BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01750.1
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490401 jgi|Araly1|490401|fgenesh2_kg.6__3535__AT4G01750.1 1930 0.0
Ahg352664 jgi|Araly1|352664|fgenesh1_pg.C_scaffold_6003257 1253 0.0
Ahg943624 jgi|Araly1|943624|scaffold_604168.1 859 0.0
Ahg474813 jgi|Araly1|474813|fgenesh2_kg.1__4767__AT1G56550.1 835 0.0
Ahg924351 jgi|Araly1|924351|scaffold_105632.1 248 8e-65
> Ahg490401 jgi|Araly1|490401|fgenesh2_kg.6__3535__AT4G01750.1
Length=1394
Score = 1930 bits (1045), Expect = 0.0
Identities = 1244/1338 (93%), Gaps = 21/1338 (2%)
Strand=Plus/Plus
Query 112 GAATCCGATTCAAGCTTGTGAAAGTCTCTCTGCAAATCTTGTTGCTCTGTTGCTACAACA 171
||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1 GAATCCGATCCAAGCTTGTGAAAGTTTCTCTGCAAATCTTGTTGCTCTGCTGCTACAACA 60
Query 172 ATGGCGCAGAAACAACAGACCCTTCACCAACAACGACCATTCTCTTCTTCTCCTCGTTCT 231
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ATGGCGCAGAAACAACAGATTCTTCACCAACAACGACCATTCTCTTCCTCTCCTCGTTCT 120
Query 232 TATTCTTCAATCTCAAACCGTCCCATCTTTCTCCTTAGCCGCAACGGTCTCCTCCTTGTC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TATTCTTCAATCTCAAACCGTCCCATCTTTCTCCTTAGCCGCAACGGTCTCCTCCTTCTC 180
Query 292 CTTCTCGCTCTCTTCCTTCTCCTCGGTGTATTCTTACCTTGGCCCGGATCTCCTTTGTTG 351
||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||
Sbjct 181 CTTCTCGCTCTCTTCCTTCTCCTTGGTGTATTCTTACCCTGGCCAGGATCTCCTCTGTTG 240
Query 352 CTATTTCCGAACAAAGTCTCTTCTCCTTCTTATGCTTCTTCTTTGTCTCCGCATGCCAAA 411
||||| || ||||||||||||||||||||| ||||| ||||||||||| | || ||||||
Sbjct 241 CTATTACCAAACAAAGTCTCTTCTCCTTCTAATGCTACTTCTTTGTCTTCACAAGCCAAA 300
Query 412 TCTGAATGGCGTAACTATACCCTTGCTCAGGCAGCTAAGTTTGTCGCCACGAACGGCACT 471
||||||||||| |||||||||| |||||||| |||||||| || |||| ||||||||||
Sbjct 301 TCTGAATGGCGCGACTATACCCTCGCTCAGGCCGCTAAGTTCGTGGCCAAGAACGGCACT 360
Query 472 GTGATCGTCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTCAACAACTGGTTGATTAGT 531
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GTGATCGTCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTTAACAACTGGTTGATTAGT 420
Query 532 GTTTCTAGACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTACTCTG 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTTCTAGACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTACTCTG 480
Query 592 TATAAAGTCAACGAAAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGATTCT 651
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 481 TATAAAGTCAACGAGAAGTGGCCTGGCCATGCCGTTCTTATTCCTCCTGCGCTCGATTCT 540
Query 652 AAAACCGCATACAGTTTCGGTTCCCAGGGTTTCTTCAACTTCACAGCTCGAAGGCCACAA 711
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 541 AGAACCGCATACAGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGGCCGCAA 600
Query 712 CATCTCTTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTT 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATCTCTTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTT 660
