BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01970.1
Length=2837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490380 jgi|Araly1|490380|fgenesh2_kg.6__3514__AT4G01970.1 4207 0.0
> Ahg490380 jgi|Araly1|490380|fgenesh2_kg.6__3514__AT4G01970.1
Length=2796
Score = 4207 bits (2278), Expect = 0.0
Identities = 2633/2801 (94%), Gaps = 37/2801 (1%)
Strand=Plus/Plus
Query 5 ACCATCCTCTGTTTTCATTTCCTCTGTTTTTCAAACTTCCTCTGTTCTCTCATGGCTCCA 64
||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1 ACCATTCTCTGTTTTCATTTCCTCTGTTTAGCAAGCTTCCTCTGTTCTCTCATGGCTCCA 60
Query 65 CTTCACGAATCTCTGTCATCAATCAACGATGTAATCGAATCCAAACCTCTTTTTGTTCCA 124
||| |||| |||||||||||||||| |||||| ||||||||||||||||||| |||||||
Sbjct 61 CTTAACGATTCTCTGTCATCAATCATCGATGTCATCGAATCCAAACCTCTTTGTGTTCCA 120
Query 125 -ATAACTAAGCCAATCTTGCAGCCAAACTCATTTAACCTATCCGAAGGGTCTC-TCTGTG 182
| |||||||||||| ||||| |||||||| |||||||||||| ||||| ||| || |||
Sbjct 121 CA-AACTAAGCCAATATTGCAACCAAACTCTTTTAACCTATCCCAAGGGACTCTTC-GTG 178
Query 183 CCAAAGACTCTACTCCAATCCTCTTTGATGTTCCTCAAAACGTAACTTTCACACCATTCT 242
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 179 CCAAAGACTCTTCTCCAATCCTCTTTGATGTTCCTCAAAACGTAACTTTCACACCATTTT 238
Query 243 CATCTCACTCCATATCCACTGATGCTCCTCTCCCAATCCTCCTCCGAGTTCAAGCCAACG 302
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 239 CATCTCACTCCATATCCACTGATGCTCCTCTGCCAATCCTCCTCCGAGTTCAAGCCAACG 298
Query 303 CTCACAAAGGAGGGTTTCTCGGATTCACCAAAGAATCACCCTCTGATCGT-CTCACAAAC 361
|||||| |||||||||||| ||||||||||||||||||||||| |||| | | ||| |||
Sbjct 299 CTCACAGAGGAGGGTTTCTTGGATTCACCAAAGAATCACCCTCAGATCTTGC-CACGAAC 357
Query 362 TCCTTGGGAAGATTCGAAGACAGAGAGTTT-CTCAGTCTTTTCCGGTTCAAAATGTGGTG 420
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 358 TCTTTGGGAAGATTCGAAGACAGAGA-TTTCCTCAGTCTTTTCCGGTTCAAAATGTGGTG 416
Query 421 GTCGACGGCTTGGATCGGGAAATCAGGGTCGGATCTTCAAGCCGAGACTCAGTGGGTGAT 480
|||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||
Sbjct 417 GTCGACGGCTTGGATCGGAAAATCCGGGTCGGATCTTCAAGCCGAGACACAATGGGTGAT 476
Query 481 GCTAAAGATTCCTGAGATCGATTCCTACGTGGCCATCATACCAACCATTGAAGGAGCTTT 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 477 GCTAAAGATTCCTGAGATCGATTCCTACGTGGCCATCATACCAACCATAGAAGGATCTTT 536
Query 541 TAGGGCTTCACTT-ACTCCTGGTGAGAAAGGTAATGTCTTGATTTGTGCAGAGAGTGGCT 599
||||||||||||| || ||||| || |||||||| |||||||||| ||||||||||||||
Sbjct 537 TAGGGCTTCACTTAAC-CCTGGCGAAAAAGGTAACGTCTTGATTTCTGCAGAGAGTGGCT 595
Query 600 CAACTAAAGTAAAAGAGTCATCTTTCAAATCCATTGCCTACATTCACATTTGTGACAACC 659
| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 596 CTACTAAAGTAAAAGAGTCGTCTTTCAATTCCATTGCCTACATTCACATTTGTGACAATC 655
Query 660 CCTATAACCTCATGAAAGAGGCTTTTAGTGCACTTCGTGTTCATATGAACACTTTCAAGC 719
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTTATAACCTCATGAGAGAGGCTTTTAGTGCACTTCGTGTTCATATGAACACTTTCAAGC 715
Query 720 TTCTAGAAGAGAAGAAGCTTCCGAAAATCGTCGATAAGTTTGGATGGTGCACTTGGGATG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTCTAGAAGAGAAGAAGCTTCCGAAAATCGTCGATAAGTTTGGATGGTGCACTTGGGATG 775
Query 780 CTTGCTACTTGACCGTTGATCCTGCAACCATTTGGACTGGAGTTAAGGAGTTTGAAGATG 839
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 776 CTTGCTACTTGACCGTTGATCCTGCAACCATTTGGACCGGAGTTAAGGAGTTTGAAGATG 835
Query 840 GTGGGGTGTGTCCGAAGTTTGTCATCATTGATGATGGATGGCAAAGTATTAACTTTGATG 899
|||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 836 GTGGTGTATGTCCGAAGTTTATCATCATTGATGATGGATGGCAAAGTATAAACTTTGATG 895
Query 900 GTGATGAGCTAGACAAAGACGCTGAGAATCTTGTTCTTGGTGGGGAGCAAATGACTGCGA 959
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 896 GTGATGAGCTGGACAAAGACGCTGAGAATCTTGTTCTTGGTGGAGAGCAAATGACTGCGA 955
Query 960 GGCTTACCAGCTTCAAGGAGTGTAAGAAGTTTAGAAACTATAAAGGTGGATCCTTTATAA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 956 GGCTTACCAGCTTCAAGGAGTGTAAGAAGTTTAGAAACTATAAAGGTGGATCCTTTTTAT 1015
Query 1020 CATCTGATGCATCTCACTTCAATCCTCTCAAGCCGAAGATGCTTATCTACAAAGCGACCG 1079
|||||||||| |||||||| |||||| ||||||||||||| ||||||||||||| ||||
Sbjct 1016 CATCTGATGCGTCTCACTTTGATCCTCACAAGCCGAAGATGATTATCTACAAAGCAACCG 1075
Query 1080 AGCGAATTCAGGCGATTATATTGAGACGGAAGTTGGTTAAGGAGTCTGGGGAACAAGATC 1139
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1076 AGCGAATTCAGGCGATTATATTGAGACGGAAGTTGGTTAAGGAATCTGGGGATCAAGATC 1135
Query 1140 TGAC-CGAACTTGATGAAAAGATCAAGATTTTGAGTGAAGAACTCAATGCAATGTTTGAT 1198
| || |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1136 T-ACACGAACTTGATGAAAAGATCAAGATTTTGAGCGAAGAACTCAACGCAATGTTTGAT 1194
Query 1199 GAGGTTGAGAAAGAAGAGTCTTTGGGTTCTGATGATGTTTCTGGCTCAGGTATGGCGGCT 1258
| |||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 1195 G---TTGAGAAAGAAGAGTCTTCGGGTTCTGAGGATGTTTCAGGCTCAGGTATGGCGGCT 1251
Query 1259 TTCACAAAGGATTTGAGGTTAAGGTTTAAGAG-TTTAGATGATATATATGTGTGGCATGC 1317
||||| | |||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 1252 TTCACTAGGGATTTGAGGTTGAGGTTTAAG-GCTTTAGATGATATATATGTGTGGCATGC 1310
Query 1318 TCTTTGTGGTGCTTGGAATGGTGTTAGGCCTGAAACCATGATGGATTTG-AAGGCCAAGG 1376
||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 1311 TCTTTGTGGTGCTTGGAATGGTGTTAGGCCTGAAACCATGACGGATTTGGAAG-CCAAGG 1369
