BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01770.1
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490401 jgi|Araly1|490401|fgenesh2_kg.6__3535__AT4G01750.1 1659 0.0
Ahg352664 jgi|Araly1|352664|fgenesh1_pg.C_scaffold_6003257 1297 0.0
Ahg943624 jgi|Araly1|943624|scaffold_604168.1 1003 0.0
Ahg474813 jgi|Araly1|474813|fgenesh2_kg.1__4767__AT1G56550.1 813 0.0
Ahg924351 jgi|Araly1|924351|scaffold_105632.1 243 4e-63
> Ahg490401 jgi|Araly1|490401|fgenesh2_kg.6__3535__AT4G01750.1
Length=1394
Score = 1659 bits (898), Expect = 0.0
Identities = 1253/1412 (89%), Gaps = 73/1412 (5%)
Strand=Plus/Plus
Query 1 CAAACTTGTAAAATTTTCTCCT-CAAATTTTGTTGCTCTACTGCTACAACAATGGAGCAG 59
||| ||||| ||| ||||| || ||||| |||||||||| ||||||||||||||| ||||
Sbjct 11 CAAGCTTGTGAAAGTTTCT-CTGCAAATCTTGTTGCTCTGCTGCTACAACAATGGCGCAG 69
Query 60 AAACAACATATTCTT-A--AACAAAGTA-CATTCTCTTCCTCTCCTAGTTCTTATTCTTC 115
|||||||| |||||| | ||||| | | ||||||||||||||||| |||||||||||||
Sbjct 70 AAACAACAGATTCTTCACCAACAACG-ACCATTCTCTTCCTCTCCTCGTTCTTATTCTTC 128
Query 116 AATCTCAGACCGTCCCAtctctctccttagccgcaacggtctcctccttctccttctcgc 175
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 129 AATCTCAAACCGTCCCATCTTTCTCCTTAGCCGCAACGGTCTCCTCCTTCTCCTTCTCGC 188
Query 176 tctcgtcctgctcctcGGTGTACTCTTGCCCTGGCCAGGATCTCCCT-TATTCCTGTTTC 234
|||| |||| ||||| |||||| |||| ||||||||||||||| ||| | || || || |
Sbjct 189 TCTCTTCCTTCTCCTTGGTGTATTCTTACCCTGGCCAGGATCT-CCTCTGTTGCTATTAC 247
Query 235 C-AA-ATAGACT-TTCTTCTTCT-TTGTC-AC--C---GTC-TC-C--G-C-AGTCCAAA 278
| || | || || |||| ||||| || | || | ||| || | | | | || ||
Sbjct 248 CAAACAAAGTCTCTTCTCCTTCTAATG-CTACTTCTTTGTCTTCACAAGCCAAATCTGAA 306
Query 279 TGGCGCGACTATACCCTTGCTCAGGCGGCTAGGTTCGTGGCCAAGAATGGCACTGTGATA 338
||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||
Sbjct 307 TGGCGCGACTATACCCTCGCTCAGGCCGCTAAGTTCGTGGCCAAGAACGGCACTGTGATC 366
Query 339 GTCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTCAACAACTGGTTGATTAGTGTTTCT 398
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 367 GTCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTTAACAACTGGTTGATTAGTGTTTCT 426
Query 399 AGACAAAAGCATCAAGACAAAGTCCTCGTGATCGCTGAGGATTACATTACTCTGTATAAA 458
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 427 AGACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTACTCTGTATAAA 486
Query 459 GTCAACGAGAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGATTCTAAAACC 518
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||
Sbjct 487 GTCAACGAGAAGTGGCCTGGCCATGCCGTTCTTATTCCTCCTGCGCTCGATTCTAGAACC 546
Query 519 GCATTCAGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGGCCGCAACATCTC 578