Query 772 TGGTTGCAAGATCCATTTCAGTATTTGGAGGGAAGCCATGACGCGTACTTTACGGATGAT 831
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 661 TGGTTGCAAGATCCGTTTCAGTATTTGGAGGGAAGCCACGACGCGTACTTCACGGATGAT 720
Query 832 ATGCCTCAAATAAAGCCTTTGAATCACTCTCATGATTTACCAGCGCCGGATCAAAACGGA 891
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 ATGCCTCAAATTAAGCCTTTGAATCACTCTCATGATTTACCAGATCCGGATCAAAACGGA 780
Query 892 GAGACTTATATATGTAGCTGCATGATTTACTTGCGACCCAC-GAATGGTGCAAAGCTTCT 950
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 781 GAGACTTATATATGTAGCTGCATGATTTACTTGCGTCCCACTGA-TGGTGCAAAGCTTCT 839
Query 951 AATGAAGAAATGGAGTGAGGAACTTCAGTCCCAAGCTTGGTCTGAGTCCATCCGTTTTAA 1010
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 AATGAAGAAATGGAGTGAGGAACTTCAATCCCAAGCTTGGTCTGAGTCCATCCGTTTTAA 899
Query 1011 AGCAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCCCATCAAGTGGATCT 1070
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 AGCAAATGACCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAGTGGATCT 959
Query 1071 CTACTTGCTTTCTCAGGTAGCTTTTCCAACAGGAGGATTGTATTTCAATGATGCGGCATG 1130
|||||||| || || |||||||||||||||||||||||||| |||| | | | ||||||
Sbjct 960 GTACTTGCTCTCGCAAGTAGCTTTTCCAACAGGAGGATTGTACTTCAGTAACGAGGCATG 1019
Query 1131 GGTTAAAGAGACAAAGGGGAAACATGTCATAGTCCACAATAACTACATTATCGGTTACGA 1190
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1020 GGTTAAAGAGACAAAGGGGAAACATGTCATAATCCACAATAACTACATTATCGGTTACGA 1079
Query 1191 TAGGAAAATGAGACGGTTCCAAGATTATGGTCTATGGCTAGTCGATGATCATGCTCTCGA 1250
| ||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1080 CAACAAAATGAGACGTTTCCAAGAATATGGTCTATGGCTAGTCGATGATCATACTCTCGA 1139
Query 1251 GTCTCCATTAGGGAAATTGCAGTAAATTCGAATGGCTAAAGAAAGATAG-ATCCATTGAG 1309
|||||||||||||||||| |||||||||| ||| | ||||||||||||| | ||| ||||
Sbjct 1140 GTCTCCATTAGGGAAATTACAGTAAATTCCAATTGATAAAGAAAGATAGTA-CCACTGAG 1198
Query 1310 TAAATTCCTTA-GAACTTTTTG-GGATCTTTAAA-GGTA-TGCG-TG-A-GTGTTATATT 1362
|||| |||||| | |||||| || || ||||| |||| | || | || || ||||
Sbjct 1199 TAAACTCCTTATG---TTTTTGAGGGTCCTTAAAAGGTAATATTATGTAAGT-TT-TATT 1253
Query 1363 ACATATGACTAATTCATTATGACTTGAGTTTTGTTAATCCAGTTGT--AATGTTTAGTAG 1420
| |||| |||||||| |||||||||||||| |||||||||||||| |||||| ||||
Sbjct 1254 A--TATGGCTAATTCAGTATGACTTGAGTTTGGTTAATCCAGTTGTGTAATGTT-AGTAA 1310
Query 1421 AAACAGAGGAAAACAGGG 1438
||||||||||||||||||
Sbjct 1311 AAACAGAGGAAAACAGGG 1328
> Ahg352664 jgi|Araly1|352664|fgenesh1_pg.C_scaffold_6003257
Length=915
Score = 1253 bits (678), Expect = 0.0
Identities = 826/896 (92%), Gaps = 16/896 (2%)
Strand=Plus/Plus
Query 172 ATGGCGCAGAAACAACAGACCCTTCACCAACAACGACCATTCTCTTCTTCTCCTCGTTCT 231
||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCGCAGAAGCAACAGATCTTTCACCAACAACGACCATTCTCTTCCTCTCCTCGTTCT 60
Query 232 TATTCTTCAATCTCAAACCGTCCCATCTTTCTCCTTAGCCGCAACGGTCTCCTCCTTGTC 291
||||||||||||||| ||||||||||| | ||| |||||||||||||||||||||| ||
