BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01790.1
Length=614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895836 jgi|Araly1|895836|Al_scaffold_0006_3832 689 0.0
> Ahg895836 jgi|Araly1|895836|Al_scaffold_0006_3832
Length=513
Score = 689 bits (373), Expect = 0.0
Identities = 472/517 (91%), Gaps = 17/517 (3%)
Strand=Plus/Plus
Query 4 ATGAGAGGCGTCACACCCATAAACCCTCAGAAGAAGATAGAAGCTGATTCGAATCCCGTC 63
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAGAGGCGTCACACCCATAAACCCTCAGAAGAAGATGGAAGCTGATTCGAATCCCGTC 60
Query 64 AAAGAATCTGATTACTATGAAGGCGAACGTCTTACTCATCTACTCGACTTGATTCAGAGA 123
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGAATCAGATTACTATGAAGGCGAACGTCTTACTCATCTACTCGACTTGATTCAGAGA 120
Query 124 GGAATTGAGACGTCCAAGCTTTCGAATGTGAACTCATTACCTGAGAAGATATGGCTCAAG 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GGAATTGAGACGTCCAAGCTTTCGAATGTGAACTCATTGCCTGAGAAGATATGGCTCAAG 180
Query 184 AAGCAAATAGCGATTGGGATCAACGAAGTCACTCGAGTTCTTGAGAGGATGAA-TCCCAA 242
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 181 AAACAAATCGCGATTGGGATCAACGAAGTCACTCGTGTTCTTGAGAGGATGAAATCC-AA 239
Query 243 CAATACTAGTGACCAACAACAAAACCCTA-A--AC---------AACTTCAGGTAGTGAT 290
|| |||| | |||||||||||||||||| | || ||||||||||||||||
Sbjct 240 CACTACT-G--ACCAACAACAAAACCCTAGACCACCTCCGGTTCAACTTCAGGTAGTGAT 296
Query 291 TTTAGTAGCAGATTGTAAACCGAGGATGCTGACCAAGCATATACCCAACTTAGCTGCTTC 350
| |||||||||||||||||||||||| ||| || |||||||||||||||||||| |||||
Sbjct 297 TGTAGTAGCAGATTGTAAACCGAGGACGCTAACGAAGCATATACCCAACTTAGCGGCTTC 356
Query 351 GAGAAACGTTCCGGTTCTCTATGTAAGGGACAACAAACGAGCCTCTCTCAGATTAGGTGA 410
|| || ||||||||||||||| || | ||||||||||||||||||||||||||||| ||
Sbjct 357 CAGGAATGTTCCGGTTCTCTATATACGAGACAACAAACGAGCCTCTCTCAGATTAGGAGA 416
Query 411 GTTGGTTAAGCTCAAGACGGCTCTAGCCATCGGTATCAAGGCTAGAGGAAATGATCTCAA 470
| ||||||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||
Sbjct 417 GCTGGTTAAGCTCAAGACGGCACTAGCCATTGGTGTCAAGGCTAGAGGAAACGATCTCAA 476
Query 471 CCTACTACTTAAACAGATTCTTCCGAGAGATTCTTGA 507
||||||||| ||||||||||| | ||||||||||||
Sbjct 477 TCTACTACTTCAACAGATTCTTACTAGAGATTCTTGA 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22454398113
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5