BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01730.1 Length=1527 Score E Sequences producing significant alignments: (Bits) Value Ahg943572 jgi|Araly1|943572|scaffold_604116.1 2422 0.0 > Ahg943572 jgi|Araly1|943572|scaffold_604116.1 Length=1571 Score = 2422 bits (1311), Expect = 0.0 Identities = 1458/1530 (95%), Gaps = 6/1530 (0%) Strand=Plus/Plus Query 1 ATGACGAGAAGACGCCATGGCTGGCAACGACCATTACACCCTTTACAGATTGTGGGAGCT 60 ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 21 ATGACGAGACGACGCCATGGCTGGCAACGACCATTACACCCATTACAGATTGTGGGAGCT 80 Query 61 GTTATATATAGTGTTCTGGTGGCAGCCTTTTATGTATTCCTCGGGTTTTTCTTGGGGAAT 120 ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 81 GTTATATATAGTGTTCTGGTGGCAGCCTTTTATGTCTTCCTCGGGTTTTTCCTGGGGAAT 140 Query 121 CGAATAGCTGTTATCGCGCTTCTTTCGGTTTTCTCCTCTGTGGCGGTTTCGGTTATAGTT 180 ||||||||| |||| ||||||||||||||| ||| | |||||||||||||||||||||| Sbjct 141 CGAATAGCTAATATCTCGCTTCTTTCGGTTTACTCGTTTGTGGCGGTTTCGGTTATAGTT 200 Query 181 TTATTCGTTAGGTGTACTGCGATTGATCCCACGGATAAGACTAGTGCTAAGAAAAAGAGA 240 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 201 TTGTTCGTTAGGTGTACTGCGATTGATCCTACGGATAAGACTAGTGCTAAGAAAAAGAGA 260 Query 241 AAGGATAAATCCAAAGGGGTCTTGATGAAGCTGAGAGTCAAGGTTGTTCTGAGTCAAGTT 300 |||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||| Sbjct 261 AAGGCTAAATCCAAAGCAGTCTTGATGAAGCTGAGAGTCAAGGTTGTTTTAAGTCAAGTT 320 Query 301 GTTGTGAGGTTTTTCAGGAGATTAGAGAGGAAA-ATCTTAAGGAATTTTCTTAGAAGAAC 359 |||||||||||||||||||||||||||| |||| ||||| || |||||||| ||| | || Sbjct 321 GTTGTGAGGTTTTTCAGGAGATTAGAGA-GAAAGATCTTGAGAAATTTTCTCAGACGTAC 379 Query 360 TTATCTGGATCCATGGAAAAGCAGTGTGCAGCTAGAACCACTTCTTCCATTTCCACTTGT 419 ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 380 GTATTTGGATCCATGGAAAAGCAGTGTGCAGCTAGAACCACTCCTTCCATTTCCACTTGT 439 Query 420 TATGAAAGATGATGATTCTGTTACACCTGATCCTAAAGAGGAAGATGATATCTCTTATTG 479 ||||||||||||||| |||||||||| |||||||| || |||||||||||||||||||| Sbjct 440 CATGAAAGATGATGATCCTGTTACACCAGATCCTAAGGAAGAAGATGATATCTCTTATTG 499 Query 480 TTCACTTTGTGATTTAGAGGTTAAACGCAGCAGTAAGCATTGCAGGACATGTAACCGGTG 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500 TTCACTTTGTGATTTAGAGGTTAAACGCAGCAGTAAGCATTGCAGGACATGTAACCGGTG 559 Query 540 TGTCGAAGGGTTTGATCACCATTGTAGGTGGCTTAATAACTGCGTTGGGAAAAAGAATTA 599 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 560 TGTCGAAGGGTTTGATCACCATTGCAGGTGGCTTAACAACTGCGTTGGGAAAAAGAATTA 619 Query 600 CACGACGTTTATACTCCTGATGGTTTTCGTCTTGCTTATGCTAATAATAGAAGGTGGAAC 659 ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 620 CACGACGTTCATACTCCTAATGGTTTTCGTCTTGCTCATGCTAATAATAGAAGGTGGAAC 679 Query 660 AGCTC-TTGCCGTATTTGTCAGATGTTTTGTGGACAAGAAAGGAATGGAAATGGAATTGA 718 || | ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| Sbjct 680 TGC-CATTGCCGTATTTGTCAGATGTTTTGTGGACAAGAAAGGGATGGGAATCGAATTGA 738 Query 719 AGAGAAGGCTTTATGTAGAGTTCCCTCAATGGGCTCTTGCTACAATATCTATTATCTTGG 