Query 1377 TTGCTCCTTTTGAGCTTTCACCTAGTCTAGGCGCTACGATGGCTGATCTCGCAGTCGACA 1436
||| ||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1370 TTGTTCCTTTTGATCTTTCACCTGGTCTAGATGCTACGATGACTGATCTCGCAGTCGACA 1429
Query 1437 AGGTTGTAGAAGCTGGGATTGGTCTTGTTCATCCTTCTAAAGCTCATGAATTCTACGACT 1496
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1430 AGATTGTAGAAGCTGGGATTGGTCTAGTTCATCCTTCTAAAGCTCATGAATTCTACGATT 1489
Query 1497 CGATGCACTCTTATCTTGCTAGTGTTGGTGTTACAGGAGCCAAGATTGATGTTTTCCAAA 1556
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 CGATGCATTCTTATCTTGCTAGTGTTGGTGTTACAGGAGCCAAGATTGATGTTTTCCAAA 1549
Query 1557 CCTTGGAGTCACTAGCAGAAGAACATGGAGGACGAGTGGAGCTTGCTAAAGCTTACTACG 1616
|||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1550 CCTTAGAGTCAGTAGCAGAAGAACATGGAGGACGAGTGGAGCTTGCTAAAGGTTACTACG 1609
Query 1617 ATGGTCTGACCGAATCCATGATCAAGAATTTTAATGGAACTGATGTCATTGCGAGTATGC 1676
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1610 ATGGTCTGACCGAATCCATGATCAAGAATTTCAATGGAACTGAAGTCATTGCAAGTATGC 1669
Query 1677 AACAGTGCAATGAGTTCTTCTTCCTTGCCACAAAGCAAATCTCTATTGGCAGAGTTGGTG 1736
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 AGCAGTGCAATGAGTTCTTCTTCCTTGCCACAAAGCAAATCTCTATTGGCAGAGTTGGTG 1729
Query 1737 ATGATTTTTGGTGGCAAGACCCATATGGTGACCCACAAGGAGTATATTGGCTACAAGGAG 1796
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1730 ATGATTTTTGGTGGCAAGACCCATATGGTGACCCACAAGGAGTGTATTGGCTACAAGGAG 1789
Query 1797 TTCACATGATTCACTGTTCTTACAACAGTATTTGGATGGGTCAAATGATTCAACCAGATT 1856
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1790 TTCACATGATTCACTGTTCTTACAACAGTTTTTGGATGGGTCAAATGATTCAACCCGATT 1849
Query 1857 GGGACATGTTCCAATCAGACCATGTCTGTGCCGAGTACCACGCCGCATCTCGAGCCATTT 1916
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1850 GGGACATGTTCCAATCAGACCATGTCTGTGCCGAGTACCACGCTGCATCTCGAGCCATCT 1909
Query 1917 GCGGTGGGCCTGTCTATCTCAGTGACCATCTTGGCAAAGCCTCACATAACTTTGATCTCA 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 GCGGTGGGCCTGTCTATCTCAGTGACCATCTTGGCAAAGCCTCACATAACTTTGATCTCA 1969
Query 1977 TCAAGAAACTTGCTTTCTTTGATGGTACCATCCCAAGGTGTGTCCACTATGCTCTTCCCA 2036
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1970 TCAAGAAACTTGCATTCTTTGATGGTACCATCCCAAGGTGTGTCCACTATGCTCTTCCTA 2029
Query 2037 CTAGAGATTCGCTCTTCAAGAACCCTTTGTTTGACAAAGAGTCAATCCTCAAGATCTTCA 2096
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2030 CTAGAGATTCGCTCTTCAAGAACCCTTTGTTTGACAAAGAATCAATCCTCAAGATCTTCA 2089
Query 2097 ACTTCAACAAGTTTGGAGGAGTGATTGGAACATTTAACTGTCAAGGTGCTGGGTGGAGCC 2156