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GCATACAGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGGCCGCAACATCTC 606
Query 579 TTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTTTGGTTG 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTTTGGTTG 666
Query 639 CAAGATCCATTTCTGTATTTGGAGGGAAGCCATGACGCGTATTTCACCGATGACATGCCT 698
|||||||| |||| |||||||||||||||||| |||||||| ||||| ||||| ||||||
Sbjct 667 CAAGATCCGTTTCAGTATTTGGAGGGAAGCCACGACGCGTACTTCACGGATGATATGCCT 726
Query 699 CAAATAAAGCCTTTGAATCACTCTCATGATTTACCACATCCGGATCGAAACGGAGAGACT 758
||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 727 CAAATTAAGCCTTTGAATCACTCTCATGATTTACCAGATCCGGATCAAAACGGAGAGACT 786
Query 759 TATATATGTAGCTGCATGATTTACTTGCGACCTAC-GAATGGTGCAAAGCTTCTAATGAA 817
||||||||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 787 TATATATGTAGCTGCATGATTTACTTGCGTCCCACTGA-TGGTGCAAAGCTTCTAATGAA 845
Query 818 GAAATGGAGTGAGGAACTTCAATCCCAAGCTTGGTCTGAATCCATCCGTTTTAAAGCAAA 877
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 846 GAAATGGAGTGAGGAACTTCAATCCCAAGCTTGGTCTGAGTCCATCCGTTTTAAAGCAAA 905
Query 878 TGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAGTGGATCTCTACTT 937
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 906 TGACCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAGTGGATCTGTACTT 965
Query 938 GCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTACTTCAAG-AACGAGGCATGGGTTC 996
||| || ||||||||||| |||||||||||||||||||||| | |||||||||||||||
Sbjct 966 GCTCTCGCAAGTAGCTTTTCCAACAGGAGGATTGTACTTCA-GTAACGAGGCATGGGTTA 1024
Query 997 AAGAGACAAAGGGGAAACATGTCATAGTCCACAATAACTACATTATCGGTTACGACAGGA 1056
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1025 AAGAGACAAAGGGGAAACATGTCATAATCCACAATAACTACATTATCGGTTACGACAACA 1084
Query 1057 AAATGAAACGTTTCCAAGATTACGGTCTATGGCTTGTCGATGATCACGCTCTTGAGTCTC 1116
|||||| |||||||||||| || ||||||||||| ||||||||||| |||| |||||||
Sbjct 1085 AAATGAGACGTTTCCAAGAATATGGTCTATGGCTAGTCGATGATCATACTCTCGAGTCTC 1144
Query 1117 CATTAGGGAAATTAGAGTAAACTCGAATGGCTAAAGAAAGATAG-ATCCACTGAGTAAAT 1175
|||||||||||||| |||||| || ||| | ||||||||||||| | ||||||||||||
Sbjct 1145 CATTAGGGAAATTACAGTAAATTCCAATTGATAAAGAAAGATAGTA-CCACTGAGTAAAC 1203
Query 1176 TCCTTACAATTTTG-GGGATC-TTAA----T--TGTGA-G---GTT--AT-ATATGACTA 1220
|||||| ||||| ||| || |||| | | | | | ||| || ||||| |||
Sbjct 1204 TCCTTATGTTTTTGAGGG-TCCTTAAAAGGTAATATTATGTAAGTTTTATTATATGGCTA 1262
Query 1221 ATTC-GTTATGATTTGAGTTTGGTTAATCCAGTTGT--AATGTTTAGTAGaaaaaaaaGA 1277
|||| || |||| ||||||||||||||||||||||| |||||| |||| |||| | ||
