BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01720.1
Length=1833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490404 jgi|Araly1|490404|fgenesh2_kg.6__3538__AT4G01720.1 2300 0.0
> Ahg490404 jgi|Araly1|490404|fgenesh2_kg.6__3538__AT4G01720.1
Length=1603
Score = 2300 bits (1245), Expect = 0.0
Identities = 1451/1548 (94%), Gaps = 23/1548 (1%)
Strand=Plus/Plus
Query 2 TCTCTATCTATCTCTCTTTGTCTGCAAATGGAAGAACATATTCAAGATCGCCGTGAAATT 61
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTATCTCTCTTTGTCTGCAAATGGAAGAACATATTCAAGATCGCCGTGAAATT 60
Query 62 GCGTTCTTACACTCAGGAGAATTTCTCCACGGAGATTCTGACTCAAAGGATCATCAACCG 121
|||||| ||||||| || ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 61 GCGTTCCTACACTCCGGTGAATTTCTCCAGGGAGATTCCGACTCAAAGGATCATCAACCG 120
Query 122 AACGAGTCTCCGG-T--GGAACGTCATCACGAGTC-GTCTATCAAAGAAGTTGATTTCTT 177
|| |||||||||| | ||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 121 AATGAGTCTCCGGATGAGGAACATCATCACGAG-CAGTCTATCAAAGAAGTTGATTTCTT 179
Query 178 CGCTGCTAAAAGTCAGCC-GTTTGATCTTGGTCATGTGAGAACAACGACGATCGTTGGAT 236
||| || |||||||| || | |||||||||||||||||||| ||| ||||||||||||
Sbjct 180 CGCAGCCAAAAGTCA-CCGGAGCGATCTTGGTCATGTGAGAACGACGTCGATCGTTGGAT 238
Query 237 CATCTGGTTTTAATGATGGATTAGGTTTGGTAAATTCATGTCATGGAACATCAAGCAATG 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 CATCTGGTTTTAATGATGGATTAGGTTTGGTAAATTCATGTCATGGAACATCAAGCGATG 298
Query 297 ATGGCGATGACAAAACCAAAACTCAAATTAGTAGACTGAAGTTGGAGCTAGAGAGGCTTC 356
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 ATGGCGATGACACAACCAAAACTCAAATTAGTAGACTGAAATTGGAGCTAGAGAGGCTTC 358
Query 357 ACGAGGAGAATCACAAACTGAAGCATTTATTAGATGAGGTCAGTGAGAGTTACAACGACC 416
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACGAGGAAAATCACAAGCTGAAGCATTTATTAGATGAGGTCAGTGAGAGTTACAACGACC 418
Query 417 TCCAAAGAAGAGTTTTGTTAGCAAGACAAACACAAGTGGAAGGTCTTCATCATAAACAAC 476
||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 419 TCCAAAGAAGAGTTTTGTTGGCAAGACAAACACAAGTGGAAGGTC-T--TCATAAACAAC 475
Query 477 ATGAGG-A--TGTACCTCAAGCTGGTTCCTCACAAGCTCTAGAGAACAGAAGACCAAAGG 533
|||||| | |||||| ||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 476 ATGAGGTACTTGTACCCCAAGCTGGTTCCTCACAAGCTCTGGAGGACAGAAGACCATTGG 535
Query 534 ATATGAACCATGAAACTCCGGCCACCACCTTGAAACGACGGTCTCCAGACGACGTGGATG 593
|||||||| |||||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 536 ATATGAACAATGAAACTCCGGCCACCACCTTGAAACGACGGACTCCGGACGATGTGGATG 595
Query 594 GTCGTGATATGCACCGAGGATCACCAAAAACTCCTCGAATAGACCAAAACAAGAGTACTA 653
||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 596 ATCGTGATATGCACCGAGGATCACCAAAAACTCCAAGATTAGACCAAAACAGGAGTACTA 655
Query 654 ATCATGAAGAACAACAAAACCCTCATGATCAATTACCCTATAGAAAAGCTAGGGTTTCCG 713
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 656 ATCATGAAGAACAACAAAACCCTCATGATCAATTACCCTTTAGAAAAGCTAGGGTTTCCG 715
Query 714 TTAGAGCTAGATCTGATGCCACTACGGTAAATGACGGATGTCAATGGAGAAAATACGGTC 773
