BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01730.1
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943572 jgi|Araly1|943572|scaffold_604116.1 2422 0.0
> Ahg943572 jgi|Araly1|943572|scaffold_604116.1
Length=1571
Score = 2422 bits (1311), Expect = 0.0
Identities = 1458/1530 (95%), Gaps = 6/1530 (0%)
Strand=Plus/Plus
Query 1 ATGACGAGAAGACGCCATGGCTGGCAACGACCATTACACCCTTTACAGATTGTGGGAGCT 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 21 ATGACGAGACGACGCCATGGCTGGCAACGACCATTACACCCATTACAGATTGTGGGAGCT 80
Query 61 GTTATATATAGTGTTCTGGTGGCAGCCTTTTATGTATTCCTCGGGTTTTTCTTGGGGAAT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 81 GTTATATATAGTGTTCTGGTGGCAGCCTTTTATGTCTTCCTCGGGTTTTTCCTGGGGAAT 140
Query 121 CGAATAGCTGTTATCGCGCTTCTTTCGGTTTTCTCCTCTGTGGCGGTTTCGGTTATAGTT 180
||||||||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 141 CGAATAGCTAATATCTCGCTTCTTTCGGTTTACTCGTTTGTGGCGGTTTCGGTTATAGTT 200
Query 181 TTATTCGTTAGGTGTACTGCGATTGATCCCACGGATAAGACTAGTGCTAAGAAAAAGAGA 240
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 201 TTGTTCGTTAGGTGTACTGCGATTGATCCTACGGATAAGACTAGTGCTAAGAAAAAGAGA 260
Query 241 AAGGATAAATCCAAAGGGGTCTTGATGAAGCTGAGAGTCAAGGTTGTTCTGAGTCAAGTT 300
|||| ||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 261 AAGGCTAAATCCAAAGCAGTCTTGATGAAGCTGAGAGTCAAGGTTGTTTTAAGTCAAGTT 320
Query 301 GTTGTGAGGTTTTTCAGGAGATTAGAGAGGAAA-ATCTTAAGGAATTTTCTTAGAAGAAC 359
|||||||||||||||||||||||||||| |||| ||||| || |||||||| ||| | ||
Sbjct 321 GTTGTGAGGTTTTTCAGGAGATTAGAGA-GAAAGATCTTGAGAAATTTTCTCAGACGTAC 379
Query 360 TTATCTGGATCCATGGAAAAGCAGTGTGCAGCTAGAACCACTTCTTCCATTTCCACTTGT 419
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 380 GTATTTGGATCCATGGAAAAGCAGTGTGCAGCTAGAACCACTCCTTCCATTTCCACTTGT 439
Query 420 TATGAAAGATGATGATTCTGTTACACCTGATCCTAAAGAGGAAGATGATATCTCTTATTG 479
||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||
Sbjct 440 CATGAAAGATGATGATCCTGTTACACCAGATCCTAAGGAAGAAGATGATATCTCTTATTG 499
Query 480 TTCACTTTGTGATTTAGAGGTTAAACGCAGCAGTAAGCATTGCAGGACATGTAACCGGTG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TTCACTTTGTGATTTAGAGGTTAAACGCAGCAGTAAGCATTGCAGGACATGTAACCGGTG 559
Query 540 TGTCGAAGGGTTTGATCACCATTGTAGGTGGCTTAATAACTGCGTTGGGAAAAAGAATTA 599
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 560 TGTCGAAGGGTTTGATCACCATTGCAGGTGGCTTAACAACTGCGTTGGGAAAAAGAATTA 619
Query 600 CACGACGTTTATACTCCTGATGGTTTTCGTCTTGCTTATGCTAATAATAGAAGGTGGAAC 659
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 620 CACGACGTTCATACTCCTAATGGTTTTCGTCTTGCTCATGCTAATAATAGAAGGTGGAAC 679
Query 660 AGCTC-TTGCCGTATTTGTCAGATGTTTTGTGGACAAGAAAGGAATGGAAATGGAATTGA 718
|| | ||||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 680 TGC-CATTGCCGTATTTGTCAGATGTTTTGTGGACAAGAAAGGGATGGGAATCGAATTGA 738
