BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01960.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490381 jgi|Araly1|490381|fgenesh2_kg.6__3515__AT4G01960.1 1821 0.0
> Ahg490381 jgi|Araly1|490381|fgenesh2_kg.6__3515__AT4G01960.1
Length=1170
Score = 1821 bits (986), Expect = 0.0
Identities = 1125/1189 (95%), Gaps = 21/1189 (2%)
Strand=Plus/Plus
Query 1 AATCGGGACACGAACaaaagagaaaaga-aaaatcaaaaTTTTTGACCTTTATGAACCCT 59
||||||||||||||||||| |||||| | |||||||||| ||||||||||||||||||||
Sbjct 1 AATCGGGACACGAACAAAAAAGAAAAAAGAAAATCAAAAGTTTTGACCTTTATGAACCCT 60
Query 60 AATTTTGGGTTGGTCActctctctctctctctTTCCTTTCCCAAAATTGGATTCAAAGTT 119
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATTTTGGGTTGGTCA------CTCTCTCTCTTTCCTTTCCCAAAATTGGATTCAAAGTT 114
Query 120 CTTTCTTTTTGTCTTCCTCGTACATCACAGCATCAAGGGTTTTCGACATTACCAGCTATT 179
||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 115 CTTCCTTTTTGCCTTCCTCGTACCTCACAGCATCAAGGGTTTTCGACATTCCCAGCTATT 174
Query 180 ATGCTTGAATTCGAGGACGCAAGGAGTTAAA-AGAGCAAGTCTTTTGAGTTGAGGAAGCT 238
||||||||||| ||||||||||||||||||| ||||||||||||||||| || ||||| |
Sbjct 175 ATGCTTGAATTTGAGGACGCAAGGAGTTAAATAGAGCAAGTCTTTTGAGCTGTGGAAGTT 234
Query 239 TCTGTAGAGGATTATTATTTCAGGGGAAATTTAAGGGTTTGATCAGCTTTTGTGTGTTGT 298
||| |||||| |||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 235 TCTATAGAGG---ATTATTTCAGGGGAAATTTAAGGGTTTGATCAGCTTCTGCAT-TTGT 290
Query 299 GCGGGATGGATCAAATTGTTTCAGGAGAAGAAGAAGATCTTGATGTAGATATTGAAGATG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GCGGGATGGATCAAATTGTTTCAGGAGAAGAAGAAGATCTTGATGTAGATATTGAAGATG 350
Query 359 GTAGATTCAATGAGACACAAGAGATAACGACGAATCTTGTTTCAGCGGAAGGGGATTCAG 418
|||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 351 GTAGATTCAATGAGACACAAGACATAACGGCGAATCTTGTTTCAGCAGAAGGGGATTCAG 410
Query 419 AGAATGTTTTGAATCATGTTTGGAGTGGACGTTTGAGTTTTGATGGGTCTGAAAAGAGTG 478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 AGAATGGTTTGAATCATGTTTGGAGTGGACGTTTGAGTTTTGATGGGTCTGAAAAGAGTG 470
Query 479 CTGATGATCTAGTAGACCCTTTAATGGGAGAGGGAAAGCGGAGAGAAAGAAGCAGTCAAA 538
|||||||||| | | |||||||||| | ||||||||||||||| ||||| ||||
Sbjct 471 CTGATGATCT-G--G------TAATGGGAGACGAAAAGCGGAGAGAAAGGAGCAGCCAAA 521
Query 539 GTTTGGATCTTTCGGATATGAAGTTTGATAATGATAAGTTTAAGAAGACGAGAAAACCTT 598
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 522 GTTTGGATCTTTCGGATATGAAGTTTGATAATGTTAAGTTTAAGAAGACAAGAAAGCCTT 581
Query 599 CAAAGCCACCGAGGCCTCCAAAAGGTCCGTTACTGAGTGCTAATGACCAGAAGTTGATGA 658
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 582 CAAAGCCGCCGAGGCCTCCAAAAGGTCCATTACTGAGTGCAAATGACCAGAAGTTGATGA 641
Query 659 GGGAAATCACGGAGCTTGCTATGAGAAAGCGTGCTCGGATTGAACGGATGAAAACACTCA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 642 GGGAAATCACGGAGCTTGCTATGAGAAAGCGTGCTCGGATTGAACGGATGAAAACACTGA 701
Query 719 GAAGATTGAAAGCAGCAAAGTCCTCGTCTCCCTGCAGTAGCATTTTCGCCATGATAGTGA 778
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 702 GAAGATTGAAAGCAGCAAAGTCCTCGTCTCCCTGCAGTAGTATTTTCGCCATGATAGTGA 761
Query 779 CGGTTATATTCTTCGTCTTCTTAATCTTTCAAGGGTTCTTCACAAGCAATGCGAGTTTGA 838
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 762 CGGTTATATTCTTCGTCTTCTTAATCTTTCAAGGGTTCTTCACAAGCAATGCAAGTTTGA 821
Query 839 ATTCTGACAATTCACCTGCACCAAATAATTCAGCTAATAACCGTATGGTCTCTGTTCAGT 898
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 822 ATTCAGACAATTCACCTGCACCAAATAATTCAGCCAATAACCGTATGGTCTCTGTTCAAT 881
Query 899 TCTACAATGAGTTTGCTCCTCGTGAGAGAATCGATCCCAGCCCTACTACTTCTTTCAGGT 958
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 882 TCTACAGTGAGTTTGCTCCTCGTGAGAGAATCGATCCCAGCCCAACTACTTCTTTCAGGT 941
Query 959 ATAAGAGAGTCTCAGGTGCAGACAATGAAGAAAACACAAGAGAAGTTACCAGATGAGTTT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 ATAAGAGAGTCTCAGGTGCAGACAATGAAGAAAACACAAGAGAAGTTACCAGATGAGTTT 1001
Query 1019 CTTCTCTTTGGATTCTTGTAAAATGTAACCAAAAACACTACTTATGTTTTTGTTTGTTCG 1078
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1002 CTTCTCTTCGGATTCTTGTAAAATATAACCAAAAACACTACTTATGTTTTTGTTTGTTCG 1061
Query 1079 TAAATTCTTGACATCACTCTATTGTTCCTTTGATCTGTTTGTGTTCACATGTTTGTCTCT 1138
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1062 TAAATTCTTGACATCACTCTATTGTTCCTTTGCTCTGTTTGTGTTCACATGTTTCTCTCT 1121
Query 1139 CTGTTACTCTTCTTGTAAATATTCTTATGGATGAATCTGCTCAtttttt 1187
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1122 GTGTTACTCTTCTTGTATATATTCTTATGGATGAATCTGCTCATTTTTT 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5