BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G01930.1

Length=1959
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943182 jgi|Araly1|943182|scaffold_603726.1                        196    4e-49


> Ahg943182 jgi|Araly1|943182|scaffold_603726.1
Length=253

 Score =  196 bits (106),  Expect = 4e-49
 Identities = 158/183 (86%), Gaps = 3/183 (2%)
 Strand=Plus/Plus

Query  31   ATCCACAAGCATCATATGTTGCCTTGGAATGATATGAGGAAAGGTGATTGTTGTAGACGT  90
            ||||||  ||||| |||| ||||||||| |||| | |||| ||||||||||||| |||| 
Sbjct  3    ATCCACGCGCATCTTATGATGCCTTGGACTGATCTAAGGAGAGGTGATTGTTGTGGACGC  62

Query  91   TTTGAAGCTATCAGTGATGGCTACTATTGCAAAACCTGCGATTTTTTCGTCCACAAGAGC  150
            || |||| |||||||||||| ||||||||||||||||||||||||||||| |||||||  
Sbjct  63   TTGGAAGTTATCAGTGATGGTTACTATTGCAAAACCTGCGATTTTTTCGTTCACAAGAAA  122

Query  151  TGTGGCGATAGGTCCTCCGAATATATCGAGCATCCATCTCACCCAAGTCACGCTCTTCAG  210
            ||||| ||  | ||||| |||||||||||||||||||||||| | |||||  ||||||||
Sbjct  123  TGTGGTGA--G-TCCTCTGAATATATCGAGCATCCATCTCACTCTAGTCATACTCTTCAG  179

Query  211  CTT  213
            |||
Sbjct  180  CTT  182



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 73628443585


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5