BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01950.1
Length=1828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943550 jgi|Araly1|943550|scaffold_604094.1 2573 0.0
> Ahg943550 jgi|Araly1|943550|scaffold_604094.1
Length=1605
Score = 2573 bits (1393), Expect = 0.0
Identities = 1541/1612 (96%), Gaps = 12/1612 (1%)
Strand=Plus/Plus
Query 57 agCTTTCTGCAAAATCCAAACATGTCCGCCAAGATTTCAATATTCCAAGCTCTTGTCTTT 116
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 AGCTTTCTGCAAAA-CCAAAAATGTCCGCTAAGATTTCAATATTCCAAGCTCTTGTCTTT 59
Query 117 CTATTCTACCGGTTTATCCTCCGGCGATATCGGAACTCTAAACCAAAATACCAAAATGGC 176
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 60 CTATTCTACCGGTTTATCCTCCGGCGATATCGGAACCCTAAACCAAAATACCAAAATGGC 119
Query 177 CCTTCTTCTCTCCTCCAATCCGACCTATCACGCCACACATTGATCTTCAACGTAGAAGGA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCTTCTTCTCTCCTCCAATCCGACCTATCACGCCACACATTGATCTTCAACGTAGAAGGA 179
Query 237 GCTCTTCTCAAATCCGACTCTCTCTTCCCTTACTTCATGTTAGTAGCATTTGAGGCGGGA 296
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 GCTCTTCTCAAATCCGACTCTCTCTTCCCTTACTTCATGTTAGTAGCATTCGAGGCGGGC 239
Query 297 GGCGTAATAAGGTCATTTCTCCTCTTCATTCTCTATCCATTGATAAGCTTGATGAGCCAT 356
|| || | |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGGGTGACAAGGTCATTTATCCTCTTCATTCTCTATCCATTGATAAGCTTGATGAGCCAT 299
Query 357 GAGATGGGTGTCAAAGTGATGGTAATGGTGAGCTTCTTCGGGATCAAAAAAGAAGGTTTT 416
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 300 GAGATGGGTGTCAAAGTGATGGTAATGGTGAGCTTCTTCGGGGTCAAAAAAGAAAGTTTT 359
Query 417 CGAGCGGGGAGAGCGGTTTTGCCTAAATACTTTCTAGAAGATGTCGGACTCGAGATGTTC 476
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 360 AGAGCGGGGAGAGCGGTTTTACCTAAATACTTTCTAGAAGATGTCGGGCTCGAGATGTTC 419
Query 477 GAAGTGTTGAAGAGAGGAGGGAAGAAAATCGGAGTGAGTGATGATCTTCCTCAAGTTATG 536
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 420 CAAGTGTTGAAGAGAGGAGGGAAGAGAATTGGAGTGAGTGATGATCTTCCTCAAGTTATG 479
Query 537 ATCGAAGGGTTCTTGAGAGATTACTTGGAGATTGACGTTGTGGTCGGGAGAGAAATGAAA 596
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 480 ATCGAAGGGTTCTTGAAAGATTACTTGGAGATTGACGTTGTGGTCGGGAGAAAAATGAAG 539
Query 597 GTCGTTGGAGGTTATTATCTAGGTATCATGGA-GGATAAAACCAAACATGATCTTGTCTT 655
|||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||
Sbjct 540 GTCGTTGGAGGTTATTATTTAGGGATCATGGAAGG-TAAAACCAAACATGATCTTGTCTT 598
Query 656 TGATGAGTTAGTTCGTAAAGAGAGACTAAACACCGGTCGTGTTATTGGCATCACTTCCTT 715
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGATGAGTTGGTTCGTAAAGAGAGACTAAACACCGGTCGTGTTATTGGCATCACTTCCTT 658
Query 716 CAATACATCTCTTCACCGATATCTATTCTCTCAGTTTTGCCAGGAAATTTATTTCGTGAA 775
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAATACATCTCTTCATCGATATCTATTCTCTCAGTTTTGCCAGGAAATTTATTTCGTGAA 718
Query 776 GAAATCAGACAAGCGAAGCTGGCAAACCCTACCACGAAGCCAGTACCCTAAACCATTGAT 835
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 719 GAAATCAGACAAGCGAAGCTGGCAAACCCTACCACGAAGCCAATACCCTAAACCATTGAT 778
