BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G01895.1

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490386 jgi|Araly1|490386|fgenesh2_kg.6__3520__AT4G01895.1         595    7e-170


> Ahg490386 jgi|Araly1|490386|fgenesh2_kg.6__3520__AT4G01895.1
Length=426

 Score =  595 bits (322),  Expect = 7e-170
 Identities = 393/427 (92%), Gaps = 5/427 (1%)
 Strand=Plus/Plus

Query  1    ATgaaccaagaagaagaaaaaacagagaacaaaaggatcaacgagatcgatgaagacgaa  60
            |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct  1    ATGAACCAAGAAGAAGAAAATACAGAGAAGAAGAGGATCAACGAGATCGATGAAGACGAA  60

Query  61   gaagaagaGTTGGAGAACAAGAAGATGGACATGTTCTTCAATCTCATTAAAAACTACCAG  120
            ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||
Sbjct  61   GAAGAAGAGTTGGAGAACAAGAAAATGGAGATGTTCTTCAATCTCATCAAAAACTATCAG  120

Query  121  GATGCTAAGAAACGAAGACGACAATACTTAACTCAAGATTCTGGCGACGTTGCTT-CGAT  179
            |||||||||||||||||||||||| |||||||||||||||| ||||||  ||||| || |
Sbjct  121  GATGCTAAGAAACGAAGACGACAAGACTTAACTCAAGATTCCGGCGACACTGCTTCCG-T  179

Query  180  GCCGACCAAGAGATCCGACTACAGCATTGTTCCTGTATTCCGTGCTGAAGATTTTTCTCA  239
             || | |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  180  TCCAAACAAGAGATCCGACTACGGCATTGTTCCTGTATTCCGTGCTGAAGATTTTTCTCA  239

Query  240  CTGTATGGACTTAAACCTAAAGCCATCGAATTCGATTATCTCCACCaagaaccaagaaga  299
            |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||
Sbjct  240  CTGTATGGACTTAAACTTAAAGCCGTCGAATTCGATTATCCCCACCAAGAACCAACAAGA  299

Query  300  agagaagcaagaagaagaagaagaagaagatgatgaagaagaag---aagatgatgatga  356
            |||||||||||||||||||||||||||||||||||| || ||||   |||| ||||||||
Sbjct  300  AGAGAAGCAAGAAGAAGAAGAAGAAGAAGATGATGATGATGAAGGGGAAGAAGATGATGA  359

Query  357  aggagaagaagaagttgagaaggtgatgagaaaagatAATGGTTTAGATCTTAATCTTGC  416
             | |||||||||||| |||||||| |  | ||||||||||||||||||||||||||||||
Sbjct  360  TGAAGAAGAAGAAGTAGAGAAGGTCACAATAAAAGATAATGGTTTAGATCTTAATCTTGC  419

Query  417  ATTGTAA  423
            |||||||
Sbjct  420  ATTGTAA  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15224080011


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5