Sbjct 1263 ATTCAGT-ATGACTTGAGTTTGGTTAATCCAGTTGTGTAATGTT-AGTA-AAAACA--GA 1317
Query 1278 GGAAAACAGGGGAAATTCAGAGATAGTCA-A-AGTTTCGCGACAGACAAATTTTGGTCTG 1335
||||||||||||||| | | || ||| | | ||| || | | | ||||||||||
Sbjct 1318 GGAAAACAGGGGAAA---A-A--TA-TCAGATATTTT-GC-A-A-A----TTTTGGTCTG 1362
Query 1336 TATGTAGTAAACAAATGAGACTCAAGATGTAT 1367
||||| |||||||||||||| || ||||||||
Sbjct 1363 TATGTTGTAAACAAATGAGATTCGAGATGTAT 1394
> Ahg352664 jgi|Araly1|352664|fgenesh1_pg.C_scaffold_6003257
Length=915
Score = 1297 bits (702), Expect = 0.0
Identities = 828/887 (93%), Gaps = 16/887 (2%)
Strand=Plus/Plus
Query 51 ATGGAGCAGAAACAACATATTC-TT-A--AACAAAGTA-CATTCTCTTCCTCTCCTAGTT 105
|||| |||||| ||||| | || || | ||||| | | ||||||||||||||||| |||
Sbjct 1 ATGGCGCAGAAGCAACAGA-TCTTTCACCAACAACG-ACCATTCTCTTCCTCTCCTCGTT 58
Query 106 CTTATTCTTCAATCTCAGACCGTCCCAtctctctccttagccgcaacggtctcctccttc 165
|||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct 59 CTTATTCTTCAATCTCAGTCCGTCCCATCTCTGTCCGTAGCCGCAACGGTCTCCTCCTTC 118
Query 166 tccttctcgctctcgtcctgctcctcGGTGTACTCTTGCCCTGGCCAGGATCTCCCTTAT 225
|||||||||||||| || | |||||||||||| |||| ||||||||||||||||||||||
Sbjct 119 TCCTTCTCGCTCTCTTCTTTCTCCTCGGTGTATTCTTACCCTGGCCAGGATCTCCCTTAT 178
Query 226 TCCTGTTTCCAAATAGA----C-T-TTCTTCTTC-T-T-TGTCACCGTCTCCGCAGTCCA 276
||| ||||||||| ||| | | ||||||||| | | |||||||||||| ||||||||
Sbjct 179 TCCAGTTTCCAAACAGACTTTCTTCTTCTTCTTCTTCTCTGTCACCGTCTCGGCAGTCCA 238
Query 277 AATGGCGCGACTATACCCTTGCTCAGGCGGCTAGGTTCGTGGCCAAGAATGGCACTGTGA 336
|||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||||||
Sbjct 239 AATGGCACGACTATACCCTTGCTCAGGCCGCTAAGTTCGTGGCCAAGAACGGCACTGTGA 298
Query 337 TAGTCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTCAACAACTGGTTGATTAGTGTTT 396
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCGTCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTCAACAACTGGTTGATTAGTGTTT 358
Query 397 CTAGACAAAAGCATCAAGACAAAGTCCTCGTGATCGCTGAGGATTACATTACTCTGTATA 456
||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 359 CTAGACAGAAGCATCAAGAAAAAGTCCTCGTGATCGCTGAGGATTACGCTACTCTGTATA 418
Query 457 AAGTCAACGAGAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGATTCTAAAA 516
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 419 AAGTTAACGAGAAGTGGCCTGGCCATGCCGTTCTTATTCCTCCGGCGCTCGATTCCAAAA 478
Query 517 CCGCATTCAGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGGCCGCAACATC 576
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CCGCATACAGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGGCCGCAACATC 538
Query 577 TCTTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTTTGGT 636
