BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01850.1
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943560 jgi|Araly1|943560|scaffold_604104.1 1914 0.0
Ahg470210 jgi|Araly1|470210|fgenesh2_kg.1__164__AT1G02500.1 1101 0.0
Ahg934322 jgi|Araly1|934322|scaffold_402310.1 822 0.0
> Ahg943560 jgi|Araly1|943560|scaffold_604104.1
Length=1226
Score = 1914 bits (1036), Expect = 0.0
Identities = 1136/1186 (96%), Gaps = 0/1186 (0%)
Strand=Plus/Plus
Query 87 AGCTTTAAGAAATGGAGACTTTCCTATTCACATCTGAGTCTGTGAACGAAGGACACCCTG 146
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 10 AGCTTTAAGAGATGGAGACTTTCCTTTTCACATCTGAGTCTGTGAACGAAGGACACCCAG 69
Query 147 ACAAGCTTTGCGACCAGATCTCTGATGCAGTCCTTGATGCCTGCCTTGAGCAAGACCCTG 206
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 70 ACAAGCTTTGCGACCAGATCTCTGATGCAGTCCTCGATGCCTGCCTTGAGCAAGACCCTG 129
Query 207 ATAGCAAAGTTGCTTGTGAGACATGCACCAAGACCAACATGGTCATGGTTTTCGGTGAGA 266
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 130 ACAGCAAAGTTGCTTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTCGGTGAGA 189
Query 267 TCACCACCAAGGCTACGATTGACTACGAGAAGATTGTCCGTGACACTTGCCGTTCCATTG 326
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 190 TCACCACCAAGGCCACTATTGACTACGAGAAGATTGTCCGTGACACTTGCCGCTCCATTG 249
Query 327 GATTCATCTCTGACGATGTTGGTCTTGATGCTGACAAATGCAAAGTCCTTGTTAACATTG 386
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 250 GATTCATCTCTGATGATGTTGGTCTTGATGCTGACAAATGCAAAGTCCTTGTCAACATTG 309
Query 387 AACAACAGAGCCCAGACATTGCTCAAGGTGTTCACGGTCACTTCACCAAACGTCCAGAAG 446
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 310 AACAACAGAGCCCAGACATTGCTCAAGGTGTTCACGGTCATTTCACCAAACGACCAGAAG 369
Query 447 ACATTGGAGCTGGTGACCAAGGACACATGTTTGGTTATGCCACTGATGAAACCCCTGAGC 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 ACATTGGAGCTGGTGACCAAGGACACATGTTTGGTTATGCCACTGATGAAACCCCTGAGC 429
Query 507 TCATGCCTTTGAGTCATGTCCTTGCAACCAAGATTGGTGCTCGTCTCACTGAAGTCAGGA 566
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TCATGCCTTTGAGCCATGTCCTTGCAACCAAGATTGGTGCTCGTCTCACTGAAGTCAGGA 489
Query 567 AGAATGGAACTTGCCGTTGGTTAAGACCAGATGGCAAGACCCAAGTCACTGTTGAGTACT 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 AGAATGGAACTTGCCGTTGGTTAAGACCAGATGGCAAGACCCAAGTCACTGTTGAGTACT 549
Query 627 ACAATGACAATGGCGCTATGGTTCCAGTCCGTGTCCACACCGTCCTGATCTCAACCCAGC 686
|||| ||||| || |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 550 ACAACGACAACGGTGCTATGGTTCCAGTTCGTGTCCACACTGTCCTGATCTCAACCCAGC 609
Query 687 ACGATGAAACCGTTACCAATGACGAGATTGCGCGTGACCTCAAGGAGCATGTGATCAAAC 746