Sbjct 61 TATTCTTCAATCTCAGTCCGTCCCATCTCTGTCCGTAGCCGCAACGGTCTCCTCCTTCTC 120
Query 292 CTTCTCGCTCTCTTCCTTCTCCTCGGTGTATTCTTACCTTGGCCCGGATCTCCTTTGTTG 351
||||||||||||||| |||||||||||||||||||||| ||||| |||||||| || ||
Sbjct 121 CTTCTCGCTCTCTTCTTTCTCCTCGGTGTATTCTTACCCTGGCCAGGATCTCCCTTATT- 179
Query 352 CTA-TTTCCGAACAAAGTCTCTTCTCCTTCTTATGCTTCTTCTTTGTCTCCG-CAT-GCC 408
| | ||||| || | || || |||| |||| | | |||||||| |||| ||| | | | |
Sbjct 180 CCAGTTTCC-AA-ACAGACT-TTCTTCTTC-T-T-CTTCTTCTCTGTCACCGTC-TCGGC 232
Query 409 AAATCTGAATGGCGTAACTATACCCTTGCTCAGGCAGCTAAGTTTGTCGCCACGAACGGC 468
| || |||||| ||||||||||||||||||| |||||||| || |||| |||||||
Sbjct 233 -AGTCCAAATGGCACGACTATACCCTTGCTCAGGCCGCTAAGTTCGTGGCCAAGAACGGC 291
Query 469 ACTGTGATCGTCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTCAACAACTGGTTGATT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ACTGTGATCGTCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTCAACAACTGGTTGATT 351
Query 529 AGTGTTTCTAGACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTACT 588
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 352 AGTGTTTCTAGACAGAAGCATCAAGAAAAAGTCCTCGTGATCGCTGAGGATTACGCTACT 411
Query 589 CTGTATAAAGTCAACGAAAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGAT 648
||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 412 CTGTATAAAGTTAACGAGAAGTGGCCTGGCCATGCCGTTCTTATTCCTCCGGCGCTCGAT 471
Query 649 TCTAAAACCGCATACAGTTTCGGTTCCCAGGGTTTCTTCAACTTCACAGCTCGAAGGCCA 708
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 472 TCCAAAACCGCATACAGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGGCCG 531
Query 709 CAACATCTCTTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATG 768
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CAACATCTCTTGCAAGTTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATG 591
Query 769 GTTTGGTTGCAAGATCCATTTCAGTATTTGGAGGGAAGCCATGACGCGTACTTTACGGAT 828
||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 592 GTTTGGTTGCAAGATCCGTTTCAGTATTTGGAGGGAAGCCATGACGTGTACTTCACGGAT 651
Query 829 GA-TATGCCTCAAATAAAGCCTTTGAATCACTCTCATGATTTACCAGCG-CCGGATCAAA 886
|| | ||||||||||||||||||||||||||||||||||||||||| | |||| || ||
Sbjct 652 GACT-TGCCTCAAATAAAGCCTTTGAATCACTCTCATGATTTACCA-CATCCGGGTCGAA 709
Query 887 ACGGAGAGACTTATATATGTAGCTGCATGATTTACTTGCGACCCACGAATGGTGCAAAGC 946
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 710 ACGGAGAGACGTATATATGTAGCTGCATGATTTACTTGCGACCCACTAATGGTGCAAAGC 769
Query 947 TTCTAATGAAGAAATGGAGTGAGGAACTTCAGTCCCAAGCTTGGTCTGAGTCCATCCGTT 1006
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 770 TTCTAATGAAGAAATGGAGTGAGGAACTTCAATCCCAAGCTTGGTCTGAGTCCATCCGTT 829
Query 1007 TTAAAGCAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCCCATCAA 1062
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 830 TTAAAGCCAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAA 885
> Ahg943624 jgi|Araly1|943624|scaffold_604168.1