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCTTGCAAGTTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTTTGGT 598
Query 637 TGCAAGATCCATTTCTGTATTTGGAGGGAAGCCATGACGCGTATTTCACCGATGACATGC 696
|||||||||| |||| ||||||||||||||||||||||| ||| ||||| |||||| |||
Sbjct 599 TGCAAGATCCGTTTCAGTATTTGGAGGGAAGCCATGACGTGTACTTCACGGATGACTTGC 658
Query 697 CTCAAATAAAGCCTTTGAATCACTCTCATGATTTACCACATCCGGATCGAAACGGAGAGA 756
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 CTCAAATAAAGCCTTTGAATCACTCTCATGATTTACCACATCCGGGTCGAAACGGAGAGA 718
Query 757 CTTATATATGTAGCTGCATGATTTACTTGCGACCTACGAATGGTGCAAAGCTTCTAATGA 816
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 719 CGTATATATGTAGCTGCATGATTTACTTGCGACCCACTAATGGTGCAAAGCTTCTAATGA 778
Query 817 AGAAATGGAGTGAGGAACTTCAATCCCAAGCTTGGTCTGAATCCATCCGTTTTAAAGCAA 876
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 779 AGAAATGGAGTGAGGAACTTCAATCCCAAGCTTGGTCTGAGTCCATCCGTTTTAAAGCCA 838
Query 877 ATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAA 923
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAA 885
> Ahg943624 jgi|Araly1|943624|scaffold_604168.1
Length=1111
Score = 1003 bits (543), Expect = 0.0
Identities = 914/1086 (84%), Gaps = 54/1086 (5%)
Strand=Plus/Plus
Query 85 CATTCTCTTCCTCTCCTAGTTCTTATTCTTCAATCTCAGACCGTCCCAtctctctcctta 144
||||||||||||||||| |||| |||||||||||||| | || || || |||||||| |
Sbjct 64 CATTCTCTTCCTCTCCTCTTTCTAATTCTTCAATCTCAAATCGACCAATTTCTCTCCTCA 123
Query 145 gccgcaacggtctcctccttctccttctcgctctcgtcctgctcctcGGTGTACTCTTGC 204
|||||||||||||||| | ||||||||||||||| || | ||||||||||| |||| |
Sbjct 124 GCCGCAACGGTCTCCT-C--CTCCTTCTCGCTCTCCTCGTTATCCTCGGTGTATTCTTAC 180
Query 205 CCTGGCCAGGATCTCCCTTATTCCTGTTTCCAAATAGACTTTCTTCTTCTTTGTCACCGT 264
||||| |||||||||||||||||| ||||||||| |||| || ||||| | |
Sbjct 181 CCTGGGCAGGATCTCCCTTATTCCCGTTTCCAAACAGAC--TC-TCTTC----T-----T 228
Query 265 CTCCGCAGTCCAAATGGCGCGACTATACCCTTGCTC-AGGCGGCTAGGTTCGTGGCCAAG 323
|| || |||||||||||||||||| |||| ||| || || | | |||||| || |||
Sbjct 229 CT---CAATCCAAATGGCGCGACTATTCCCTCCCTCAAGCCGTC-AAGTTCGTCGCTAAG 284
Query 324 AATGGCACTGTGATAGTCTGCGCCGTGAGCTCA-CCATTCTTGCCTTTTCTCAACAACTG 382
|| || |||||||| |||||||||||||||| | |||| |||||||||||||||||| ||
Sbjct 285 AACGGAACTGTGATCGTCTGCGCCGTGAGCT-ACCCATACTTGCCTTTTCTCAACAATTG 343
Query 383 GTTGATTAGTGTTTCTAGACAAAAGCATCAAGA-CAAAGTCCTCGTGATCGCTGAGGATT 441
||||||||||||||||||||| |||||||| || | |||| ||||| |||||||||||||
Sbjct 344 GTTGATTAGTGTTTCTAGACAGAAGCATCAGGATC-AAGTTCTCGTTATCGCTGAGGATT 402
Query 442 ACATTACTCTGTATAAAGTCAACGAGAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAG 501