||||||||||||| ||||| || |||||||| |||||||||||||| || ||||| || |
Sbjct 610 ACGATGAAACCGTGACCAACGATGAGATTGCACGTGACCTCAAGGAACACGTGATTAAGC 669
Query 747 CAATCATCCCAGAGAAATACCTTGACGACAAAACCATCTTCCACCTCAACCCATCAGGCC 806
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 CAATCATTCCAGAGAAATACCTTGACGACAAAACCATCTTCCACCTCAACCCATCAGGCC 729
Query 807 GGTTTGTGATCGGGGGACCACACGGTGATGCTGGTTTAACTGGACGTAAGATCATCATTG 866
|||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||| |
Sbjct 730 GGTTCGTGATCGGGGGACCACACGGTGACGCTGGTTTGACCGGACGTAAGATCATCATCG 789
Query 867 ACACATACGGAGGATGGGGAGCTCATGGAGGTGGTGCTTTCTCAGGCAAAGACCCAACCA 926
|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 790 ACACATACGGTGGATGGGGAGCTCACGGAGGAGGTGCTTTCTCAGGCAAAGACCCAACCA 849
Query 927 AAGTCGACAGAAGTGGAGCTTACATCGTGAGGCAAGCAGCAAAGAGTGTGGTGGCTAATG 986
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 850 AAGTTGACAGAAGTGGAGCTTACATCGTGAGGCAGGCAGCAAAGAGTGTGGTGGCTAATG 909
Query 987 GCATGGCTCGCAGGGCTCTTGTCCAGGTCTCATACGCCATTGGAGTACCCGAGCCATTGT 1046
| |||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 910 GAATGGCTCGTAGGGCTCTTGTCCAAGTCTCATACGCCATTGGTGTCCCCGAGCCATTGT 969
Query 1047 CTGTCTTCGTTGACACTTACGGAACAGGGTTGATTCCAGACAAGGAGATCCTGAAGATCG 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 CTGTCTTCGTTGACACTTACGGAACAGGGTTGATTCCAGACAAGGAGATCCTGAAGATCG 1029
Query 1107 TGAAAGAGACATTCGATTTCAGACCAGGAATGATGACAATCAACTTGGACTTGAAGAGAG 1166
|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1030 TGAAAGAGACCTTTGATTTCAGACCAGGAATGATGACAATTAACTTGGACTTGAAGAGAG 1089
Query 1167 GAGGAAATGGAAGGTTTCAGAAAACGGCAGCGTATGGACATTTCGGAAGAGACGACCCTG 1226
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 GAGGAAATGGAAGGTTTTTGAAAACGGCAGCGTATGGACATTTCGGAAGAGACGACCCTG 1149
Query 1227 ACTTCACCTGGGAGGTCGTGAAGCCACTCAAGTGGGACAAACCTCA 1272
| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1150 ATTTCACTTGGGAGGTCGTGAAGCCACTCAAGTGGGACAAACCTCA 1195
> Ahg470210 jgi|Araly1|470210|fgenesh2_kg.1__164__AT1G02500.1
Length=1458
Score = 1101 bits (596), Expect = 0.0
Identities = 860/989 (87%), Gaps = 12/989 (1%)
Strand=Plus/Plus
Query 298 GATTGTCCGTGACACTTGCCGTTCCATTGGATTCATCTCTGACGATGTTGGTCTTGATGC 357
||||||||||||||| || || |||||||||| ||||||| |||||||||||||||||
Sbjct 265 GATTGTCCGTGACACCTGTCGCGCCATTGGATTTGTCTCTGATGATGTTGGTCTTGATGC 324
Query 358 TGACAAATGCAAAGTCCTTGTTAACATTGAACAACAGAGCCCAGACATTGCTCAAGGTGT 417
|||||| ||||||||||| || |||||||| |||||||||||||||||||| ||||| ||
Sbjct 325 TGACAAGTGCAAAGTCCTAGTCAACATTGAGCAACAGAGCCCAGACATTGCCCAAGGAGT 384
