BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01935.1
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490383 jgi|Araly1|490383|fgenesh2_kg.6__3517__AT4G01935.1 1424 0.0
> Ahg490383 jgi|Araly1|490383|fgenesh2_kg.6__3517__AT4G01935.1
Length=933
Score = 1424 bits (771), Expect = 0.0
Identities = 882/936 (94%), Gaps = 6/936 (1%)
Strand=Plus/Plus
Query 20 tttttttGTATGGATAAAATTGGAAAATGTTTGTCTTAGCGATATCTTCTCCTTCAACGA 79
||||||||||||||| | ||||||| |||||||||||| |||||||||||||||||||
Sbjct 1 TTTTTTTGTATGGATGAGATTGGAAGATGTTTGTCTTAACGATATCTTCTCCTTCAACTC 60
Query 80 CTCTCATCAAACCATTAAAACGAAATGGGCCAAACCGGTCACCGGTTCGAAAAATCCTTT 139
||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 61 CTCTCATCAGACCACTAAAACGAAACGGGCCAAACCGGTCACCGGTTCGAAAAATCCTCT 120
Query 140 GCCTGAGCCAGAGGAAGCAGAGCAAAACCAGTACCGGCAAATCTTGGATCGTCCCAGTAA 199
|| |||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct 121 GCATGAGCCAGAGGAGGCAGAGCAAAACCGGTACCGGAAAATCTTGGATAGTCCCAGTAA 180
Query 200 GTCTCTCTCTTTTTGGTTCAGGCTTCGTCTTGGGTCCTCTTCTCGATGGTATCCACTCAC 259
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GTCTCTCTCTTTTTGGTTCAGGCTTCGTCTTGGGTCCTCTTCTCGATGGTCTCCACTCAC 240
Query 260 GTGTCGATCTCGTGGTTTACCAAAACGGAGCTTTTCAAATCGGTCCCCTTCATACAAACA 319
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTGTTGATCTCGTGGTTTACCAAAACGGAGCTTTTCAAATCGGTCCCCTTCATACAAACA 300
Query 320 TCTGGGTACCGTTCTTGCTTGGCTTATTTTACTGTACAGTAGGTTTACTACAACTCCTAT 379
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 TCTGGGTCCCGTTCTTGCTTGGCTTATTTTATTGTACAGTAGGTTTACTACAACTCCTAT 360
Query 380 TGGATGAGACAACCTCT-GCAAGTCCTCCACGTGGTAGCCTGGACAAAACCGTAATTTCA 438
||||||||||||||||| ||| ||||||||||| ||| ||||||||||| ||||||||
Sbjct 361 TGGATGAGACAACCTCTATAAAG-CCTCCACGTGGCAGCTTGGACAAAACCATAATTTCA 419
Query 439 CTCTTAGCATTGATGTTCTTCTTAGAGCTAAGTGCTGAAATGTACAAAGCTGGAGTTTCA 498
||||||||| || || | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 CTCTTAGCACTGCTGGTGTTCTTAGAGTTAAGTGCTGAAATGTACAAAGCTGGAGTTTCA 479
Query 499 GACAACATAGAAGCTTACATTCTATTTGCCTTAGCAGAATTTATTTGGTTCTCTTTGGAT 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GACAACATAGAAGCTTACATTCTATTTGCCTTAGCAGAATTTATTTGGTTCTCTTTGGAT 539
Query 559 AGAACTTGGATTTGCTTCACCATTGCCACTCTCCTTGGTGTCGCCTGTCCTTTAGCCGAA 618
||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 540 AGAACTTGGCTTGGCTTCACCATTGCCACTCTCCTCGGTGTTGCCTGTCCTTTAGCCGAA 599
Query 619 ATCCCCATCATGCAATTCTTCCATCTGTGGTACTATCCAGAAGCAAACATAGAAATCTTT 678
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 600 ATCCCCATCATGCAATTCTTCCATCTGTGGTACTATCCAGAAGCTAACATAGAGATCTTT 659
Query 679 GGCCAGGGACTGGTTACGTGGACAACAACTTGCTACTTTGTCTACACACCGTTCTTGATC 738
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGCCAGGGATTGGTTACTTGGACAACAACTTGCTACTTTGTCTACACACCGTTCTTGATC 719
Query 739 AACCTGGCAAGATGGCTAAGGACAGTTATGGAGAGGACGACTATTGAAGTGGACATTAGC 798
||||| ||||||||||| ||||||||||||||||||||||||| ||| || |||||||||
Sbjct 720 AACCTAGCAAGATGGCTCAGGACAGTTATGGAGAGGACGACTACTGATGTAGACATTAGC 779
Query 799 TCAAACAAAGAGCAATAATGTTTTTACATAATATAGTG-GCTTTCTTCATGCTTTCTAGC 857
|||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 780 TCAAGCGAAGAGCAATAATGTTTTTACATAATATAGTGAG-TTTCTTCATGCTTTCTAGC 838
Query 858 TTGTAAAGGTTACATTAGATATGTCCTTAAACTTTTCTTTAATCGCTGC-CTGTATTCCC 916
|||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||
Sbjct 839 TTGTAAAGGTTACATTAGATATGTCCTTGAACTTTTCTTTAATAGCTGCTC-GTATTCCC 897
Query 917 ATTCCAATCGACTCCGGTCCAACATATTTTACAACG 952
||||||||||| || |||||||||||||||||||||
Sbjct 898 ATTCCAATCGATTCTGGTCCAACATATTTTACAACG 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35339944059
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5