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 716 TTAGAGCTAGATCTGATGCCACTACGGTAAATGACGGATGTCAGTGGAGAAAATACGGTC 775
Query 774 AGAAAATGGCGAAAGGGAATCCATGTCCTCGCGCTTATTATCGTTGCACCATGGCCGTTG 833
|||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct 776 AGAAAATGGCAAAAGGGAATCCATGTCCTCGAGCTTACTATCGTTGCACTATGGCTGTTG 835
Query 834 GATGTCCTGTCCGTAAACAGGTCCAACGATGCGCGGAGGATACAACTATCTTGACAACAA 893
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 836 GATGTCCTGTCCGTAAACAGGTACAACGATGCGCCGAGGATACAACTATCTTGACCACAA 895
Query 894 CGTACGAAGGAAACCATAACCATCCTCTTCCCCCGTCAGCCACAGCCATGGCTGCAACCA 953
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 896 CGTACGAAGGAAACCATAACCATCCTCTTCCACCGTCAGCCACCGCCATGGCTGCAACCA 955
Query 954 CCTCCGCCGCAGCAGCCATGCTCTTATCAGGCTCCTCCTCCAGCAACCTCCACCAAACAC 1013
| ||||| ||||| |||||||||||||| |||||| || |||||||| |||| |||||||
Sbjct 956 CTTCCGCTGCAGCCGCCATGCTCTTATCTGGCTCCACCACCAGCAACTTCCATCAAACAC 1015
Query 1014 TCTCTAGCCCCTCCGCCACGTCATCATCATCCTTCTACCATAACTTCCCATACACCTCCA 1073
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1016 TCTCTAGCCCCTCCGCCACGTCATCATCTTCCTTCTACCATAACTTCCCATACACTTCCA 1075
Query 1074 CAATCGCAACACTCTCTGCCTCAGCTCCTTTCCCCACCATAACCTTAGACCTCACCAACC 1133
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CAATTGCCACACTCTCCGCCTCAGCTCCTTTCCCCACCATAACCTTAGACCTCACCAACC 1135
Query 1134 CACCTCGACCGCTACAACCGCCACCGCAGTTTCTAAGCCAGTATGGTCCCGCCGCGTTTT 1193
| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1136 CGCCTCGACCGCTACAACCGCCACAGCAGTTTCTGAGCCAGTATGGTCCCGCCGCGTTTA 1195
Query 1194 TACCAAACGCTAATCAAATTAGGTCTATGAATAATAATAACCAGCAGTTATTAATACCTA 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TACCAAACGCTAATCAAATTAGGTCTATGAATAATAATAACCAGCAGTTATTAATACCTA 1255
Query 1254 ATTTGTTTGGCCCACAAGCCCCACCACGTGAAATGGTCGATTCAGTTAGGGCTGCGATTG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ATTTGTTTGGCCCACAAGCCCCACCACGTGAAATGGTCGATTCAGTTAGGGCTGCGATTG 1315
Query 1314 CGATGGATCCGAACTTCACGGCGGCACTTGCGGCCGCGATCTCAAACATTATCGGAGGAG 1373
| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1316 CAATGGATCCGAATTTCACGGCGGCGCTTGCGGCGGCGATCTCAAACATTATCGGAGGAG 1375
Query 1374 GTAATAACGACAACAATAATAATACTGATATTAATGATAACAAGGTTGATGCAAAAAGTG 1433
||||||||||||| ||||||||| ||||||||| |||| ||||||||||| |||||||
Sbjct 1376 GTAATAACGACAATAATAATAAT---GATATTAATAATAATAAGGTTGATGCGAAAAGTG 1432
Query 1434 GAGGGAGTAGTAACGGAGATTCGCCACAGCTTCCTCAGTCTTGCACCACTTTCTCTACAA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GAGGGAGTAGTAACGGAGATTCGCCACAGCTTCCTCAGTCTTGCACCACTTTCTCTACAA 1492
Query 1494 ACTAATTT-TACT-ACCat-tattatatgttatc-ttattatatatta 1537
|||||||| | || | || ||| ||||||||| |||||||||||||
Sbjct 1493 ACTAATTTAT-CTTAT-ATATAT-ATATGTTATTATTATTATATATTA 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68829072715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5