BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01710.1
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490565 jgi|Araly1|490565|fgenesh2_kg.6__3699__AT4G01710.1 682 0.0
Ahg496759 jgi|Araly1|496759|fgenesh2_kg.8__2575__AT5G65274.1 418 2e-116
> Ahg490565 jgi|Araly1|490565|fgenesh2_kg.6__3699__AT4G01710.1
Length=499
Score = 682 bits (369), Expect = 0.0
Identities = 408/427 (96%), Gaps = 1/427 (0%)
Strand=Plus/Plus
Query 22 GAATGGCAGAATTCGTTGAAGCTGATAACGCAGAAGCAATAATCGCGAGGATCGAAACCA 81
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 2 GAATGGCAGAATTCGTTGAGGCTGATAATGCAGAAGCAATAATCGCGAGGATCGAAACCA 61
Query 82 AATCGAGGAAGATTGAAAGCCTACTCAAACAGTACAAACATGTAGAAGCTTTGAAAACGG 141
||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 62 AATCGCGGAAGATTGAAAGCTTACTCAAACAGTACAAACATGTCGAAGCTTTGAAAACGG 121
Query 142 CTCTTGAAGGTTCGCCTCCGAAAACTCGCGATGAACGTTGCAAGTCGGCTAATTGGATAG 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CTCTTGAAGGTTCGCCTCCGAAAACTCGCGATGAACGTTGCAAGTCGGCTAATTGGATAG 181
Query 202 TTGTGCACAGAGCTTTAATGGCCATTAAGGATATTGACGGAATGCTCAATGCTCTTGATG 261
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 182 TTGTGCACAGAGCTATAATGGCCATAAAGGATATTGACGGAATGCTCAATGCTCTTGATG 241
Query 262 TCGAATATTACGACATTCTCATGAAGTACTTGTACAGAGGACTTTCTACTGGGGACCGAC 321
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 242 CCGAATATTACGACATTCTCATGAAGTACTTGTACAGAGGCCTTTCTACTGGCGACCGAC 301
Query 322 CCACCTGCGATCAGTGCCTGAAGATTCACGAGAAACTCACTGAGAGAGCTGGTCTCGGTT 381
||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||
Sbjct 302 CCACCTGCGATCAGTGCTTGAAGATTCATGAGAAACTCACAGAGAGAGCTGGTCTCGGTT 361
Query 382 GCATTCTCCGATGTCTTACTGATACCATCAACACCGTTTGATCCATCATTCCCTCTTATG 441
|||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||| |||
Sbjct 362 GCATTCTCCGCTGTCTTACTGATACCATAAACACCGTTTGATCCATGATTGCCTCTAATG 421
Query 442 TATTATT 448
||| |||
Sbjct 422 TAT-ATT 427
> Ahg496759 jgi|Araly1|496759|fgenesh2_kg.8__2575__AT5G65274.1
Length=405
Score = 418 bits (226), Expect = 2e-116
Identities = 329/378 (87%), Gaps = 10/378 (3%)
Strand=Plus/Plus
Query 36 GTTGAAGCTGATAACGCAGAA-GCAATAATCGCGAGGATCGAAACCAAATCG-AGGAAGA 93
|||||||||||||| ||| || | |||||| || |||||||||||||||||| | |||||
Sbjct 22 GTTGAAGCTGATAATGCA-AATGAAATAATGGCAAGGATCGAAACCAAATCGCA-GAAGA 79
Query 94 TTGAAAGCCTACTCAAACAGTACAAACATGTAGAAGCTTTGAAAACGGCTCTTGAAGGTT 153
|||||||| |||||||||| ||||||||||| |||||| ||||||| |||||||| ||||
Sbjct 80 TTGAAAGCTTACTCAAACACTACAAACATGTCGAAGCTCTGAAAACAGCTCTTGATGGTT 139
Query 154 CGCCTCCGAAAACTCGCGATGAACGTTGCAAGTCGGCTAATTGGATAGTTGTGCACAGAG 213
||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 CGCCTTTGACAACTTATGATGAACGTTGCAAGTCGGCTAATTGGATAGTTGTGCACAGAG 199
Query 214 CTTTAATGGCCATTAAGGATATTGACGGAATGCTCAATGCTCTTGATGTCGAATATTACG 273
|| | ||||| || |||||||| ||||||||||| ||| |||||| || ||| |||||||
Sbjct 200 CTATCATGGCGATAAAGGATATCGACGGAATGCTAAATTCTCTTGCTGCCGAGTATTACG 259
Query 274 ACATTCTCATGAAGTACTTGTACAGAGGACTTTCTACTGGGGACCGA-CCCACCTGCGAT 332
|||||||||||||||||||||| ||||| ||||| |||||| || || ||||| |||||
Sbjct 260 ACATTCTCATGAAGTACTTGTATAGAGGTCTTTCGACTGGGAAC-GAACCCACATGCGAA 318
Query 333 CAGTGCCTGA-AGATTCACGAGAAACTCACT-GAGAGAGCTGGTCTCGGTTGCATTCTCC 390
|| || ||| | |||||||||||||| | | |||||||||||||||||||||||||| |
Sbjct 319 CAATGTTTGATA-ATTCACGAGAAACTAA-TAGAGAGAGCTGGTCTCGGTTGCATTCTGC 376
Query 391 GATGTCTTACTGATACCA 408
| ||||||| ||||||||
Sbjct 377 GTTGTCTTAGTGATACCA 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21061885128
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5