BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01890.1 Length=1407 Score E Sequences producing significant alignments: (Bits) Value Ahg327610 jgi|Araly1|327610|fgenesh1_pm.C_scaffold_6002830 1962 0.0 > Ahg327610 jgi|Araly1|327610|fgenesh1_pm.C_scaffold_6002830 Length=1443 Score = 1962 bits (1062), Expect = 0.0 Identities = 1226/1306 (94%), Gaps = 7/1306 (1%) Strand=Plus/Plus Query 107 CGTCTCAGCCTCCTTCTCCCTCTCCAAACCCTAACGACCCGTCG---AAATCTCCATCTC 163 ||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| Sbjct 140 CGTCTCAGCCTCCTTCTTCCTCTCCAAAAGCTAACGACCCGTCGTCAAAATCTCCATCTC 199 Query 164 GGTCCCAAGATCTCGACCACGAAGTAGTTTACGACGTGAGGAAATACGGTGCGGTCGGTA 223 | ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| Sbjct 200 TGCCCCAAGATCTCGACCACGAAGTAGTCTACAACGTGAAGAAATACGGTGCGGTCGGTG 259 Query 224 ATGGTGTCGCAGATGACACTGTGTCGTTCAAGACAGCTTGGGATTCAGCTTGTAGCAACA 283 |||||||| |||| ||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 260 ATGGTGTCACAGACGACACTGAATCGTTCAAGACAGCTTGGGATTCAGCTTGTGGCAACT 319 Query 284 ACAAAAACAATACTGCCTCCGTCTTGCATGTGCCTTACGGTTTCACTTTCATGATCCGTT 343 |||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 320 ACAAAAACAACACTGCCTCTGTCTTGCTTGTGCCTTACGGTTTCACTTTCATGATCCGTT 379 Query 344 CCACTATTTTCACTGGTCCTTGTCGCTCTTACCAATACTTCCAAGTTGATGGGACCATCG 403 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 380 CCACTATTTTCACTGGTCCTTGTCGCTCTTACCAATACTTCCAAGTTGACGGGACCATCG 439 Query 404 TGCCACGGGATGGACCAAAGTCGTGGCCAAGCAGTTTAAACAAAAGACAATGGCTCGCCT 463 |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || Sbjct 440 TGCCACGGGATGGACCAAAGTCGTGGCCGAGCAGTTTAGACAAAAGACAATGGCTCGTCT 499 Query 464 TTTATAGAATCAACGGAATGGCTCTACAAGG-CGCCGGAGTTATCGACGGTCGTGGACAA 522 ||||||||||||||||||||||| || |||| || |||||||||||||||||||||||| Sbjct 500 TTTATAGAATCAACGGAATGGCTTTA-AAGGGCGTTGGAGTTATCGACGGTCGTGGACAA 558 Query 523 AATTGGTGGGATCTTCCCTGCAAACCTCATCAGCAGAATGTCAACAAAACTAAACTTGCT 582 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 559 AATTGGTGGGATCTTCCCTGCAAACCTCATCGGCAGAATGTCAACAAAACTAAACTTGCT 618 Query 583 GGTCCATGTGAAAGCCCCGCCGCTTTAAGGTTCTTCATGAGCTCGAATGTAATTGTGAAA 642 |||||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||||| Sbjct 619 GGTCCATGCGAAAGCCCCGCGGCTTTGAGGTTCTTCATGAGCTCGAATGTAACTGTGAAA 678 Query 643 GGCCTAAGTATAAAAAACAGCCCTCAGGTTCACCTCAAATTAGATGGATGTCACGTAGTT 702 ||||| |||||||| |||||||||||||||||||||||| | || |||||||| || ||| Sbjct 679 GGCCTGAGTATAAAGAACAGCCCTCAGGTTCACCTCAAACTCGACGGATGTCATGTTGTT 738 Query 703 CACATCAACTCCCTTCGAATCATATCTCCGCCGGCTAGTCCCAACACCGACGGTATCCAC 762 |||||||||||| || |||||||||||||| || | ||||||||||| || ||||||||| Sbjct 739 CACATCAACTCCATTAGAATCATATCTCCGTCGTCAAGTCCCAACACTGATGGTATCCAC 798 Query 763 ATTGAGAACTCCAACTCCGTTGAGATTTACAACTCCGTTATCTCCAACGGAGATGATTGT 