BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01690.1
Length=1780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943575 jgi|Araly1|943575|scaffold_604119.1 2710 0.0
Ahg946986 jgi|Araly1|946986|scaffold_703215.1 73.1 6e-12
> Ahg943575 jgi|Araly1|943575|scaffold_604119.1
Length=1662
Score = 2710 bits (1467), Expect = 0.0
Identities = 1598/1663 (96%), Gaps = 2/1663 (0%)
Strand=Plus/Plus
Query 21 TTCCGAATTCTCTGCGATTTCCATGGAGTTATCTCTTCTCCGTCCGACGACTCAATCGCT 80
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 TTCTGAATTCTCTGCGATTTCCATGGAATTATCTCTTCTCCGTCCGACGACTCAATCGCT 60
Query 81 TCTTCCGTCGTTTTCGAAGCCCAATCTCCGATTAAATGTTTATAAGCCTCTT-AGACTCC 139
|||||||||||| ||||| || ||||||||||||||||| |||||||||||| || ||||
Sbjct 61 TCTTCCGTCGTTCTCGAAACCGAATCTCCGATTAAATGTCTATAAGCCTCTTAAG-CTCC 119
Query 140 GTTGTTCAGTGGCCGGTGGACCAACCGTCGGATCTTCAAAAATCGAAGGCGGAGGAGGCA 199
||||||| ||||||||||||||||||||||||||||| ||||| | |||||||||||||
Sbjct 120 GTTGTTCGGTGGCCGGTGGACCAACCGTCGGATCTTCCAAAATTGGCGGCGGAGGAGGCA 179
Query 200 CCACCATCACGACGGATTGTGTGATTGTCGGCGGAGGTATTAGTGGTCTTTGCATCGCTC 259
||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 180 CCACCGTCACGGCGGATTGTGTGATTGTCGGCGGAGGTATCAGTGGTCTTTGCATCGCGC 239
Query 260 AGGCGCTTGCTACTAAGCATCCTGATGCTGCTCCGAATTTAATTGTGACCGAGGCTAAGG 319
||||||||||||| ||||||||| | ||||| |||||||| |||||||| ||||||||||
Sbjct 240 AGGCGCTTGCTACGAAGCATCCTAACGCTGCACCGAATTTGATTGTGACTGAGGCTAAGG 299
Query 320 ATCGTGTTGGAGGCAACATTATCACTCGTGAAGAGAATGGTTTTCTCTGGGAAGAAGGTC 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATCGTGTTGGAGGCAACATTATCACTCGTGAAGAGAATGGTTTTCTCTGGGAAGAAGGTC 359
Query 380 CCAATAGTTTTCAACCGTCTGATCCTATGCTCACTATGGTGGTAGATAGTGGTTTGAAGG 439
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTAATAGTTTTCAGCCGTCTGATCCTATGCTCACTATGGTGGTAGATAGTGGTTTGAAGG 419
Query 440 ATGATTTGGTGTTGGGAGATCCTACTGCGCCAAGGTTTGTGTTGTGGAATGGGAAATTGA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATGATTTGGTGTTGGGAGATCCTACTGCGCCAAGGTTTGTGTTGTGGAATGGGAAATTGA 479
Query 500 GGCCGGTTCCATCGAAGCTAACAGACTTACCGTTCTTTGATTTGATGAGTATTGGTGGGA 559
|||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 480 GGCCGGTTCCGTCGAAGTTAACAGACTTACCGTTCTTCGATTTGATGAGCATTGGTGGGA 539
Query 560 AGATTAGAGCTGGTTTTGGTGCACTTGGCATTCGACCGTCACCTCCAGGTCGTGAAGAAT 619
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 540 AGATTAGAGCTGGGTTTGGTGCACTTGGCATTCGACCATCACCTCCAGGTCGTGAAGAAT 599
Query 620 CTGTGGAGGAGTTTGTACGGCGTAACCTCGGTGATGAGGTTTTTGAGCGCCTGATTGAAC 679
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 CTGTTGAGGAGTTTGTACGGCGTAACCTTGGTGATGAGGTTTTTGAGCGCCTGATTGAAC 659
Query 680 CGTTTTGTTCAGGTGTTTATGCTGGTGATCCTTCAAAACTGAGCATGAAAGCAGCGTTTG 739
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 660 CGTTTTGTTCAGGTGTTTATGCGGGTGATCCTTCAAAACTGAGTATGAAAGCAGCGTTTG 719
Query 740 GGAAGGTTTGGAAACTAGAGCAAAATGGTGGAAGCATAATAGGTGGTACTTTTAAGGCAA 799
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 720 GGAAGGTTTGGAAACTAGAGCAAAATGGTGGAAGCATCATAGGTGGTACTTTTAAGGCAA 779
Query 800 TTCAGGAGAGGAAAAACGCTCCCAAGGCAGAACGAGACCCGCGCCTGCCAAAACCACAGG 859
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 780 TTCAGGAGAGGAAAAACGCTCCCAAGGCAGAGCGAGACCCGCGCCTGCCAAAACCAAAGG 839
