BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01890.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327610 jgi|Araly1|327610|fgenesh1_pm.C_scaffold_6002830 1962 0.0
> Ahg327610 jgi|Araly1|327610|fgenesh1_pm.C_scaffold_6002830
Length=1443
Score = 1962 bits (1062), Expect = 0.0
Identities = 1226/1306 (94%), Gaps = 7/1306 (1%)
Strand=Plus/Plus
Query 107 CGTCTCAGCCTCCTTCTCCCTCTCCAAACCCTAACGACCCGTCG---AAATCTCCATCTC 163
||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 140 CGTCTCAGCCTCCTTCTTCCTCTCCAAAAGCTAACGACCCGTCGTCAAAATCTCCATCTC 199
Query 164 GGTCCCAAGATCTCGACCACGAAGTAGTTTACGACGTGAGGAAATACGGTGCGGTCGGTA 223
| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct 200 TGCCCCAAGATCTCGACCACGAAGTAGTCTACAACGTGAAGAAATACGGTGCGGTCGGTG 259
Query 224 ATGGTGTCGCAGATGACACTGTGTCGTTCAAGACAGCTTGGGATTCAGCTTGTAGCAACA 283
|||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 260 ATGGTGTCACAGACGACACTGAATCGTTCAAGACAGCTTGGGATTCAGCTTGTGGCAACT 319
Query 284 ACAAAAACAATACTGCCTCCGTCTTGCATGTGCCTTACGGTTTCACTTTCATGATCCGTT 343
|||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 320 ACAAAAACAACACTGCCTCTGTCTTGCTTGTGCCTTACGGTTTCACTTTCATGATCCGTT 379
Query 344 CCACTATTTTCACTGGTCCTTGTCGCTCTTACCAATACTTCCAAGTTGATGGGACCATCG 403
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 380 CCACTATTTTCACTGGTCCTTGTCGCTCTTACCAATACTTCCAAGTTGACGGGACCATCG 439
Query 404 TGCCACGGGATGGACCAAAGTCGTGGCCAAGCAGTTTAAACAAAAGACAATGGCTCGCCT 463
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||
Sbjct 440 TGCCACGGGATGGACCAAAGTCGTGGCCGAGCAGTTTAGACAAAAGACAATGGCTCGTCT 499
Query 464 TTTATAGAATCAACGGAATGGCTCTACAAGG-CGCCGGAGTTATCGACGGTCGTGGACAA 522
||||||||||||||||||||||| || |||| || ||||||||||||||||||||||||
Sbjct 500 TTTATAGAATCAACGGAATGGCTTTA-AAGGGCGTTGGAGTTATCGACGGTCGTGGACAA 558
Query 523 AATTGGTGGGATCTTCCCTGCAAACCTCATCAGCAGAATGTCAACAAAACTAAACTTGCT 582
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 559 AATTGGTGGGATCTTCCCTGCAAACCTCATCGGCAGAATGTCAACAAAACTAAACTTGCT 618
Query 583 GGTCCATGTGAAAGCCCCGCCGCTTTAAGGTTCTTCATGAGCTCGAATGTAATTGTGAAA 642
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct 619 GGTCCATGCGAAAGCCCCGCGGCTTTGAGGTTCTTCATGAGCTCGAATGTAACTGTGAAA 678
Query 643 GGCCTAAGTATAAAAAACAGCCCTCAGGTTCACCTCAAATTAGATGGATGTCACGTAGTT 702
||||| |||||||| |||||||||||||||||||||||| | || |||||||| || |||
Sbjct 679 GGCCTGAGTATAAAGAACAGCCCTCAGGTTCACCTCAAACTCGACGGATGTCATGTTGTT 738
Query 703 CACATCAACTCCCTTCGAATCATATCTCCGCCGGCTAGTCCCAACACCGACGGTATCCAC 762
|||||||||||| || |||||||||||||| || | ||||||||||| || |||||||||
Sbjct 739 CACATCAACTCCATTAGAATCATATCTCCGTCGTCAAGTCCCAACACTGATGGTATCCAC 798
Query 763 ATTGAGAACTCCAACTCCGTTGAGATTTACAACTCCGTTATCTCCAACGGAGATGATTGT 822
