BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01735.1
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490402 jgi|Araly1|490402|fgenesh2_kg.6__3536__AT4G01735.1 856 0.0
> Ahg490402 jgi|Araly1|490402|fgenesh2_kg.6__3536__AT4G01735.1
Length=564
Score = 856 bits (463), Expect = 0.0
Identities = 533/566 (94%), Gaps = 7/566 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGAGAACCAGAACCAGTTTTGTAGACAAGAGACTGATCCTTCACTCTCGGCTCAA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGAGAACCAGAACCAGTTTTGTAGAAAAGAGACTGATCCTTCACTCTCGGCTCAA 60
Query 61 GCCATGGGGGAGCATCAGCGGATTGGAACCTCTGGTTTAGTAGAAGACACAGATCCCTCA 120
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 61 GCCATGGGGGAGCATCAGCGGATTGAAACCTCTGGTTTAGCAGAAGTCACAGATCCCTCA 120
Query 121 CAACTTCCAATGGAGCTTCAAGAAGAATACATATTGGATCATCAAGATCAACACTTCTCA 180
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 121 CAACTTCCAATGGAGCTTCAAGAAGAATACATATTGGGTCATCAACATCAACACTTCTCA 180
Query 181 ATGGAGCAACAACAAAACAAGATTATTGGACAAGCCACACATCTCTCTTCACAGCTTCCA 240
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGAGCAACAACAAAACCAGATTACTGGACAAGCCACACATCTCTCTTCACAGCTTCCA 240
Query 241 GTTATGATGAATCAAGCCATAGATGAAC-GACATTGCTGTCA---GCCATATCATCAAAA 296
|||||||||||| ||||| ||||||||| | |||| ||||| |||||||||||| ||
Sbjct 241 GTTATGATGAATGAAGCCGTAGATGAACCG-CATTATTGTCATCAGCCATATCATCAGAA 299
Query 297 CAATGATCTTTCAGTCGTTCCTATGGAGACTCAACAACAACACAATGTGGTTGGAAACTT 356
||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 300 CAATGATCTTTCAGTGGTTCCTATGGAGACTCAACAACAAGACAATGTGGTCGGAAACTT 359
Query 357 GGCTTCTCAACAACAACTTGAGGAACAAAACAATGTTCCGGTGATGACTATGAATCAAAC 416
||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 360 GGCTTCTCAACTACAACTTGAGGAACAAGACAATGTTCCGGTGGTGACTATGAATCAAAC 419
Query 417 CACAGAACAGCAGCAACCTTGTGAAACA-GCCACTACTCACAACGAATTGTTTCAAGAGA 475
||||||||||||||||||||||||| || ||||||||||||||||||||| | ||||||
Sbjct 420 CACAGAACAGCAGCAACCTTGTGAA-CAAGCCACTACTCACAACGAATTGATAGAAGAGA 478
Query 476 TGGATCCAGAGATTGCTAGTTTATTACTTGTACAAAACACAACAGAAGAAGATGCTAAGT 535
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 479 TGGATCCAGAGATTGCTAGTTTATTACTTGGACAAAACACAACAGAAGAAGATGCTAATT 538
Query 536 TTATGGCTTCATTAGGAAACTTTTAG 561
|| ||||| |||||||||||||||||
Sbjct 539 TTTTGGCTACATTAGGAAACTTTTAG 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20489551293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5