|| |||||| ||||| || |||||||| |||||||| ||||||||||| |||||||| |
Sbjct 403 ACGCTACTCTCTATAAGGTTAACGAGAAATGGCCTGGTCACGCCGTTCTCATTCCTCCGG 462
Query 502 CGCTCGATTCTAAAACCG--CATTCAGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGC 559
|| | |||||| | |||| || | | ||||||||||||||||||||||||||||||||
Sbjct 463 CGTTAGATTCTCAGACCGCTCA-T-AAATTCGGTTCCCAGGGTTTCTTCAATTTCACAGC 520
Query 560 TCGAAGGCCGCAACATCTCTTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGA 619
||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 521 TCGGAGGCCGCAACATCTCTTGGAAATTTTGGAGTTAGGTTACAATGTTATGTACAACGA 580
Query 620 TGTTGATATGGTTTGGTTGCAAGATCCATTTCTGTATTTGGAGGGAA-GCCATGACGCGT 678
|||||||||||| |||||||||||||| ||||||||||||||||||| || | || ||||
Sbjct 581 TGTTGATATGGTCTGGTTGCAAGATCCGTTTCTGTATTTGGAGGGAAAGC-ACGATGCGT 639
Query 679 ATTTCACCGATGACATGCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCACAT 737
| |||| ||||| ||| || | | ||| ||||||| ||||||||||||||||||||| |
Sbjct 640 ACTTCATGGATGATATGACTGCGATTAA-GCCTTTGGATCACTCTCATGATTTACCACCT 698
Query 738 CCGGATCGAAACGGAGAG-ACTTATATATGTAGCTGCATGATTTACTTGCGACCTAC-GA 795
|||| | ||| ||| || |||||||| |||||||| ||||||| |||||| || || ||
Sbjct 699 CCGGGTAAAAAGGGA-AGGACTTATATTTGTAGCTGTATGATTTTCTTGCGTCCCACTGA 757
Query 796 ATGGTGCAAAGCTTCTAATGAAGAAATGGAGTGAGGAACTTCAATCCCAAGCTTGGTCT- 854
||| ||||| ||||| ||||||||||||| |||||| ||| || ||||| |||||||
Sbjct 758 -TGGGGCAAAACTTCTCATGAAGAAATGGATTGAGGAGCTTGAAACCCAACCTTGGTCCA 816
Query 855 GAATCCATCCGTTTTAAAGCAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACA 914
|| | | | ||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 817 GAG-CTAA--G----AAAGCAAATGATCAGCCTGGTTTTAACTGGGCACTTAACAAAACA 869
Query 915 GCTCATCAAGTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTAC 974
||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 870 GCTCATCTGGTGGATCTCTACTTGCTATCTCAGGCAGCTTTCCCAACAGGAGGATTGTAT 929
Query 975 TTCAAGAACGAGGCATGGGTTCAAGAGACAAAGGGGAAACATGTCAT-AGTCCACAATAA 1033
||||||||| | |||||||| |||| |||||||| ||||||||||| | ||||||||||
Sbjct 930 TTCAAGAACAAAACATGGGTTAAAGAAACAAAGGGAAAACATGTCATTA-TCCACAATAA 988
Query 1034 CTACATTATCGGTTACGACAGGAAAATGAAACGTTTCCAAGA-TT-ACGGTCTATGGCTT 1091
||||||| |||||| || | ||| || |||||||||| || || | |||||||||
Sbjct 989 CTACATTGTCGGTTTTGAAAAGAAGATCAAACGTTTCCGTGACTTTAA--TCTATGGCTA 1046
Query 1092 GTCGATGATCACGCT-CTTGAGTCTCCATTAGGGAAATTAGAGTAAACTC-GAATGGCTA 1149
|||||||| || ||| | |||||||||||||||||||||||||||| || ||||||| |
Sbjct 1047 GTCGATGACCATGCTTCC-GAGTCTCCATTAGGGAAATTAGAGTAAA-TCCGAATGGCAA 1104
Query 1150 AAGAAA 1155
|| |||
Sbjct 1105 AAAAAA 1110
> Ahg474813 jgi|Araly1|474813|fgenesh2_kg.1__4767__AT1G56550.1