Length=1111
Score = 859 bits (465), Expect = 0.0
Identities = 758/895 (85%), Gaps = 38/895 (4%)
Strand=Plus/Plus
Query 416 AATGGCGTAACTATACCCTTGCTCAGGCAGCT-AAGTTTGTCGCCACGAACGGCACTGTG 474
||||||| ||||| |||| |||| || | | ||||| ||||| | |||||| ||||||
Sbjct 238 AATGGCGCGACTATTCCCTCCCTCAAGCCG-TCAAGTTCGTCGCTAAGAACGGAACTGTG 296
Query 475 ATCGTCTGCGCCGTGAGCTCA-CCATTCTTGCCTTTTCTCAACAACTGGTTGATTAGTGT 533
||||||||||||||||||| | |||| |||||||||||||||||| ||||||||||||||
Sbjct 297 ATCGTCTGCGCCGTGAGCT-ACCCATACTTGCCTTTTCTCAACAATTGGTTGATTAGTGT 355
Query 534 TTCTAGACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTACTCTGTA 593
|||||||||||||||||| || |||| || || ||||||||||||||| |||||| ||
Sbjct 356 TTCTAGACAGAAGCATCAGGATCAAGTTCTCGTTATCGCTGAGGATTACGCTACTCTCTA 415
Query 594 TAAAGTCAACGA-AAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGATTCTA 652
||| || ||||| ||| |||||||| ||||||||||| |||||||| ||| | ||||||
Sbjct 416 TAAGGTTAACGAGAAA-TGGCCTGGTCACGCCGTTCTCATTCCTCCGGCGTTAGATTCTC 474
Query 653 AAACCG--CATACAGTTTCGGTTCCCAGGGTTTCTTCAACTTCACAGCTCGAAGGCCACA 710
| |||| |||| | ||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 475 AGACCGCTCATA-A-ATTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGGAGGCCGCA 532
Query 711 ACATCTCTTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGT 770
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 533 ACATCTCTTGGAAATTTTGGAGTTAGGTTACAATGTTATGTACAACGATGTTGATATGGT 592
Query 771 TTGGTTGCAAGATCCATTTCAGTATTTGGAGGGAA-GCCATGACGCGTACTTTACGGATG 829
|||||||||||||| |||| |||||||||||||| || | || |||||||| | |||||
Sbjct 593 CTGGTTGCAAGATCCGTTTCTGTATTTGGAGGGAAAGC-ACGATGCGTACTTCATGGATG 651
Query 830 ATATGCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCAGCGCCGGATCAAAAC 888
||||| || | | ||| ||||||| |||||||||||||||||||| | |||| | ||||
Sbjct 652 ATATGACTGCGATTAA-GCCTTTGGATCACTCTCATGATTTACCACCTCCGGGTAAAAAG 710
Query 889 GGAGAG-ACTTATATATGTAGCTGCATGATTTACTTGCGACCCAC-GAATGGTGCAAAGC 946
||| || |||||||| |||||||| ||||||| |||||| ||||| || ||| ||||| |
Sbjct 711 GGA-AGGACTTATATTTGTAGCTGTATGATTTTCTTGCGTCCCACTGA-TGGGGCAAAAC 768
Query 947 TTCTAATGAAGAAATGGAGTGAGGAACTTCAGTCCCAAGCTTGGTCT-GAGTCCATCCGT 1005
|||| ||||||||||||| |||||| ||| | ||||| ||||||| ||| | | |
Sbjct 769 TTCTCATGAAGAAATGGATTGAGGAGCTTGAAACCCAACCTTGGTCCAGAG-CTAA--G- 824
Query 1006 TTTAAAGCAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCCCATCAAGTG 1065
||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||
Sbjct 825 ---AAAGCAAATGATCAGCCTGGTTTTAACTGGGCACTTAACAAAACAGCTCATCTGGTG 881
Query 1066 GATCTCTACTTGCTTTCTCAGGTAGCTTTTCCAACAGGAGGATTGTATTTCAATGATGCG 1125
|||||||||||||| ||||||| |||||| ||||||||||||||||||||||| || |
Sbjct 882 GATCTCTACTTGCTATCTCAGGCAGCTTTCCCAACAGGAGGATTGTATTTCAA-GAA-CA 939
Query 1126 G--CATGGGTTAAAGAGACAAAGGGGAAACATGTCAT-AGTCCACAATAACTACATTATC 1182
||||||||||||| |||||||| ||||||||||| | ||||||||||||||||| ||