Query 418 TCACGGTCACTTCACCAAACGTCCAGAAGACATTGGAGCTGGTGACCAAGGACACATGTT 477
||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||
Sbjct 385 TCACGGTCACTTCACCAAATGTCCTGAAGACATTGGAGCCGGTGACCAAGGCCACATGTT 444
Query 478 TGGTTATGCCACTGATGAAACCCCTGAGCTCATGCCTTTGAGTCATGTCCTTGCAACCAA 537
|||||| || || ||||||||||||||| | ||||| |||| ||||| ||||| |||||
Sbjct 445 TGGTTACGCTACCGATGAAACCCCTGAGTTAATGCCCCTGAGCCATGTTCTTGCCACCAA 504
Query 538 GATTGGTGCTCGTCTCACTGAAGTCAGGAAGAATGGAACTTGCCG-TTGGTTAAGACCAG 596
| | |||||||| || || |||||||| |||||||| ||||| || |||| ||||||| |
Sbjct 505 GCTCGGTGCTCGCCTAACAGAAGTCAGAAAGAATGGTACTTG-CGCTTGGCTAAGACCTG 563
Query 597 ATGGCAAGACCCAAGTCACTGTTGAGTACTACAATGACAATGGCGCTATGGTTCCAGTCC 656
| ||||| |||||||||||||||||||||||||| || || || || ||||| ||| |||
Sbjct 564 ACGGCAAAACCCAAGTCACTGTTGAGTACTACAACGATAAGGGTGCCATGGTCCCAATCC 623
Query 657 GTGTCCACACCGTCCTGATCTCAACCCAGCACGATGAAACCGTTACCAATGACGAGATTG 716
|||||||||| ||||| ||||| ||||| ||||||||||| || ||||| ||||| || |
Sbjct 624 GTGTCCACACAGTCCTCATCTCCACCCAACACGATGAAACTGTGACCAACGACGAAATCG 683
Query 717 CGCGTGACCTCAAGGAGCATGTGATCAAACCAATCATCCCAGAGAAATACCTTGACGACA 776
| |||||||| ||||||||||| ||||| || ||||||||||||| ||||| ||||| |
Sbjct 684 CCCGTGACCTTAAGGAGCATGTCATCAAGCCGGTCATCCCAGAGAAGTACCTAGACGAGA 743
Query 777 AAACCATCTTCCACCTCAACCCATCAGGCCGGTTTGTGATCGGGGGACCACACGGTGATG 836
|||||||||| ||| | |||||||||||||| || || ||||| ||||| || || || |
Sbjct 744 AAACCATCTTTCACTTGAACCCATCAGGCCGATTCGTCATCGGTGGACCCCATGGAGACG 803
Query 837 CTGGTTTAACTGGACGTAAGATCATCATTGACACATACGGAGGATGGGGAGCTCATGGAG 896
||||| | || || |||||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 804 CTGGTCTCACCGGGCGTAAGATCATCATCGACACCTACGGTGGATGGGGAGCTCACGGAG 863
Query 897 GTGGTGCTTTCTCAGGCAAAGACCCAACCAAAGTCGACAGAAGTGGAGCTTACATCGTGA 956
| ||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||||| ||||
Sbjct 864 GCGGTGCATTCTCTGGCAAAGACCCAACCAAGGTCGACAGAAGCGGAGCCTACATTGTGA 923
Query 957 GGCAAGCAGCAAAGAGTGTGGTGGCTAATGGCATGGCTCGCAGGGCTCTTGTCCAGGTCT 1016
| |||||||| ||||| || |||||||| || |||||||| ||||||||||| |||||||
Sbjct 924 GACAAGCAGCTAAGAGCGTTGTGGCTAACGGGATGGCTCGTAGGGCTCTTGTTCAGGTCT 983
Query 1017 CATACGCCATTGGAGTACCC-GAGCCATTGTCTGTCTTCGTTGACACTTACGGA-ACAGG 1074
|||||||||||||||| ||| ||||||||||||||||| || ||||||||| || || ||
Sbjct 984 CATACGCCATTGGAGT-CCCTGAGCCATTGTCTGTCTTTGTGGACACTTAC-GAGACTGG 1041
Query 1075 GTTGATTCCAGACAAGGAGATCCTGAAGATCGTGAAAGAGA-CATTCGATTTCAGACCAG 1133
|||||||||||||||||||| || ||||| ||||| |||| | ||||| ||||||||||