Query 860 GCCAAACAGTTGGTTCTTTCAGGAAGGGACTTCGAATGTTGCCAGAAGCAATATCTGCAA 919
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 840 GCCAAACAGTTGGTTCTTTCAGGAAGGGACTTCGAATGTTACCAGAAGCAATATCTGCAA 899
Query 920 GATTAGGTAGCAAAGTTAAGTTGTCTTGGAAGCTCTCAGGTATCACTAAGCTGGAGAGCG 979
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 GGTTAGGTAGCAAAGTTAAGTTGTCTTGGAAGCTCTCAGGTATCACTAAGCTGGACAGCG 959
Query 980 GAGGATACAACTTAACATATGAGACTCCAGATGGTTTAGTTTCCGTGCAGAGCAAAAGTG 1039
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 960 GAGGATACAACTTAACCTATGAGACTCCAGATGGTGTAGTTTCCGTGCAGAGCAAAAGTG 1019
Query 1040 TTGTAATGACGGTGCCATCTCATGTTGCAAGTGGTCTCTTGCGCCCTCTTTCTGAATCTG 1099
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1020 TTGTAATGACTGTGCCATCTCATGTTGCAAGCGGTCTCTTGCGCCCTCTTTCTGAATCTG 1079
Query 1100 CTGCAAATGCACTCTCAAAACTATATTACCCACCAGTTGCAGCAGTATCTATCTCGTACC 1159
| |||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||
Sbjct 1080 CAGCAAATGCACTCTCAAAACTTTATTATCCACCAGTTGCAGCAGTCTCTGTCTCGTACC 1139
Query 1160 CGAAAGAAGCAATCCGAACAGAATGTTTGATAGATGGTGAACTAAAGGGTTTTGGGCAAT 1219
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1140 CGAAAGAAGCAATCCGAACAGAATGTTTAATAGATGGTGAACTAAAGGGTTTTGGGCAAT 1199
Query 1220 TGCATCCACGCACGCAAGGAGTTGAAACATTAGGAACTATCTACAGCTCCTCACTCTTTC 1279
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1200 TGCATCCGCGCACGCAAGGAGTTGAAACATTAGGAACTATATACAGCTCCTCGCTCTTTC 1259
Query 1280 CAAATCGCGCACCGCCCGGAAGAATTTTGCTGTTGAACTACATTGGCGGGTCTACAAACA 1339
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CAAATCGAGCACCGCCCGGAAGAATTTTGCTGTTGAACTACATTGGCGGGTCTACAAACA 1319
Query 1340 CCGGAATTCTGTCCAAGTCTGAAGGTGAGTTAGTGGAAGCAGTTGACAGAGATTTGAGGA 1399
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1320 CCGGGATTCTGTCCAAGTCCGAAGGTGAGTTAGTGGAAGCAGTTGACAGGGATTTGAGGA 1379
Query 1400 AAATGCTAATTAAGCCTAATTCGACCGATCCACTTAAATTAGGAGTTAGGGTATGGCCTC 1459
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1380 AAATGCTAATTAAGCCTAATTCGACTGATCCACTTAAATTAGGAGTTAGGGTATGGCCTC 1439
Query 1460 AAGCCATTCCTCAGTTTCTAGTTGGTCACTTTGATATCCTTGACACGGCTAAATCATCTC 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AAGCCATTCCTCAGTTTCTAGTTGGTCACTTTGATATCCTTGACACGGCTAAATCATCTC 1499
Query 1520 TAACGTCTTCGGGCTACGAAGGGCTATTTTTGGGTGGCAATTACGTCGCTGGTGTAGCCT 1579
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1500 TAACATCTTCGGGCTACGAAGGGCTATTTTTGGGTGGCAATTACGTTGCTGGTGTAGCCT 1559
Query 1580 TAGGCCGGTGTGTAGAAGGCGCATATGAAACCGCGATTGAGGTCAACAACTTCATGTCAC 1639
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1560 TAGGCCGGTGTGTAGAAGGCGCATATGAAACCGCGACTGAGGTCAACAACTTCATGTCAC 1619
Query 1640 GGTACGCTTACAAGTAAATGTAAAACATTAAATCTCCCAGCTT 1682
||||||||||||||| |||||||||||||||| ||| ||||||
Sbjct 1620 GGTACGCTTACAAGTCAATGTAAAACATTAAACCTCTCAGCTT 1662
> Ahg946986 jgi|Araly1|946986|scaffold_703215.1
Length=941
Score = 73.1 bits (39), Expect = 6e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 455 GAGATCCTACTGCGCCAAGGTTTGTGTTGTGGAATGGGAAATTGA 499
|||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 716 GAGATCCTACTGTGCCAAGGTTTGTGTTGTGGAATGGGAAACTGA 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66810289730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5