BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G01897.1

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg895824 jgi|Araly1|895824|Al_scaffold_0006_3820                    604    2e-172
  Ahg490386 jgi|Araly1|490386|fgenesh2_kg.6__3520__AT4G01895.1        69.4    3e-11 


> Ahg895824 jgi|Araly1|895824|Al_scaffold_0006_3820
Length=369

 Score =  604 bits (327),  Expect = 2e-172
 Identities = 355/369 (96%), Gaps = 0/369 (0%)
 Strand=Plus/Plus

Query  40   ATGGCTGAGGAAGAGTTCATATACAGAATCAGTACGGAACAAGAATGGGAAGAGTTTAAG  99
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1    ATGGCTGAGGAAGAGTTCATATACAGAATCAGTACGGAACAAGAATGGGAAGAGTTTCAG  60

Query  100  AAGAATGGATCTTCTTATGGTGCAGAGATTGATAAATCAACTTGTTATTATCATCTCAGC  159
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AAGAATGGATCTTCTTTTGGTGCAGAGATTGATAAATCAACTTGTTATTATCATCTCAGC  120

Query  160  AAACTTGATCAGGTACAATTGACATTGAAGAACTTTTTCGTGGATGTGAAGGAGTATCTT  219
            ||||| |||||||||||||||||| |||||||||||||| || |||| |||||| |||||
Sbjct  121  AAACTCGATCAGGTACAATTGACACTGAAGAACTTTTTCTTGAATGTTAAGGAGGATCTT  180

Query  220  TACCTTCTTCAAGTCGATCCTAAGAAGCTTGGAGATGGATTAATCTATGAAGCTGTGGAT  279
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  181  TACCTTCTTCAAGTCGATCCTAAGAAGCTTGGAGATGGATTGATCTATGAAGCTGTGGAT  240

Query  280  GAAGTAAATAGCTTCCCTCACTTCTATGGTCCAGACAAAACCTTCGTTCCTCTTCCTCTA  339
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  241  GAAGTGAATAGCTTCCCTCACTTCTATGGTCCAGACAAAACCTTTGTTCCTCTTCCTCTA  300

Query  340  GATTCTGTCGTCAAAGCTGAGAAGCTAACATTCATCAATGGAAATTTCACATGCAGCTTC  399
            |||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct  301  GATTCTGTCGTCAAAGCTGAGAAGTTAACATTCATCAATGGCAATTTCACCTGCAGCTTC  360

Query  400  TTGACTTGA  408
            |||||||||
Sbjct  361  TTGACTTGA  369


> Ahg490386 jgi|Araly1|490386|fgenesh2_kg.6__3520__AT4G01895.1
Length=426

 Score = 69.4 bits (37),  Expect = 3e-11
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand=Plus/Minus

Query  516  TTACAATGCAAGATTAAGATCTAAACCATTATCTTTT  552
            |||||||||||||||||||||||||||||||||||||
Sbjct  426  TTACAATGCAAGATTAAGATCTAAACCATTATCTTTT  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20413240115


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5