Length=1568
Score = 813 bits (440), Expect = 0.0
Identities = 854/1048 (81%), Gaps = 52/1048 (5%)
Strand=Plus/Plus
Query 115 CAATCTCAGACCGTCCCAtctctctccttagccgcaacgg--t-ctcctccttctccttc 171
|||||||| ||||| ||||||||||||| | ||||||||| | ||||||||||||||||
Sbjct 256 CAATCTCAAACCGTTCCATCTCTCTCCTCAACCGCAACGGTCTCCTCCTCCTTCTCCTTC 315
Query 172 tcgctctcgtcctgctcctcGGTGTACTCTTGCCCTGGCCAGGATCTCCCTTATTCCTGT 231
| |||||| || | |||| ||||| || | || | |||||||| ||||||||||||
Sbjct 316 TAGCTCTCTTCGTTATCCTAGGTGTGTTCCTACCTTTAACAGGATCTTCCTTATTCCTGT 375
Query 232 TTCCA-A-ATAGACTTTCTTCTTCT-TTGTCACCGTC-TC--C----GCAG--TCCAAAT 279
|||| | | | || ||||||||| || || || || || | | | ||| | |
Sbjct 376 CTCCAGACACA-AC-ATCTTCTTCTCTT-TCTCCTTCTTCTTCTTTATCGGTCTCCGACT 432
Query 280 GGCGCGACTATACCCTTGCTCAGGCGGCTAGGTTCGTGGCCAAGAATG-GCACTGTGATA 338
|| |||||||| |||||||||| || | || ||| ||||| ||||| | | ||||||||
Sbjct 433 GGAGCGACTATTCCCTTGCTCAAGCCGTTAAGTTTGTGGCTAAGAACGAG-ACTGTGATC 491
Query 339 GTCTGCGCCGTGAGCTCA-CCATTCTTGCCTTTTCTCAACAACTGGTTGATTAGTGTTTC 397
||||| ||||| |||| | || |||||||||||||||||||||||||| ||||| ||||
Sbjct 492 GTCTGTGCCGTTAGCT-ACCCTTTCTTGCCTTTTCTCAACAACTGGTTAATTAGCATTTC 550
Query 398 TAGACAAAAGCATCAAGACAAA-GTCCTCGTGATCGCTGAGGATTACATTACTCTGTATA 456
|||||| || |||||||| ||| || || ||||||||||| |||||| |||| |||| |
Sbjct 551 TAGACAGAACCATCAAGA-AAAGGTTCTTGTGATCGCTGAAGATTACGCTACTTTGTACA 609
Query 457 AAGTCAACGAGAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGATTCTAAAA 516
|||||||||| ||||||||||| || || ||||| |||||||||||| | ||| || ||
Sbjct 610 AAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCCAGCGTTGGATCCTCAAG 669
Query 517 CCGCATTC-AGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGGCCGCAACAT 575
||||| | | ||| ||||||||||||||||||||| | ||| |||| ||||| ||||||
Sbjct 670 CCGCACACAAATTT-GGTTCCCAGGGTTTCTTCAATCTGACATCTCGGAGGCCACAACAT 728
Query 576 CTCTTGCAA-ATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTTTG 634
|||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 729 CTCTTG-AACATTTTGGAGCTAGGTTACAATGTTATGTACAATGATGTTGATATGGTCTG 787
Query 635 GTTGCAAGATCCATTTCTGTATTTGGAGGGAAGCCATGACGCGTATTTCACCGATGACAT 694
| | |||||||| |||| ||||| |||||||||| ||||| || |||| ||||||||
Sbjct 788 GCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATACTTCATGGATGACAT 847
Query 695 GCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCACATCCGGA-TCGAAACGGA 752
| | | | ||| ||||||||||||||| |||| | |||||| || ||| ||||| ||||
Sbjct 848 GATTGCGATTAA-GCCTTTGAATCACTCCCATGGTCTACCACCTC-GGAGTCGAAGCGGA 905
Query 753 GAGACTTATATATGTAGCTGCATGATTTACTTGCGACCTACGAATGGTGCAAAGCTTCTA 812
