BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01840.1
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490395 jgi|Araly1|490395|fgenesh2_kg.6__3529__AT4G01840.1 1844 0.0
> Ahg490395 jgi|Araly1|490395|fgenesh2_kg.6__3529__AT4G01840.1
Length=1408
Score = 1844 bits (998), Expect = 0.0
Identities = 1316/1458 (90%), Gaps = 67/1458 (5%)
Strand=Plus/Plus
Query 59 cttttcttttggcgttttccgtttg-----gtaaaagatttcatttttatt-agcttttc 112
|||||||||||| ||||||||||| ||||| |||||||||||||| || |||
Sbjct 1 CTTTTCTTTTGGATTTTTCCGTTTGTCCCCATAAAAAATTTCATTTTTATTAAG--TTT- 57
Query 113 AAGATTCAGAGATTCCTAATTTGTTGGTAAAT-G-G-A--ACC-A---CTCATCAGCCCA 163
|| |||||||||| |||||||||||||| | | | ||| | |||||||||||
Sbjct 58 ----TT-AGAGATTCCTCATTTGTTGGTAAATGGAGAATCACCAACCTCTCATCAGCCCT 112
Query 164 CAACCACGTTTCCGCCTCCAACCCATACCGGAAAAtccctcctcctcctcctcctccgcc 223
||| ||||||||||||||||||| |||||||||||| | | ||||||||||||||||
Sbjct 113 CAATCACGTTTCCGCCTCCAACCAATACCGGAAAAT--C-CAGACTCCTCCTCCTCCGCC 169
Query 224 tccATCACAATCCCTCGCTCTATCTCAAACACTTCCTTCTTCCATGAAATCTCCCAAGAA 283
|||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 170 GCCATAACAATCCCTCGCTCAATCTCAAACACTTCCTTCTTCCACGAAATCTCCCAAGAA 229
Query 284 CGTCTTCTCCTTCATCATCAAGACCTCGAACAATCCGTACAAGACGACAAAGAAGACCAA 343
|||||||| | |||||||||||||||||| ||||||||||||||||| | | ||| ||
Sbjct 230 CGTCTTCT-C--CATCATCAAGACCTCGAAGAATCCGTACAAGACGAC--A-ACGACGAA 283
Query 344 GACTCAGACTCAGACGAAACAAATCGCTTTTTATCTCAGACAAGACCACTTCACCGATCT 403
|||||||||||||||||||||||||| ||||| || | || ||||||||||||||||||
Sbjct 284 GACTCAGACTCAGACGAAACAAATCGGTTTTTGTCAAACACTAGACCACTTCACCGATCT 343
Query 404 CGTACAGCTCCAGCTATGGTAATCATCAAAGACTTAAGAACCAAACCTCCAGAAACCAAA 463
||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 344 CGTACAGCTCCAGCTATGGTAATCATCAAAGACTTAAGACCCAAAAATCAAGAAACCAAA 403
Query 464 AAACCATCACCAGTCTCTAAATCCATAATCAGACAAGCGATTTTCTTGCTAATCGTCTAC 523
|||||||||||| |||| ||||||||||||| |||||| |||||||||||| || |||||
Sbjct 404 AAACCATCACCAATCTCAAAATCCATAATCAAACAAGCTATTTTCTTGCTAGTCATCTAC 463
Query 524 TTAACCTTAGGCGTTTCAATCTACTCATTCAATCGTGACCACTACTCAGGAATCGAAACC 583
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 464 TTAACCTTAGGGGTTTCAATCTATTCATTCAATCGTGACCACTACTCAGGAATCGAAACC 523
Query 584 CATCCTGTAGTCGACGCTCTCTATTTCTGTATCGTCACTATGTGTACTATTGGTTACGGT 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CATCCTGTAGTCGACGCTCTCTATTTCTGTATCGTCACTATGTGTACTATTGGTTACGGT 583
Query 644 GACATCGCTCCGTTGACTCCATGGACAAAGATCTTCGCTGTTGTTTTCGTCTTGTTCGGA 703
|||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||
Sbjct 584 GACATCGCTCCGTTGACTCCATGGACCAAGATCTTCGCCGTTGTTTTCGTTTTATTCGGG 643
Query 704 TTCGGGTTCTTGGATATTTTACTCAGTGGTGTTGTTAACTACGTTTTGGATCTTCAAGAG 763