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 2090 ACTTCAACAAGTTTGGAGGAGTAATTGGAGCATTTAACTGTCAAGGTGCTGGGTGGAGCC 2149
Query 2157 CAGAGGAGCATAGGTTCAAAGGATACAAAGAATGTTACACGACAGTTTCGGGAACAGTTC 2216
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 CAAAGGAGCATAGGTTCAAAGGATACAAAGAATGTTACACGACAGTTTCGGGAACAGTTC 2209
Query 2217 ATGTCTCGGACATTGAATGGGATCAGAATCCAGAAGCTGCAGGCTCTCAGGTGA-CCTAC 2275
||||||||||| | |||||||||||||| |||||||||| | | |||||||||| || ||
Sbjct 2210 ATGTCTCGGACGTCGAATGGGATCAGAACCCAGAAGCTGAAAGTTCTCAGGTGAGCC-AC 2268
Query 2276 ACTGGAGATTACTTGGTTTACAAGCAACAATCTGAAGAAATCCTTTTCATGAACTCGAAA 2335
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 2269 ACCGGAGATTACTTGGTTTACAAGCAACAATCCGAAGAAATTCTTTTCATGAACTCAAAA 2328
Query 2336 TCAGAAGCGATGAAGATAACCCTTGAGCCATCCGCGTTTGACCTGTTGAGTTTCGTGCCA 2395
||||| ||||| |||||||| || ||||||||||| |||||||| || |||||||||| |
Sbjct 2329 TCAGACGCGATCAAGATAACTCTAGAGCCATCCGCATTTGACCTATTCAGTTTCGTGCTA 2388
Query 2396 GTCACGGAACTTGTAAGTTCAGGGGTTAGATTCGCACCTCTAGGGTTGATCAACATGTTC 2455
||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2389 GTCACGGAACTGGGAAGTTCAGGGGTTAGATTTGCACCTCTAGGGTTGATCAACATGTTC 2448
Query 2456 AACTGCGTCGGAACAGTCCAAGACATGAAGGTTACTGGTGATAACAGCATAAGAGTGGAC 2515
|||||||||||||| || ||||| ||| || ||||||||||||||||||||||||| |||
Sbjct 2449 AACTGCGTCGGAACTGTTCAAGAGATGGAGCTTACTGGTGATAACAGCATAAGAGTTGAC 2508
Query 2516 GTGAAAGGCGAAGGAAGATTCATGGCGTATTCGAGTTCAGCTCCGGTGAAGTGTTACTTG 2575
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2509 TTGAAAGGCGAAGGAAGATTCATGGCGTATTCGAGTTTAGCTCCGGTGATGTGTTACTTG 2568
Query 2576 AACGACAAGGAAGCTGAGTTTAAGTGGGAAGAAGAAACTGGTAAACTCAGTTTCTTTGTT 2635
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2569 AACAACAAGGAAGCTGAGTTTAAGTGGGAAGAAGAAACTGGGAAACTCAGTTTCTTTGTT 2628
Query 2636 CCTTGGGTTGAAGAATCTGGTGGCATCTCTCATCTGTctttcaccttttaataatttgtt 2695
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 2629 CCTTGGGTTGAAGAATCTGGAGGCATCTCTCATCTGTCTTTCACCTTTTAATGATTTGTT 2688
Query 2696 tggatttttgtttttcgttttccttttcttgcattttgTTATCAGAAGTTGGGTTGTCAA 2755
| |||||| ||||||||||||||||||| | | | || ||||||||||||
Sbjct 2689 TTGATTTT-GTTTTTCGTTTTCCTTTTC----A----G--A--AG---TTGGGTTGTCAA 2732
Query 2756 TTTCTGTTTGGTGTTTTACTTTTCAATTTGGAGACTTCTCA 2796
|||||||| ||| |||||||||||||||||||||||| |||
Sbjct 2733 TTTCTGTTCGGTCTTTTACTTTTCAATTTGGAGACTTATCA 2773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107071678695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5