| ||||||| |||||||||||||||||| |||||| | ||| |||| ||||| ||||||
Sbjct 906 GTGACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCAACGGATGGCGCAAAACTTCTA 965
Query 813 ATGAAGAAATGGAGT-GAGGAACTTCAA-TCCCAAGCTTGGTCTGA-ATCCATCCGTTTT 869
||||||| |||| || |||||| ||||| | | || ||||| | | | ||| |
Sbjct 966 ATGAAGACATGG-GTTGAGGAAATTCAAGTTC-AACCTTGGAATAACACCCAAGCAAAG- 1022
Query 870 AAAGCAAATGATCAGCCTGCTTTTAACTTGG-CACTTAACAAAACAGCTCATCAAGTGGA 928
||| || ||||||||||||||||||| | || ||||| ||||||||||| |||| || ||
Sbjct 1023 AAACCACATGATCAGCCTGCTTTTAA-TCGGGCACTTCACAAAACAGCTAATCAGGTAGA 1081
Query 929 TCTCTACTTGCTTTCTCAAGT-AGCTTTCCCAACAGGAGGATTGTACTTCAAGAACGAGG 987
| ||||||||||| | ||| | ||| ||||| |||||||||||||||||||||| |||
Sbjct 1082 TGTCTACTTGCTTCCGCAA-TCAGCATTCCCGTCAGGAGGATTGTACTTCAAGAATGAGA 1140
Query 988 CATGGGTTCAA-GAGACAAAGGGGAAACATGTCATAGTCCACAATAACTACATTATCGGT 1046
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1141 CATGGGTT-AATGAGACAAAGGGGAAACATGTCATAGTCCATAATAACTACATTATCGGT 1199
Query 1047 TACGACAGGAAAATGAAACG-TTTCCAAGA-TT-ACGGTCTATGGCTTGTCGATGATCAC 1103
||||| ||||| |||||||| |||| |||| || | ||||||||| || ||||| ||
Sbjct 1200 TACGAAAGGAAGATGAAACGCTTTC-AAGACTTTAA--TCTATGGCTAGTAGATGACCAT 1256
Query 1104 GCTCTTGAGTCTCCATTAGGGAA-ATTA 1130
||||| ||||||||| | ||||| ||||
Sbjct 1257 GCTCTCGAGTCTCCACT-GGGAATATTA 1283
> Ahg924351 jgi|Araly1|924351|scaffold_105632.1
Length=610
Score = 243 bits (131), Expect = 4e-63
Identities = 219/260 (84%), Gaps = 12/260 (5%)
Strand=Plus/Plus
Query 564 AGGCCGCAACATCTCTTGCAA-ATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGT 622
||||| |||||||||||| || | |||||||||||||||||||||||||||||| |||||
Sbjct 190 AGGCCACAACATCTCTTG-AACA-TTTGGAGCTAGGTTACAATGTTATGTACAATGATGT 247
Query 623 TGATATGGTTTGGTTGCAAGATCCATTTCTGTATTTGGAGGGAAGCCATGACGCGTATTT 682
||||||||| ||| | |||||||| |||| ||||| |||||||||| ||||| || ||
Sbjct 248 TGATATGGTCTGGCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATACTT 307
Query 683 CACCGATGACATGCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCAC-ATCCG 740
|| ||||||||| | | | ||| ||||||||||||||| |||| | |||||| | | |
Sbjct 308 CATGGATGACATGATTGCGATTAA-GCCTTTGAATCACTCCCATGGTCTACCACCA-C-G 364
Query 741 GA-TCGAAACGGAGAGACTTATATATGTAGCTGCATGATTTACTTGCGACCTACGAATGG 799
|| |||| ||||| ||||||| |||||||||||||||||| ||||| || ||| ||||
Sbjct 365 GAGTCGAGGCGGAGTGACTTATGTATGTAGCTGCATGATTTTCTTGC--CC-ACGGATGG 421
Query 800 TGCAAAGCTTCTAATGAAGA 819
|||||||||||||||||||
Sbjct 422 CGCAAAGCTTCTAATGAAGA 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52526447855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5