Sbjct 1042 TTTGATTCCAGACAAGGAGATACTAAAGATTGTGAAGGAGAGC-TTCGACTTCAGACCAG 1100
Query 1134 GAATGATGACAATCAA-CTTGGACTTGAAGAGAGGAGGAAATGGAAGGTTTC-AGAAAAC 1191
||||||||||||| || ||| ||| | |||||||||||||| |||||| ||| ||||||
Sbjct 1101 GAATGATGACAATTAACCTT-GACCTAAAGAGAGGAGGAAACGGAAGG-TTCTTGAAAAC 1158
Query 1192 GGCAGCGTATGGACATTTCGGAAGAGACGACCCTGACTTCACCTGGGAGGTCGTGAAGCC 1251
|| ||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1159 TGCGGCGTACGGACACTTCGGAAGAGACGACCCTGACTTCACCTGGGAAGTCGTCAAGCC 1218
Query 1252 ACTCAAGTGGGACAAACCTCAAGCTTAAA 1280
|||||||||||||||||||||||||||||
Sbjct 1219 ACTCAAGTGGGACAAACCTCAAGCTTAAA 1247
> Ahg934322 jgi|Araly1|934322|scaffold_402310.1
Length=1289
Score = 822 bits (445), Expect = 0.0
Identities = 951/1191 (80%), Gaps = 52/1191 (4%)
Strand=Plus/Plus
Query 94 AGAAATGGAGACTTTCCTATTCACATCTGAGTCTGTGAACGAAGGACACCCTGACAAGCT 153
||||||||| || |||||||| || ||||| || || || || |||||||| ||||||||
Sbjct 19 AGAAATGGAAACCTTCCTATTTACCTCTGAATCCGTCAATGAGGGACACCCAGACAAGCT 78
Query 154 TTGCGACCAGATCTCTGATGCAG-TCCTTGATGCCTGCCTT-GAGCAAGACCCTGATAGC 211
||| |||||| | |||||||| | |||| ||||| || ||| |||||||||||||| |||
Sbjct 79 TTGTGACCAGGTTTCTGATGC-GATCCTCGATGCTTG-CTTAGAGCAAGACCCTGAAAGC 136
Query 212 AAAGTTGCTTGTGAGACATGCACCAAGACCAACATGGTCATGGT-TTTCGGTGAGATCAC 270
||||| || ||||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 137 AAAGTGGCGTGTGAGACATGCACCAAGACCAACATGGTGATGGTGTTT-GGTGAGATCAC 195
Query 271 CACCAAGGCTACGATTG-ACTACGAGAAGATTGTCCG-TGACACTTGCCGTTCCATTGGA 328
||| || | | || |||| ||||||||||| | | ||||||| | |||||
Sbjct 196 TACCTCTGCGAA-AGTGGACTATGAGAAGATTGTTAGATC-CACTTGCAGGGAGATTGGG 253
Query 329 TTCATCTCTGACGATGTTGGTCTTGATGCTGACAAATGCAAAGTCCTTG-TTAACATTGA 387
|| ||||| | ||||||||||||||| |||||||||||||| || ||| ||||||||||
Sbjct 254 TTTATCTCGGCCGATGTTGGTCTTGACGCTGACAAATGCAATGTT-TTGGTTAACATTGA 312
Query 388 ACAACAGAGCCCAGACATTGCTCAAGGTGTTCACGGTCACTTCACCAA-ACGTCCAGAAG 446
|||||||| || || |||||||| |||||||| ||||| || ||||| | | || ||||
Sbjct 313 GCAACAGAGTCCTGATATTGCTCAGGGTGTTCATGGTCATTTGACCAAGAAG-CCTGAAG 371
Query 447 ACATTGGAGCTGGTGACCAAGGACACATGTTTGGTTATGCCACTGATGAAACCCCTGAGC 506
| ||||| |||||||| || ||||| |||||||| ||||| |||||||| || |||||||
Sbjct 372 ATATTGGTGCTGGTGATCAGGGACATATGTTTGGGTATGCTACTGATGAGACTCCTGAGC 431
Query 507 TCATGCCTTTGAGTCATGTCCTTGCAACCAAGATTGGTGCTC-GTCTCACTGAAGTCAGG 565
| ||||| |||| ||| ||||| || |||||| |||||||| | ||||||||||| |||
Sbjct 432 TTATGCCCTTGACTCACGTCCTAGCTACCAAGCTTGGTGCTAAG-CTCACTGAAGTGAGG 490
Query 566 AAGAATG-GAACTTGCCGTTGGTTAAGACCAGATGGCAAGACCCAAGTCACTGTTGAGTA 624
