BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01880.1
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490389 jgi|Araly1|490389|fgenesh2_kg.6__3523__AT4G01880.1 2135 0.0
> Ahg490389 jgi|Araly1|490389|fgenesh2_kg.6__3523__AT4G01880.1
Length=1456
Score = 2135 bits (1156), Expect = 0.0
Identities = 1341/1429 (94%), Gaps = 18/1429 (1%)
Strand=Plus/Plus
Query 22 GAGCAAAACTCTGGCTGAGAGAATGGAGGCGAAAAGTAGCAATCGATGCAGTTTCTGGCT 81
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 GAGC-AAACTCTGGCTGAGAGAATGGAGGCGAAAAGTAGCAATCGATGCAGTTTCTGGCT 71
Query 82 TCCGAAGAAGAAAAGATCATGCGCGAATACTCGAATCGAGAGTTCTATGTTTTGTGGAAA 141
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 72 TCCGAAGAAGAAAAGATCATGCGCGAATACTCGAATCAAGAGTTCCATGTTTTGTGGAAA 131
Query 142 CCATAGCCAGAGATTGGAAGGTCAATGGATTCCATGCCCTATTGATCCTTCTCACTCTGT 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 CCATAGCCAGAGATTGGAAGGTCAATGGATTCCATGCCCTATTGATCCTTCTCACTCTGT 191
Query 202 GTTGCAGGAGAATCTCGAATGGCATGTAAAGAGATGTCCTTTACTTAAACAAACTGTAGA 261
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GTTGCAGGAGAATCTCGAATGGCATGTAAAGAGATGTCCTTTACTTAAACAAACTGTAGC 251
Query 262 ATTGTCTGGTCAACGATTTTATCAGAAGGGTATTAATGCTGGGAAC---GACGAAGAAGA 318
|||||||||||||||||||||||||||||| |||||||| || ||| || ||||||||
Sbjct 252 ATTGTCTGGTCAACGATTTTATCAGAAGGGCATTAATGCCGGAAACGAAGAAGAAGAAGA 311
Query 319 AGAAAAGATGGGATC------TT--G-TTCTCTTGTTACTTCAGAGATGAAGAGAAATCT 369
||||||| ||||||| || | |||||||||||||||||||||||||||||| ||
Sbjct 312 AGAAAAGTTGGGATCTTGTTATTCGGATTCTCTTGTTACTTCAGAGATGAAGAGAAAGCT 371
Query 370 GCTCTATAGTATGAGTGTTTCTAAGTTTCATCAGCTTATTAAGAAAATTGAGGATGTTCA 429
|||||||||||||| |||||| ||||||||||||| |||||||||| ||||| ||||||
Sbjct 372 TCTCTATAGTATGAGCGTTTCTCAGTTTCATCAGCTAATTAAGAAAACTGAGGCTGTTCA 431
Query 430 TGGCGGTATTTGTAAAGATATCGAAGATTCGTATTTGTCACCTGAAGCTTGTAACATATG 489
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 432 TGGCGGTATATGTAAAGAGATCGAAGATTCGTATCTGTCACCTGAAGCTTGTAACATATG 491
Query 490 GTTTAATAAGGAGATAGATAGGAAATTACCATTTCAAGAGAAACATGTTTTGCAGCAAGG 549
||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 492 GTTTAATAAAGAGATAGATAGGAAATTACCGTTTCAAGAAAAACATGTTTTGCAGCAAGG 551
Query 550 TTCAATTCTTGGTAACTTGGAAGAGATTGGTGTATTGAAGAGGTGCAACATAAATGTGGA 609
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 552 TTCGATTCTTGGTAACTTGGAAGAGATTGGTGCATTGAAGAGGTGCAACATAAATGTGGA 611
Query 610 ATGTTGCGAAAGCGATCTGGAAGAGAAAGACGATAATACTGCGCCAGCGGTTGTTGAATT 669
|||||| ||||| |||||| |||||||||||||||| | || | | ||||||||||||||
Sbjct 612 ATGTTGTGAAAGTGATCTGAAAGAGAAAGACGATAACAGTGTGTCGGCGGTTGTTGAATT 671
Query 670 TGGCGCTGGGAGAGGATACTTAACACAGATGCTAGCAGATTGCTATGGGATCAAAAAAGT 729