778 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 739 AGAGAAGGCTTTATGTAGAGTTCCCTCAATGGGCTCTTGCTACAATATCTGTTATCTTGG 798 Query 779 TCTTGTTCACGGCTTATGGCTCAGCCGCCATGGGGCAGCTTTTCCTCTTCCATGTAGTTC 838 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 TCTTGTTCACGGCCTATGGCTCAGCCGCCATGGGGCAGCTTTTCCTCTTCCATGTAGTTC 858 Query 839 TCATAAGAAAGGGGATGAGAACATATGACTACATATTAGCGATGAAGGAGGAGAATCAAT 898 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 859 TCATAAGAAAGGGGATGAGAACATATGACTATATATTAGCAATGAAGGAGGAGAATCAAT 918 Query 899 TTACAGAAGTGGACCCTTTTGATGAATTAGATTCGTCTTCAGATGAAAGCTCAGATTTTG 958 || |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 919 TTGCAGAAGTGGATCCTTTTGATGAATTAGATTCATCTTCAGATGAAAGCTCGGATTTTG 978 Query 959 ATTCGCCTGAAAGATTAAGACCAACGTTTATCTCCAAGTTTATGTGCAGGAAAGCAAATG 1018 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 979 ATTCGCCGGAAAGATCAAGACCAACGTTTATCTCCAAGTTTATGTGCAGGAAAGCAAATG 1038 Query 1019 AGAATCAGCAGAGACTATCCATAAAAATAGAAGGAGATGAACAGT-CACCTTCTTCCACG 1077 |||||||||||||||| || |||||||||||||||||||||| || |||||||||||||| Sbjct 1039 AGAATCAGCAGAGACTGTCGATAAAAATAGAAGGAGATGAAC-GTTCACCTTCTTCCACG 1097 Query 1078 CTGATCAACAAGAAACCGGGGTTTCATGTAAGCATAAACCCATGGAAACTGATAACATTA 1137 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1098 GTGATCAACAAGAAACCGGGTTTTCATGTAAGCATAAACCCATGGAAACTGATAACATTA 1157 Query 1138 AGCAGTGAAAAGGCTCTACAAGCAGCTGAGAAAGCAAAGGAAAGACTGAGGAAGACGAAA 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1158 AGCAGTGAAAAGGCTCTACAAGCAGCTGAGAAAGCAAAGGAAAGACTGAGGAAGGCGAAA 1217 Query 1198 CCAGTTTCCGGGACTGAAGAAAATTCACTTAAGCCACTTCCATTAGAGACCAAATTCGGA 1257 |||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 1218 CCAGTTTCCGGGGCTGAAGAAGATTCACTTAAGCCACTTCCATTAGAGACGAAATTCGGA 1277 Query 1258 CTTTTGTTAGATCCTGACAATAACAACACTGTGTTGCAACCATCAACAACTGCAGCAGTA 1317 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1278 CTTTTGTTAGATCCTGACAATAACAACACTGTGTTGCCACCATCAACAACTGCAGCAGTA 1337 Query 1318 AAGCTTCAGGTTTCACCTGGAAGATTCTCAAGCCCACGAAGAAGGTTCTCAGGCTCTTCA 1377 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1338 AAGCTTCAGGTTTCACCTGGAAGATTCTCAAGCCCAAGAAGAAGGTTCTCAGGCTCTTCA 1397 Query 1378 TCTTCAACTGTGCCTTCGCCGAAGCAAAAATACAGAACTAACTTTGACTTGAAGCTAACT 1437 |||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| Sbjct 1398 TCTTCAACTGTGCCATCACCGAAGCAAAAATACAGAAGTAACTTTGACTTGAAGCTAACT 1457 Query 1438 GAAGTCTCTAGGGAGCTGGAAAGTTACATCTCAAGACAGGTTTTATGTTCTGTGATAAAA 1497 ||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||| Sbjct 1458 GAAGTCTCTAGAGAGCTTGAAAGTTACATCTCAAGACAGGTTTTGTGTTCTGTAATAAAA 1517 Query 1498 CAAGATGGAAGTGAAGCATCACCAAGATAA 1527 |||||||||||||||||||||||||||||| Sbjct 1518 CAAGATGGAAGTGAAGCATCACCAAGATAA 1547 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57173457745 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5