BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01960.1 Length=1191 Score E Sequences producing significant alignments: (Bits) Value Ahg490381 jgi|Araly1|490381|fgenesh2_kg.6__3515__AT4G01960.1 1821 0.0 > Ahg490381 jgi|Araly1|490381|fgenesh2_kg.6__3515__AT4G01960.1 Length=1170 Score = 1821 bits (986), Expect = 0.0 Identities = 1125/1189 (95%), Gaps = 21/1189 (2%) Strand=Plus/Plus Query 1 AATCGGGACACGAACaaaagagaaaaga-aaaatcaaaaTTTTTGACCTTTATGAACCCT 59 ||||||||||||||||||| |||||| | |||||||||| |||||||||||||||||||| Sbjct 1 AATCGGGACACGAACAAAAAAGAAAAAAGAAAATCAAAAGTTTTGACCTTTATGAACCCT 60 Query 60 AATTTTGGGTTGGTCActctctctctctctctTTCCTTTCCCAAAATTGGATTCAAAGTT 119 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 61 AATTTTGGGTTGGTCA------CTCTCTCTCTTTCCTTTCCCAAAATTGGATTCAAAGTT 114 Query 120 CTTTCTTTTTGTCTTCCTCGTACATCACAGCATCAAGGGTTTTCGACATTACCAGCTATT 179 ||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 115 CTTCCTTTTTGCCTTCCTCGTACCTCACAGCATCAAGGGTTTTCGACATTCCCAGCTATT 174 Query 180 ATGCTTGAATTCGAGGACGCAAGGAGTTAAA-AGAGCAAGTCTTTTGAGTTGAGGAAGCT 238 ||||||||||| ||||||||||||||||||| ||||||||||||||||| || ||||| | Sbjct 175 ATGCTTGAATTTGAGGACGCAAGGAGTTAAATAGAGCAAGTCTTTTGAGCTGTGGAAGTT 234 Query 239 TCTGTAGAGGATTATTATTTCAGGGGAAATTTAAGGGTTTGATCAGCTTTTGTGTGTTGT 298 ||| |||||| |||||||||||||||||||||||||||||||||||| || | |||| Sbjct 235 TCTATAGAGG---ATTATTTCAGGGGAAATTTAAGGGTTTGATCAGCTTCTGCAT-TTGT 290 Query 299 GCGGGATGGATCAAATTGTTTCAGGAGAAGAAGAAGATCTTGATGTAGATATTGAAGATG 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 291 GCGGGATGGATCAAATTGTTTCAGGAGAAGAAGAAGATCTTGATGTAGATATTGAAGATG 350 Query 359 GTAGATTCAATGAGACACAAGAGATAACGACGAATCTTGTTTCAGCGGAAGGGGATTCAG 418 |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| Sbjct 351 GTAGATTCAATGAGACACAAGACATAACGGCGAATCTTGTTTCAGCAGAAGGGGATTCAG 410 Query 419 AGAATGTTTTGAATCATGTTTGGAGTGGACGTTTGAGTTTTGATGGGTCTGAAAAGAGTG 478 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 AGAATGGTTTGAATCATGTTTGGAGTGGACGTTTGAGTTTTGATGGGTCTGAAAAGAGTG 470 Query 479 CTGATGATCTAGTAGACCCTTTAATGGGAGAGGGAAAGCGGAGAGAAAGAAGCAGTCAAA 538 |||||||||| | | |||||||||| | ||||||||||||||| ||||| |||| Sbjct 471 CTGATGATCT-G--G------TAATGGGAGACGAAAAGCGGAGAGAAAGGAGCAGCCAAA 521 Query 539 GTTTGGATCTTTCGGATATGAAGTTTGATAATGATAAGTTTAAGAAGACGAGAAAACCTT 598 ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| Sbjct 522 GTTTGGATCTTTCGGATATGAAGTTTGATAATGTTAAGTTTAAGAAGACAAGAAAGCCTT 581 Query 599 CAAAGCCACCGAGGCCTCCAAAAGGTCCGTTACTGAGTGCTAATGACCAGAAGTTGATGA 658 ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 582 CAAAGCCGCCGAGGCCTCCAAAAGGTCCATTACTGAGTGCAAATGACCAGAAGTTGATGA 641 Query 659 GGGAAATCACGGAGCTTGCTATGAGAAAGCGTGCTCGGATTGAACGGATGAAAACACTCA 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 642 GGGAAATCACGGAGCTTGCTATGAGAAAGCGTGCTCGGATTGAACGGATGAAAACACTGA 701 Query 719 GAAGATTGAAAGCAGCAAAGTCCTCGTCTCCCTGCAGTAGCATTTTCGCCATGATAGTGA 778 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 702 GAAGATTGAAAGCAGCAAAGTCCTCGTCTCCCTGCAGTAGTATTTTCGCCATGATAGTGA 761 Query 779 CGGTTATATTCTTCGTCTTCTTAATCTTTCAAGGGTTCTTCACAAGCAATGCGAGTTTGA 838 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 762 CGGTTATATTCTTCGTCTTCTTAATCTTTCAAGGGTTCTTCACAAGCAATGCAAGTTTGA 821 Query 839 ATTCTGACAATTCACCTGCACCAAATAATTCAGCTAATAACCGTATGGTCTCTGTTCAGT 898 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 822 ATTCAGACAATTCACCTGCACCAAATAATTCAGCCAATAACCGTATGGTCTCTGTTCAAT 881 Query 899 TCTACAATGAGTTTGCTCCTCGTGAGAGAATCGATCCCAGCCCTACTACTTCTTTCAGGT 958 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 882 TCTACAGTGAGTTTGCTCCTCGTGAGAGAATCGATCCCAGCCCAACTACTTCTTTCAGGT 941 Query 959 ATAAGAGAGTCTCAGGTGCAGACAATGAAGAAAACACAAGAGAAGTTACCAGATGAGTTT 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 942 ATAAGAGAGTCTCAGGTGCAGACAATGAAGAAAACACAAGAGAAGTTACCAGATGAGTTT 1001 Query 1019 CTTCTCTTTGGATTCTTGTAAAATGTAACCAAAAACACTACTTATGTTTTTGTTTGTTCG 1078 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1002 CTTCTCTTCGGATTCTTGTAAAATATAACCAAAAACACTACTTATGTTTTTGTTTGTTCG 1061 Query 1079 TAAATTCTTGACATCACTCTATTGTTCCTTTGATCTGTTTGTGTTCACATGTTTGTCTCT 1138 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 1062 TAAATTCTTGACATCACTCTATTGTTCCTTTGCTCTGTTTGTGTTCACATGTTTCTCTCT 1121 Query 1139 CTGTTACTCTTCTTGTAAATATTCTTATGGATGAATCTGCTCAtttttt 1187 |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1122 GTGTTACTCTTCTTGTATATATTCTTATGGATGAATCTGCTCATTTTTT 1170 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44451321222 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5