||||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct 644 TTCGGGTTCTTGGATATCTTACTAAGTGGTGTCGTTAATTACGTCTTGGATCTTCAAGAG 703
Query 764 AGTATGATTCTCACCGGAATCCAAACGAGGCAGCATCATCAACACCATCATCATCATAGA 823
|||||||||||||||||||||||||||| |||||| ||||| ||||| | |||| ||
Sbjct 704 AGTATGATTCTCACCGGAATCCAAACGAAGCAGCACCATCACCACCA-C--CATC---GA 757
Query 824 TTCTCTGCTAAAGATTATATTATTGATTTTGAGAAAGGGAGGATGAGGATAAGGATGAAA 883
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 758 TTCTCTGCTAAAGATTACATAATTGATTTTGAGAAAGGGAGGATGAGGATAAGGATGAAA 817
Query 884 GTTTGTTTAGCGTTATGCGTCGTCGTTTTGTGTATCGGTGTTGGTGCTTTGGTTTTGCAT 943
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 818 GTTGGTTTAGCGTTATGCGTCGTCGTTTTGTGTATTGGTGTTGGTGCTTTGGTTTTGCAT 877
Query 944 TTCGTTGAGGAATTGGGTTTTGTTGATTCGGTTTATTTGTCGGTTATGTCGGTGACTACT 1003
|| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 878 TTTGTTGAAGAATTGGGTTTTGTTGATTCGGTTTATTTGTCGGTTATGTCTGTGACTACC 937
Query 1004 GTTGGTTATGGTGATCGTGCTTTTAAAACGCTTCAAGGGAGGCTTTTTGCGGCGGTTTGG 1063
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 GTTGGTTATGGTGATCGAGCTTTTAAAACGCTTCAAGGGAGGCTTTTTGCGGCGGTTTGG 997
Query 1064 CTACTTGTTTCGACTCTTGCGGTGGCGCGTGCGTTTTTGTATTTGGCGGAAGCGAGAATT 1123
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 998 CTTCTTGTTTCCACTCTTGCGGTGGCGCGTGCGTTTTTGTATTTGGCGGAAGCGAGGATT 1057
Query 1124 GATCGCCGGCATCGGAAAGCTGTTAAATTGGCGTTGAATAGAGAAATCACTGTTGATGAT 1183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1058 GATCGCCGGCATCGGAAAGCTGTTAAATTGGCGTTGAATAGAGAAATCACTGTTGAGGAT 1117
Query 1184 TTGCTCAAAGCTGATACTTATCAACATGGTTTCATCAGTAAATCAGAGTATATAGTGTTG 1243
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1118 TTGCTCAAAGCTGATACTTATCATCATGGTTTCATCAGTAAATCAGAGTATATAGTGTTC 1177
Query 1244 AAGCTTAAGGAAATGGGGAAGATCACTCAGAAAGACATTGACCAAGTTGTGATTCAGTTC 1303
||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||
Sbjct 1178 AAGCTTAAGGAAATGGGGAAGATCACTGAGAAAGACATTAACCAAGTTGGGATGCAGTTC 1237
Query 1304 GAGAAACTTGATCCTAATCAAAT-AGGAAAAATCACATTACCTGATCTTTTGGG-GGATC 1361
|||||||||||||||||| || | |||||||||||||||||||||||||||||| || ||
Sbjct 1238 GAGAAACTTGATCCTAAT-AATTTAGGAAAAATCACATTACCTGATCTTTTGGGTGG-TC 1295
Query 1362 CTTTGTGACAGAAGAACAttctctgtctctgcttttttaggttttcttcttattcaatta 1421
|||||||||| |||||||||||| ||||| | | | | ||| || | |
Sbjct 1296 CTTTGTGACAAAAGAACATTCTC---CTCTG-TCTCT--G-----CTT-TT-T--A---- 1336
Query 1422 tcttctctttttttaattcctttttaAAGAAAAATAACTGAATATATGTAGCAACAGTGA 1481
||| ||||||||| || |||| || ||||||||||||||||||||||||| ||||||
Sbjct 1337 -CTT-TCTTTTTTTC-TT--TTTTCAA-GAAAAATAACTGAATATATGTAGCAGCAGTGA 1390
Query 1482 TTCATACAAAGAATTATC 1499
||||||||||||||||||
Sbjct 1391 TTCATACAAAGAATTATC 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59001789505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5