BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01900.1
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490384 jgi|Araly1|490384|fgenesh2_kg.6__3518__AT4G01900.1 1120 0.0
> Ahg490384 jgi|Araly1|490384|fgenesh2_kg.6__3518__AT4G01900.1
Length=812
Score = 1120 bits (606), Expect = 0.0
Identities = 734/793 (93%), Gaps = 20/793 (3%)
Strand=Plus/Plus
Query 48 AATCATGGCGGCGTCAATGACGAAACCCATCTCAATAACTTCTCTCGGTTTCTATTCTGA 107
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 27 AATCATGGCGGCGTCAATGACGAAACCCATCTCAATAACTTCTCTAGGTTTCTATTCTGA 86
Query 108 TCGAAAGAACATTGCTTTCTCTGATTGCATTTCGATTTGTTCTGGATTCAGACATTCCCG 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 87 TCGAAAGAACATTGCTTTCTCTGATTGCATTTCGATTTGTTCTGGATTCAGACATTCTAG 146
Query 168 ACCATCTTGCCTCGATTTGGTCAC-AAAGTCACCGAGTAATAACAGTCGTGTTTTACCTG 226
|||||| ||||||||||||||||| ||| ||||||||| | |||| ||||||||||||||
Sbjct 147 ACCATCATGCCTCGATTTGGTCACGAAA-TCACCGAGTCACAACACTCGTGTTTTACCTG 205
Query 227 TCGTTAGTGCCCAAATATCTTCTGATTATATTCCAGACTCGAAATTTTACAAGGTGGAAG 286
||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 206 TCGTTAGAGCCCAAAGCTCTTCTGATTATATTCCAGACTCAAAATTTTACAAGGTGGAAG 265
Query 287 CAATTGTCAGACCATGGAGAATCCAGCAAGTTTCATCGGCTTTACTGAAAATCGGGATTC 346
|||||||||| |||||||| ||||| ||||||||||||| || |||||||||||||||
Sbjct 266 CAATTGTCAGGCCATGGAGTCTCCAGAAAGTTTCATCGGCGTTGTTGAAAATCGGGATTC 325
Query 347 GAGGTGTTACTGTTTCTGATGTGAGAGGGTTTGGTGCACAAGGAGGTTCTACCGAGAGAC 406
|||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct 326 GAGGTGTTACTGTTTCTGATGTTCGAGGGTTTGGTGCACAAGGTGGTTCCACCGAGAGAC 385
Query 407 ACGGTGGCTCTGAGTTCTCGGAAGACAAATTTGTTGCTAAAGTTAAGATGGAAATCGTTG 466
| |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 386 ATGGTGGCTCTGAGTTCTCGGAAGACAAGTTTATTGCTAAAGTTAAAATGGAAATCGTTG 445
Query 467 TTAAGAAAGACCAAGTGGAATCTGTAATCAACACAATAATTGAAGGAGCAAGGACAGGAG 526
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 446 TTAAGAAAGACCAAGTGGAATCTGTAATCAACACCATAATTGATGGAGCAAGGACAGGAG 505
Query 527 AGATTGGTGATGGCAAGATTTTTGTTTTGCCTGTGTCAGATGTCATAAGAGTTAGGACAG 586
|||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||
Sbjct 506 AGATTGGTGATGGCAAGATTTTCGTTATACCTGTGTCAGATGTCATAAGAGTTCGGACAG 565
Query 587 GTGAGCGTGGGGAGAAAGCAGAGAAGATGACTGGTGATATGCTTTCACCGTCTTAGGAAC 646
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 566 GTGAGCGTGGGGAGAAAGCAGAGAAGATGACTGGTGATATACTTTCACCGTCTTAGGAAC 625
Query 647 AAACAGAGCTCAAGAATGGtttttttttttttCATTTCGGTCTCTAGAT-T-----CTGC 700
|||||||||||||||| ||| ||| | ||||||||||||||||| | ||||
Sbjct 626 AAACAGAGCTCAAGAACGGTGTTTAT------CATTTCGGTCTCTAGATCTAATTTCTGC 679
Query 701 GAATAATAATGAATGGAGTCTGTGTTTGGTTTCA-TGTTGAATCGATCAAGATGTGTTTT 759
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 680 GAACAATAATGAATGGAGTCTGTGTTTGGTTTCTCTGTTGAATCGATCAAGATGTGTTTT 739
Query 760 TAACTGTACATGAATTATG-----CAGAAACATCTGTCCTGGTTCTCAGACATCGAAACT 814
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 740 TAACTGTAAATGAATTATGTTATGCAGAAACATCTGTCCTGGTTCTCAGACATCGAAACT 799
Query 815 CTGTTCCTAATAA 827
|||||||||||||
Sbjct 800 CTGTTCCTAATAA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32251987782
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5