Query 719 AGAGAAGGCTTTATGTAGAGTTCCCTCAATGGGCTCTTGCTACAATATCTATTATCTTGG 778
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 739 AGAGAAGGCTTTATGTAGAGTTCCCTCAATGGGCTCTTGCTACAATATCTGTTATCTTGG 798
Query 779 TCTTGTTCACGGCTTATGGCTCAGCCGCCATGGGGCAGCTTTTCCTCTTCCATGTAGTTC 838
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TCTTGTTCACGGCCTATGGCTCAGCCGCCATGGGGCAGCTTTTCCTCTTCCATGTAGTTC 858
Query 839 TCATAAGAAAGGGGATGAGAACATATGACTACATATTAGCGATGAAGGAGGAGAATCAAT 898
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 859 TCATAAGAAAGGGGATGAGAACATATGACTATATATTAGCAATGAAGGAGGAGAATCAAT 918
Query 899 TTACAGAAGTGGACCCTTTTGATGAATTAGATTCGTCTTCAGATGAAAGCTCAGATTTTG 958
|| |||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 919 TTGCAGAAGTGGATCCTTTTGATGAATTAGATTCATCTTCAGATGAAAGCTCGGATTTTG 978
Query 959 ATTCGCCTGAAAGATTAAGACCAACGTTTATCTCCAAGTTTATGTGCAGGAAAGCAAATG 1018
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 ATTCGCCGGAAAGATCAAGACCAACGTTTATCTCCAAGTTTATGTGCAGGAAAGCAAATG 1038
Query 1019 AGAATCAGCAGAGACTATCCATAAAAATAGAAGGAGATGAACAGT-CACCTTCTTCCACG 1077
|||||||||||||||| || |||||||||||||||||||||| || ||||||||||||||
Sbjct 1039 AGAATCAGCAGAGACTGTCGATAAAAATAGAAGGAGATGAAC-GTTCACCTTCTTCCACG 1097
Query 1078 CTGATCAACAAGAAACCGGGGTTTCATGTAAGCATAAACCCATGGAAACTGATAACATTA 1137
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GTGATCAACAAGAAACCGGGTTTTCATGTAAGCATAAACCCATGGAAACTGATAACATTA 1157
Query 1138 AGCAGTGAAAAGGCTCTACAAGCAGCTGAGAAAGCAAAGGAAAGACTGAGGAAGACGAAA 1197
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1158 AGCAGTGAAAAGGCTCTACAAGCAGCTGAGAAAGCAAAGGAAAGACTGAGGAAGGCGAAA 1217
Query 1198 CCAGTTTCCGGGACTGAAGAAAATTCACTTAAGCCACTTCCATTAGAGACCAAATTCGGA 1257
|||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1218 CCAGTTTCCGGGGCTGAAGAAGATTCACTTAAGCCACTTCCATTAGAGACGAAATTCGGA 1277
Query 1258 CTTTTGTTAGATCCTGACAATAACAACACTGTGTTGCAACCATCAACAACTGCAGCAGTA 1317
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1278 CTTTTGTTAGATCCTGACAATAACAACACTGTGTTGCCACCATCAACAACTGCAGCAGTA 1337
Query 1318 AAGCTTCAGGTTTCACCTGGAAGATTCTCAAGCCCACGAAGAAGGTTCTCAGGCTCTTCA 1377
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1338 AAGCTTCAGGTTTCACCTGGAAGATTCTCAAGCCCAAGAAGAAGGTTCTCAGGCTCTTCA 1397
Query 1378 TCTTCAACTGTGCCTTCGCCGAAGCAAAAATACAGAACTAACTTTGACTTGAAGCTAACT 1437
|||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1398 TCTTCAACTGTGCCATCACCGAAGCAAAAATACAGAAGTAACTTTGACTTGAAGCTAACT 1457
Query 1438 GAAGTCTCTAGGGAGCTGGAAAGTTACATCTCAAGACAGGTTTTATGTTCTGTGATAAAA 1497
||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1458 GAAGTCTCTAGAGAGCTTGAAAGTTACATCTCAAGACAGGTTTTGTGTTCTGTAATAAAA 1517
Query 1498 CAAGATGGAAGTGAAGCATCACCAAGATAA 1527
||||||||||||||||||||||||||||||
Sbjct 1518 CAAGATGGAAGTGAAGCATCACCAAGATAA 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5