGGTAAAAGCTGCAGATTAAGATGGATAAATTATTTAAGACCTGATTTAAAAAG 221
Query 237 AGGAGCATTTTCTCA-AG-ATGAAGAA-AATCTCATTATTGAACTTCATGCCGTTCTTGG 293
||| | |||| ||| | |||||||| || | | ||||| || |||||| |||||
Sbjct 222 AGGC-C-TTTTATCAGAATATGAAGAACAAA-TGGTCATTGATCTCCATGCCCAACTTGG 278
Query 294 CAATAGATGGTCTCAGATAGC-TGCACAGCTTCCTGGAAGAACCGACAATGAAATCAAGA 352
|||||||||||| |||| || | | || || || |||||||| || |||||||| ||||
Sbjct 279 CAATAGATGGTCAAAGATTGCCT-CTCATCTACCAGGAAGAACTGATAATGAAATAAAGA 337
Query 353 ATCTTTGGAA 362
| | ||||||
Sbjct 338 ACCATTGGAA 347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5