Sbjct 940 AAACATGGGTTAAAGAAACAAAGGGAAAACATGTCATTA-TCCACAATAACTACATTGTC 998
Query 1183 GGTTACGATAGGAAAATGAGACGGTTCCAAGA-TTATGGTCTATGGCTAGTCGATGATCA 1241
|||| || | ||| || | ||| |||| || || | |||||||||||||||||| ||
Sbjct 999 GGTTTTGAAAAGAAGATCAAACGTTTCCGTGACTT-TAATCTATGGCTAGTCGATGACCA 1057
Query 1242 TGCTCTC-GAGTCTCCATTAGGGAAATT-GCAGTAAATTCGAATGGCTAAAGAAA 1294
|||| || |||||||||||||||||||| | ||||||| |||||||| ||| |||
Sbjct 1058 TGCT-TCCGAGTCTCCATTAGGGAAATTAG-AGTAAATCCGAATGGCAAAAAAAA 1110
> Ahg474813 jgi|Araly1|474813|fgenesh2_kg.1__4767__AT1G56550.1
Length=1568
Score = 835 bits (452), Expect = 0.0
Identities = 862/1054 (82%), Gaps = 51/1054 (5%)
Strand=Plus/Plus
Query 239 CAATCTCAAACCGTCCCATCTTTCTCCTTAGCCGCAACGG--T-CTCCTCCTTGTCCTTC 295
|||||||||||||| |||||| |||||| | ||||||||| | ||||||||| ||||||
Sbjct 256 CAATCTCAAACCGTTCCATCTCTCTCCTCAACCGCAACGGTCTCCTCCTCCTTCTCCTTC 315
Query 296 TCGCTCTCTTCCTTCTCCTCGGTGTATTCTTACCTTGGCCCGGATC-TCCTTTGTTGCTA 354
| ||||||||| || |||| ||||| ||| |||||| | ||||| ||| || || ||
Sbjct 316 TAGCTCTCTTCGTTATCCTAGGTGTGTTCCTACCTTTAACAGGATCTTCC-TTATTCCTG 374
Query 355 TTTCC-GA-ACAA-AGTC-TCTTCTCCTTCTTATGCTTCTTCTTTGTCTCCG-CATGCCA 409
| ||| || |||| | || ||||||| |||| | ||||||| || | || | | | ||
Sbjct 375 TCTCCAGACACAACA-TCTTCTTCTCTTTCTCCTTCTTCTTC-TT-TATCGGTC-T-CC- 428
Query 410 AATCTGAATGGCGTAACTATACCCTTGCTCAGGCAGCTAAGTTTGTCGCCACGAACG-GC 468
| ||| | ||| ||||| |||||||||| || | ||||||||| || | ||||| |
Sbjct 429 GA-CTGGA--GCG--ACTATTCCCTTGCTCAAGCCGTTAAGTTTGTGGCTAAGAACGAG- 482
Query 469 ACTGTGATCGTCTGCGCCGTGAGCTCA-CCATTCTTGCCTTTTCTCAACAACTGGTTGAT 527
|||||||||||||| ||||| |||| | || |||||||||||||||||||||||||| ||
Sbjct 483 ACTGTGATCGTCTGTGCCGTTAGCT-ACCCTTTCTTGCCTTTTCTCAACAACTGGTTAAT 541
Query 528 TAGTGTTTCTAGACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTAC 587
||| ||||||||||||| ||||||||||| || |||||||||||||| |||||| |||
Sbjct 542 TAGCATTTCTAGACAGAACCATCAAGAAAAGGTTCTTGTGATCGCTGAAGATTACGCTAC 601
Query 588 TCTGTATAAAGTCAACGAAAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGA 647
| |||| ||||||||||||||||||||||| || || ||||| |||||||||||| | ||
Sbjct 602 TTTGTACAAAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCCAGCGTTGGA 661
Query 648 TTCTAAAACCGCATAC-AGTTTCGGTTCCCAGGGTTTCTTCAACT-TCACAGCTCGAAGG 705
| || || ||||| || | ||| |||||||||||||||||||| | | ||| |||| |||
Sbjct 662 TCCTCAAGCCGCACACAAATTT-GGTTCCCAGGGTTTCTTCAA-TCTGACATCTCGGAGG 719
Query 706 CCACAACATCTCTTGCAA-ATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGA 764
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 CCACAACATCTCTTG-AACATTTTGGAGCTAGGTTACAATGTTATGTACAATGATGTTGA 778
Query 765 TATGGTTTGGTTGCAAGATCCATTTCAGTATTTGGAGGGAAGCCATGACGCGTACTTTAC 824
|||||| ||| | |||||||| ||||| ||||| |||||||||| ||||| ||||| |
Sbjct 779 TATGGTCTGGCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATACTTCAT 838
Query 825 GGATGATATGCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCAGCGCCGGA-T 882