||||| || |||||| ||||| || || ||||| |||||||| ||||| || |||||
Sbjct 491 AAGAACAAGA-CTTGCCCATGGTTGAGGCCTGATGGTAAGACCCAGGTCACAGTGGAGTA 549
Query 625 CTACAATGACAATGGCGCTATGGTTCC-AGTCCGTGTCCACACCGTCCTGATCTCAACCC 683
| | || || ||| |||||| |||| | | | |||||||| || || |||||||| |
Sbjct 550 CAAGAACGATGGTGGAGCTATGATTCCGATTA-GAGTCCACACGGTGCTCATCTCAACTC 608
Query 684 AGCACGATGAAACCGTTACCAATGACGAGATTGC-GCGTGACCTCAAGGAGCATGTGATC 742
| || || ||||| || ||||| ||||||||||| || |||| | |||||||||||||||
Sbjct 609 AACATGACGAAACTGTCACCAACGACGAGATTGCTGC-TGACTTGAAGGAGCATGTGATC 667
Query 743 AAACCAATCATCCCAGAGAAATACCTTGACGACAAAACCATCTTCCACCTCAACCCATCA 802
|| || | ||||| | || ||||||||||| || |||||||| ||| | ||||||||
Sbjct 668 AAGCCGGTTATCCCTGCTAAGTACCTTGACGATAACACCATCTTTCACTTGAACCCATCT 727
Query 803 GGCCGGTTTGTGATCGG-GGGACCACACGGTGATGCTGGT-TTAACTGG-ACGTAAGATC 859
|| || ||||| ||||| ||| || || ||||||||||| ||| |||| | | ||||||
Sbjct 728 GGTCGTTTTGTCATCGGAGGG-CCTCATGGTGATGCTGGACTTA-CTGGGAGG-AAGATC 784
Query 860 ATCATTGACACATACGGAGGATGGGGAGCTCATGGAGGTGGTGCTTTCTCAGGCAAAG-A 918
||||||||||| || || || ||||| |||||||| || ||||| |||||||| |||| |
Sbjct 785 ATCATTGACACTTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCAGG-AAAGGA 843
Query 919 CCCAACCAAAGTCGACAGAAGTGGAGCTTACATCGTGAGGCAAGCAGCAAAGAGTGTGGT 978
||||||||| || ||||||||||| || || ||||||||||| || ||||||||||||||
Sbjct 844 CCCAACCAAGGTTGACAGAAGTGGTGCCTATATCGTGAGGCAGGCTGCAAAGAGTGTGGT 903
Query 979 GGCTAATGGCATGGCTCGCAGG--GCTCT-T-GTCCAGGTCTCATACGCCATTGGAGTAC 1034
|| | | || |||||||| | ||| | | || ||||| |||||||||||||| || |
Sbjct 904 AGC-A--G-CAGGGCTCGCACGCCGCTGTATCGTGCAGGTATCATACGCCATTGGTGT-C 958
Query 1035 CC-GAGCCATTGTCTGTCTTCGTTGACACTTACG-GAACAGGGTTGATTCCAGACAAGGA 1092
|| ||||| | || || || |||||||| ||| || | ||| || |||||||||||
Sbjct 959 CCTGAGCCGCTCTCAGTGTTTGTTGACACCTACAAGACC-GGGACCATCCCAGACAAGGA 1017
Query 1093 GATCCT-GAAGATCG-TGAAAGA-GACATTCGATTTCAGACCAGGAATGATGACAATCAA 1149
||||| | | | | | || || | |||| || ||||| || ||||||||| | || ||
Sbjct 1018 TATCCTTGT-GTT-GATCAAGGAAG-CATTTGACTTCAGGCCGGGAATGATGGCCATTAA 1074
Query 1150 C-TTGGACTTGAAGAGAGGAGGAAA-TGGAAGGTTTCAGAAAACGGCAGCGTATGGACAT 1207
| ||| || ||||||| ||||| || | | |||| |||||||| || |||||||| |||
Sbjct 1075 CCTTG-ACCTGAAGAGGGGAGGTAACTTCA-GGTTCCAGAAAACCGCTGCGTATGGCCAT 1132
Query 1208 TTCGGAAGAGACGACCCTGACTTCACCTGGGAGGTCGTGAAGCCACTCAAG 1258
||||| | || |||||||||||||| ||||||||||| ||||| ||||||
Sbjct 1133 TTCGGGCGTGATGACCCTGACTTCACTTGGGAGGTCGTCAAGCCGCTCAAG 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5