Query 836 TTTCCATGATGGCCGTCTCGCGATCAAACCAACCCTAATGAACACTTTGGTCTTGTTCAT 895
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTCCACGATGGCCGTCTCGCAATCAAACCAACCCTAATGAACACTTTGGTCTTGTTCAT 838
Query 896 GTGGGGTCCTTTCGCAGCCGCAGCCGCAGCAGCCAGACTCTTCGTCTCTCTTTGCATCCC 955
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GTGGGGTCCTTTCGCAGCAGCAGCCGCAGCAGCCAGACTCTTCGTCTCTCTTTGCATCCC 898
Query 956 TTACTCTTTATCAATCCCGATCCTCGCCTTTTCCGGTTGCAGACTAACCGTCACTAACGA 1015
|||||| || ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 899 TTACTCCTTCTCAATCCCGATCCTCTCCTTTTCCGGATGCAGACTAACCGTCACTAACGA 958
Query 1016 CTACGTTTCATCTCAAAAACAAAAACCAAGTCAACGCAAAGGTTGTCTCTTTGTTTGTAA 1075
|||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||
Sbjct 959 CTACGTTTCATCTCAAAAACCAAAATCAAGTCAACGCAAAGGTTGTCTCTTTGTGTGTAA 1018
Query 1076 CCATAGGACTTTATTGGACCCTCTCTATGTTGCATTCGCTTTGAGAAAGAAAAACATCAA 1135
|||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct 1019 CCATAGGACTTTGTTGGACCCTCTCTATGTTGCATTCGCCTTGAAAAAGAAAAACATAAA 1078
Query 1136 AACTGTAACGTATAGTTTGAGTAGGGTATCTGAGATTTTGGCTCCGATCAAGACGGTGAG 1195
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1079 AACTGTAACGTATAGTTTGAGTAGGGTATCCGAGATTCTGGCTCCGATCAAGACGGTGAG 1138
Query 1196 ACTGACCCGTGATCGGGTGAGCGACGGTCAAGCCATGGAGAAATTGTTAACCGAAGGAGA 1255
||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1139 ACTTACCCGTGATCGGGTGAGTGACGGTCAAGCCATGGAGAAATTGTTGACCGAAGGAGA 1198
Query 1256 TCTCGTTGTTTGTCCTGAAGGAACCACTTGTAGAGAACCTTACCTGCTTAGGTTTAGCCC 1315
|||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1199 TCTCGTGGTTTGTCCTGAAGGAACCACCTGTAGAGAACCTTACATGCTTAGGTTTAGCCC 1258
Query 1316 TTTGTTCACCGAGGTTAGTGATGTCATCGTTCCCGTGGCTGTGACGGT-ACACGTGACCT 1374
||||||||||||||||||||| ||||||||||| ||||| |||||| | | |||||||||
Sbjct 1259 TTTGTTCACCGAGGTTAGTGACGTCATCGTTCCGGTGGCCGTGACG-TCAAACGTGACCT 1317
Query 1375 TCTTCTACGGTACAACGGCGAGTGGTCTTAAGGCACTT-GACCCGCTTTTCTTCCTCTTG 1433
||||||| ||||||||||| |||||||||||||| ||| |||||||| ||||||||| ||
Sbjct 1318 TCTTCTATGGTACAACGGCAAGTGGTCTTAAGGC-CTTTGACCCGCTCTTCTTCCTCATG 1376
Query 1434 GATCCTTATCCTACCTACACCATCCAATTTCTCGACCCTGTCTCCGGTGCCACGTGCCAA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GATCCTTATCCTACCTACACCATCCAATTTCTCGACCCTGTCTCCGGTGCCACGTGCCAA 1436
Query 1494 GATCCTGATGGAAAGTTGAAGTTTGAGGTGGCCAA-CAATGTTCAGAGTGATATTGGGAA 1552
||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 1437 GATCCTGATGGGAAGTTGAAGTTTGAGGTGGCCAATCA-TGTTCAGAGTGAGATTGGGAA 1495
Query 1553 GGCGTTGGATTTCGAGTGCACAAGTCTCACTAGAAAAGACAAGTATTTGATCTTGGCCGG 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GGCGTTGGATTTCGAGTGCACAAGTCTCACTAGAAAAGACAAGTATTTGATCTTGGCCGG 1555
Query 1613 TAATAATGGAGTAGTTAAGAAAAATTAAAATTTGTTTT-AGGATGATGAGTG 1663
|||||||||||||||||||||||||||||||| ||||| ||| | ||||||
Sbjct 1556 TAATAATGGAGTAGTTAAGAAAAATTAAAATT-GTTTTTAGGTTT-TGAGTG 1605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68638621490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5