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 ATTGAGAACTCCAAATCCGTTGAGATTTACAACTCCGTTATCTCCAACGGAGATGATTGT 858
Query 823 GTCTCCATAGGACCCGGAGCATACGATATCGATATACGAAATATCACTTGTGGACCAGGA 882
||||| |||||||| ||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 859 GTCTCGATAGGACCTGGATCATACGATATCGATATACGAAATCTCACTTGTGGACCAGGC 918
Query 883 GGGCATGGAATTAGCATTGGAAGTTTGGGAGaaaaaaaCTCACATGCGTGTGTCTCCAAC 942
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 919 GGGCATGGAATTAGCATTGGAAGTTTGGGAGAAAAATCCTCACATGCGTGCGTCTCCAAC 978
Query 943 GTTACGGTTAGAGACTCGTTCATAAAATTTTCCGAAAATGGAGTACGAATCAAGACATGG 1002
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 979 GTTACGGTTAGAGACTCGTTTATAAAATTTTCCGAAAATGGAGTACGGATCAAGACATGG 1038
Query 1003 CAAGGTGGATCAGGGTCCGTTTCGGGTGTAACGTTTGACAATATCCATGTAGATACTGTC 1062
||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1039 CAAGGTGGATCCGGGTCCGTTTCGGGTGTAACATTTAACAATATCCATGTAGATACTGTC 1098
Query 1063 CGGAATCCGATAATCATCGATCAATACTATTGCACGACTAAAAGTTGTGCTAACAAAACA 1122
|| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1099 CGAAATCCGATAATCATCGATCAATACTATTGTACGGCTAAAAGTTGTGCTAACAAAACA 1158
Query 1123 TCAGCGGTTTTTGTGAATGATATAGTATATCAAAGTATAAAAGGCACATACGATATTCGT 1182
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1159 TCGGCGGTTTTTGTGAATGATATAGTATATCAAAGTATAAAAGGCACATACGATATCCGT 1218
Query 1183 AGTCCCCCAATGCATTTTGGATGCAGCAACAATGTCCCGTGCACAAACTTAACACTTTC- 1241
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1219 AGCCCCCCTATGCATTTTGGATGCAGCAACAATGTCCCGTGCACAAACTTAACACTCTCA 1278
Query 1242 GAATATCGAATTGTTACCTTCAAAAGAAGATATTGTTGTGGGTCCGTTCTGTTGGAATGC 1301
|| |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||
Sbjct 1279 GA-TATCGAATTGTTACCTTCAAAAAAAGATATTGTTGTGGATCCCTTCTGTTGGAATGC 1337
Query 1302 GTATGGGATCACGGATGAGTTCTCTGTACCTTTGATCTCGTGTCTCAAATCGAATCCTTC 1361
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1338 GTATGGGATTACGGATGAGTTCTCCGTACCTTTGATCTCGTGTCTTAAATCGAATCCTTC 1397
Query 1362 GACATCGTTGTTAAGTGGTCTTTCAGGGAGGTGTGGATCACCGTGA 1407
||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 GACGTCGTTGTTAAGTGGTCTTTCAGGGAGGTGTGGATCACCGTGA 1443
Score = 128 bits (69), Expect = 1e-28
Identities = 93/104 (89%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 1 ATGTTGAAACTTTCTCGTGATCCGATTCTATGTATCACTACATTAATTCTCATTATAACA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 ATGTTGAAACTGTCTCGTGATCCGATTCTATGTATCACTACATTAATTCTCATCA---CA 57
Query 61 TTTTCTCTCTTATCCTATGGAACTGAAGCAAGGCTACATCATCA 104
|||||| | || | ||||| |||||||||||| |||||||||||
Sbjct 58 TTTTCTTTATTCTTCTATGAAACTGAAGCAAGACTACATCATCA 101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5