|||||| ||| | | | ||| ||||||||||||||| |||| | ||||| | | ||| |
Sbjct 839 GGATGACATGATTGCGATTAA-GCCTTTGAATCACTCCCATGGTCTACCACCTC-GGAGT 896
Query 883 CAAAACGGAGAGACTTATATATGTAGCTGCATGATTTACTTGCGACCCACGAATGGTGCA 942
| || ||||| ||||||| |||||||||||||||||| |||||| | ||| |||| |||
Sbjct 897 CGAAGCGGAGTGACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCAACGGATGGCGCA 956
Query 943 AAGCTTCTAATGAAGAAATGGAGT-GAGGAACTTCA-GTCCCAAGCTTGGTCTGAGTCC- 999
|| ||||||||||||| |||| || |||||| |||| || | || ||||| | | ||
Sbjct 957 AAACTTCTAATGAAGACATGG-GTTGAGGAAATTCAAGTTC-AACCTTGGAATAACACCC 1014
Query 1000 ATCCGTTTTAAAGCAAATGATCAGCCTGCTTTTAACTTGG-CACTTAACAAAACAGCCCA 1058
| | ||| || ||||||||||||||||||| | || ||||| |||||||||| |
Sbjct 1015 AAGCAAAG-AAACCACATGATCAGCCTGCTTTTAA-TCGGGCACTTCACAAAACAGCTAA 1072
Query 1059 TCAAGTGGATCTCTACTTGCTTTCTCAGGT-AGCTTTTCCAACAGGAGGATTGTATTTCA 1117
||| || ||| ||||||||||| | || | ||| || || ||||||||||||| ||||
Sbjct 1073 TCAGGTAGATGTCTACTTGCTTCCGCAA-TCAGCATTCCCGTCAGGAGGATTGTACTTCA 1131
Query 1118 ATGA-TGCGGCATGGGTTAAAGAGACAAAGGGGAAACATGTCATAGTCCACAATAACTAC 1176
| || || | |||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1132 A-GAATGAGACATGGGTTAATGAGACAAAGGGGAAACATGTCATAGTCCATAATAACTAC 1190
Query 1177 ATTATCGGTTACGATAGGAAAATGAGACGGTTCCAAGA-TTATGGTCTATGGCTAGTCGA 1235
|||||||||||||| ||||| |||| ||| || ||||| || | |||||||||||| ||
Sbjct 1191 ATTATCGGTTACGAAAGGAAGATGAAACGCTTTCAAGACTT-TAATCTATGGCTAGTAGA 1249
Query 1236 TGATCATGCTCTCGAGTCTCCATTAGGGAA-ATT 1268
||| |||||||||||||||||| | ||||| |||
Sbjct 1250 TGACCATGCTCTCGAGTCTCCACT-GGGAATATT 1282
> Ahg924351 jgi|Araly1|924351|scaffold_105632.1
Length=610
Score = 248 bits (134), Expect = 8e-65
Identities = 219/259 (85%), Gaps = 10/259 (4%)
Strand=Plus/Plus
Query 703 AGGCCACAACATCTCTTGCAA-ATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGT 761
|||||||||||||||||| || | |||||||||||||||||||||||||||||| |||||
Sbjct 190 AGGCCACAACATCTCTTG-AACA-TTTGGAGCTAGGTTACAATGTTATGTACAATGATGT 247
Query 762 TGATATGGTTTGGTTGCAAGATCCATTTCAGTATTTGGAGGGAAGCCATGACGCGTACTT 821
||||||||| ||| | |||||||| ||||| ||||| |||||||||| ||||| |||||
Sbjct 248 TGATATGGTCTGGCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATACTT 307
Query 822 TACGGATGATATGCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCAGCGCCGG 880
| |||||| ||| | | | ||| ||||||||||||||| |||| | ||||| | | ||
Sbjct 308 CATGGATGACATGATTGCGATTAA-GCCTTTGAATCACTCCCATGGTCTACCACCAC-GG 365
Query 881 A-TCAAAACGGAGAGACTTATATATGTAGCTGCATGATTTACTTGCGACCCACGAATGGT 939
| || | ||||| ||||||| |||||||||||||||||| ||||| || ||| ||||
Sbjct 366 AGTCGAGGCGGAGTGACTTATGTATGTAGCTGCATGATTTTCTTGC--CC-ACGGATGGC 422
Query 940 GCAAAGCTTCTAATGAAGA 958
|||||||||||||||||||
Sbjct 423 GCAAAGCTTCTAATGAAGA 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56183111375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5