822 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 ATTGAGAACTCCAAATCCGTTGAGATTTACAACTCCGTTATCTCCAACGGAGATGATTGT 858 Query 823 GTCTCCATAGGACCCGGAGCATACGATATCGATATACGAAATATCACTTGTGGACCAGGA 882 ||||| |||||||| ||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 859 GTCTCGATAGGACCTGGATCATACGATATCGATATACGAAATCTCACTTGTGGACCAGGC 918 Query 883 GGGCATGGAATTAGCATTGGAAGTTTGGGAGaaaaaaaCTCACATGCGTGTGTCTCCAAC 942 |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 919 GGGCATGGAATTAGCATTGGAAGTTTGGGAGAAAAATCCTCACATGCGTGCGTCTCCAAC 978 Query 943 GTTACGGTTAGAGACTCGTTCATAAAATTTTCCGAAAATGGAGTACGAATCAAGACATGG 1002 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 979 GTTACGGTTAGAGACTCGTTTATAAAATTTTCCGAAAATGGAGTACGGATCAAGACATGG 1038 Query 1003 CAAGGTGGATCAGGGTCCGTTTCGGGTGTAACGTTTGACAATATCCATGTAGATACTGTC 1062 ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 1039 CAAGGTGGATCCGGGTCCGTTTCGGGTGTAACATTTAACAATATCCATGTAGATACTGTC 1098 Query 1063 CGGAATCCGATAATCATCGATCAATACTATTGCACGACTAAAAGTTGTGCTAACAAAACA 1122 || ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 1099 CGAAATCCGATAATCATCGATCAATACTATTGTACGGCTAAAAGTTGTGCTAACAAAACA 1158 Query 1123 TCAGCGGTTTTTGTGAATGATATAGTATATCAAAGTATAAAAGGCACATACGATATTCGT 1182 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1159 TCGGCGGTTTTTGTGAATGATATAGTATATCAAAGTATAAAAGGCACATACGATATCCGT 1218 Query 1183 AGTCCCCCAATGCATTTTGGATGCAGCAACAATGTCCCGTGCACAAACTTAACACTTTC- 1241 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1219 AGCCCCCCTATGCATTTTGGATGCAGCAACAATGTCCCGTGCACAAACTTAACACTCTCA 1278 Query 1242 GAATATCGAATTGTTACCTTCAAAAGAAGATATTGTTGTGGGTCCGTTCTGTTGGAATGC 1301 || |||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| Sbjct 1279 GA-TATCGAATTGTTACCTTCAAAAAAAGATATTGTTGTGGATCCCTTCTGTTGGAATGC 1337 Query 1302 GTATGGGATCACGGATGAGTTCTCTGTACCTTTGATCTCGTGTCTCAAATCGAATCCTTC 1361 ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1338 GTATGGGATTACGGATGAGTTCTCCGTACCTTTGATCTCGTGTCTTAAATCGAATCCTTC 1397 Query 1362 GACATCGTTGTTAAGTGGTCTTTCAGGGAGGTGTGGATCACCGTGA 1407 ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1398 GACGTCGTTGTTAAGTGGTCTTTCAGGGAGGTGTGGATCACCGTGA 1443 Score = 128 bits (69), Expect = 1e-28 Identities = 93/104 (89%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 1 ATGTTGAAACTTTCTCGTGATCCGATTCTATGTATCACTACATTAATTCTCATTATAACA 60 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1 ATGTTGAAACTGTCTCGTGATCCGATTCTATGTATCACTACATTAATTCTCATCA---CA 57 Query 61 TTTTCTCTCTTATCCTATGGAACTGAAGCAAGGCTACATCATCA 104 |||||| | || | ||||| |||||||||||| ||||||||||| Sbjct 58 TTTTCTTTATTCTTCTATGAAACTGAAGCAAGACTACATCATCA 101 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52602628345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5