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 672 TGGCGCTGGGAGAGGATACTTAACACAGATGCTAGCAGATTGCTATGGGATAAAAAAAGT 731
Query 730 GTATCTAGTTGAGAGGAAATCTTACAAGCTTAAGGCTGATAGGTCATTGAGGCAAAAGGA 789
|||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct 732 GTATCTTGTTGAGAGGAAATCTTATAAGCTTAAGGCTGATCGGTCGTTGAGGCAAAAGGA 791
Query 790 GAGCTTAGTATTAGAGCGTATGAGAATCGATATTGAGGATTTGAACCTTAACGCGGTTGA 849
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 792 GAACTTAGTATTAGAGCGTATGAGAATCGATATTGAGGATTTGAACCTTAACGTGGTTGA 851
Query 850 ATCTTTGCACGGTGTTCCTTATGTGGCCGTAGGGAAACATCTCTGTGGTCCTGCAACAGA 909
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 852 ATCTTTGCACGGTGTTCCTTATGTGGCTATTGGGAAACATCTCTGTGGTCCTGCAACAGA 911
Query 910 TTTGAGCTTAAGATGTTGTTTATCCAGACAAGATGGTGAAAGCCCAGTACTTAGAGGTCT 969
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 912 TTTGAGCCTAAGATGTTGTTTATCCAGACAAGATGGTGAAAGCCCGGTACTTAGAGGTCT 971
Query 970 CGCTATTGCGACTTGTTGCCATCATCTTTCCCAATGGAAAAGCTACATAAATAAAGAATA 1029
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 972 CGCTATTGCGACTTGTTGCCATCATCTTTGCCAATGGAAAAGCTACATAAATAAAGAATA 1031
Query 1030 TATCCTT-AGCCTGGGGATTTCCAAGGACGAGTTCCATATCATGACTTCGTTCACTAGCT 1088
|||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1032 TATC-TTGAGCCTAGGGATTTCCAAAGACGAGTTCCATATCATGACTTCGTTCACTAGCT 1090
Query 1089 GGGCAGTAGATGATGATCACGGTTCCAAGCTTCCCGGTGTTGATGACATTGACCTTCTTG 1148
|||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 1091 GGGCTGTAGATGATGATCACGGTTCCAATCTTCCCGGTGTTGACGACATTGACCTTCTCG 1150
Query 1149 ATTCAAATGCAAAGGAGGAGGAAGAAGGAGAAGTAAGAGATGCTTCTTTGATCAGCGTGG 1208
|||||||||||| ||||| |||||||||||||| ||||||| ||| |||| ||||||||
Sbjct 1151 CTTCAAATGCAAAAGAGGAAGAAGAAGGAGAAGTGAGAGATGATTCGTTGAGCAGCGTGG 1210
Query 1209 AGGAAGTTGTGAAGAAAATGAAACCCATGGAAAGAGCTGTTTTAGGATTCAAATGCAAAC 1268
||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 1211 AGGAAGTTGTGAAGAAAATGAAACCCATGGAGAGAGCTGTTTTAGGGTTTAAATGCAAAC 1270
Query 1269 AGATCATCGATGCAGGGAGGATGAAGTGGGTTAA---GAAACATGGATTAAATTCAAAGC 1325
|||| || ||||||||||| |||||||||||||| ||||||||| ||| |||||||||
Sbjct 1271 AGATAATAGATGCAGGGAGAATGAAGTGGGTTAATAAGAAACATGGGTTAGATTCAAAGC 1330
Query 1326 TAGTGAAGTATATCCCGGCAAGCATCTCGCCGGAAAATACTTTACTGATCGCCGGAAAAC 1385
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 TAGTGAAGTATATCCCTGCAAGCATCTCGCCGGAAAATACTTTACTGATCGCCGGAAAAC 1390
Query 1386 CCAATCCTTCTATTGCTTGATGTTGTATTCTTGTTGGTTATTTAATACT 1434
||||||||||| |||||||||||||||| ||||||||||| | ||||||
Sbjct 1391 CCAATCCTTCTGTTGCTTGATGTTGTATACTTGTTGGTTACTCAATACT 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56754465050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5