BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01700.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943574 jgi|Araly1|943574|scaffold_604118.1 1432 0.0
> Ahg943574 jgi|Araly1|943574|scaffold_604118.1
Length=889
Score = 1432 bits (775), Expect = 0.0
Identities = 854/892 (96%), Gaps = 6/892 (1%)
Strand=Plus/Plus
Query 1 ACAAAACACAAAAAAGAACAAATATGGAGAAACAAATCTCTCTATTGCTCTGTCTAC-TC 59
||| ||||||| ||||||| ||||||||||||||||| ||| | ||||||||||| | ||
Sbjct 1 ACACAACACAAGAAAGAACCAATATGGAGAAACAAATTTCTTTGTTGCTCTGTCT-CGTC 59
Query 60 CTCTTCATCTTCTCAATATCATCCTCTCTCCATGAAACCGAAGCTCGAAAACACAATAAA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTCTTCATCTTCTCAATATCATCCTCTCTCCATGAAACCGAAGCTCGAAAACACAATAAA 119
Query 120 TATAAACCCGCACCGATCATGAGCCTAGTCCCAAGAACTCTCTA-CGACCAAATCTTCAT 178
|||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 120 TATAAACCCGCACCGATCATGAGCCTAGTCCCAAGACCTCTCTATC-ACCAAATCTTCAT 178
Query 179 CCACAAGGACAACAACGCATGCCCTGCAAAAGGTTTCTACCCCTATGAAGCTTTCGTGGA 238
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 179 CCACAAGGACAACAACGCATGTCCTGCAAAAGGTTTCTACCCCTACGAAGCTTTTGTGGA 238
Query 239 GGCTACAAGATCCTTCCCGAAGTTCGGGAGCGTAGGAAACTTTTGGACAAGGCGACGCGA 298
||||||||| |||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct 239 GGCTACAAGGTCCTTCCCGAGGTTCGGGAGCGTAGGAAACTCTTGGACAAGGCGGCGCGA 298
Query 299 AGTGGCTGCGTTTTTGGCGCAGATATCTCACGAGACAACAGGTGGTTGGGCCACGGCACC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGTGGCTGCGTTTTTGGCGCAGATATCTCACGAGACAACAGGTGGTTGGGCCACGGCACC 358
Query 359 AGACGGACCATATGCGTGGGGATTGTGTTTTAAAGAGGAAGTGAGTCCACAGAGTAATTA 418
|||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 TGACGGACCGTACGCGTGGGGATTATGTTTTAAAGAGGAAGTGAGTCCACAGAGTAATTA 418
Query 419 TTGTGATGCTTCTAATAAGGATTGGCCTTGTGTTTCTGGCAAGTCTTACAAAGGAAGAGG 478
||||||||| ||||||| | | |||||||||||| |||| || |||||||||||||||||
Sbjct 419 TTGTGATGCCTCTAATACGCAGTGGCCTTGTGTTCCTGGAAAATCTTACAAAGGAAGAGG 478
Query 479 TCCCATTCAACTATCTTGGAATTACAATTACGGACAGGCGGGTCGAGCATTGGGTTTCGA 538
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCCCATTCAACTTTCTTGGAATTACAATTACGGACAGGCGGGTCGAGCATTGGGTTTCGA 538
Query 539 CGGTTTACAGAACCCAGAACTTGTAGCCAACAACTCCGTTTTAGCTTTCAAGACAGCTCT 598
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CGGTTTACAGAATCCAGAACTTGTAGCCAACAACTCCGTTTTAGCTTTCAAGACAGCTCT 598
Query 599 TTGGTTTTGGATGACCGAACAGACTCCTAAACCGTCCTGCCATAACGTTATGGTCAACCG 658
||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 599 TTGGTTTTGGATGACTGAACAGACTCCTAAGCCGTCCTGCCATGACGTTATGGTCAACCG 658
Query 659 ATACAGACCGACGAAAGCAGATAGAGCAGCAAACCGGACTGTCGGTTATGGTTTAGTCAC 718
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATACAGACCGACAAAAGCAGATAGAGCAGCAAACCGGACTGTCGGTTATGGTTTAGTCAC 718
Query 719 CAACATCATAAACGGCGGTTTAGAATGTGGGATTCCAGGAGATGGACGGGTCACTGACCG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 719 CAACATCATAAACGGCGGTTTAGAATGTGGGATTCCAGGAGATGGACGGGTCAGTGACCG 778
Query 779 GGTCGGGTATTTCCAAAGATACGCTCAGTTGTTTAAAGTCACCACAGGACCTAATTTAGA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGTCGGGTATTTCCAAAGATACGCTCAGTTGTTTAAAGTCACCACAGGACCTAATTTAGA 838
Query 839 CTGCGAGAACCAAAGACCCTTCTCCTAAATATAACTATAA-CTCAAATCTAT 889
|||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 839 CTGCGAGAACCAAAGACCCTTCTCCTAAAT-TAACTATAAACTCAAATCTAT 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5