BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01985.1 Length=1891 Score E Sequences producing significant alignments: (Bits) Value Ahg895812 jgi|Araly1|895812|Al_scaffold_0006_3808 135 9e-31 > Ahg895812 jgi|Araly1|895812|Al_scaffold_0006_3808 Length=786 Score = 135 bits (73), Expect = 9e-31 Identities = 399/547 (73%), Gaps = 60/547 (11%) Strand=Plus/Plus Query 1192 ggtggagcta-gtggtggagctagtggt-ggagctagtggcggagttggagGCGCTGGG- 1248 ||||||| || |||| |||| ||| | || | | |||| || ||||||| || ||| Sbjct 196 GGTGGAG-TAGGTGGAGGAGGAAGT-ATAGGTGGTGGTGGTGGTGTTGGAGCCG-GGGGA 252 Query 1249 GGAGCTGGTGGTAgtgttggag-cgggaggcggtgttggtggtggtgtaggaggtggagt 1307 ||||| |||||| ||||||||| |||| || || | ||||||||||| |||| || | Sbjct 253 GGAGCAGGTGGTGGTGTTGGAGCCGGG-GGAGGAGCAGGTGGTGGTGTTGGAGCCGG-G- 309 Query 1308 cggcggaggt-gtgggtggt-gc--tgttggaggagCCGTTGG---TGGCGC-TGTTGG- 1358 || |||| | || || ||| || |||||| | |||| ||| ||| | || || Sbjct 310 -GGAGGAGCTGGT-GGAGGTGGCAATGTTGG-TG-GCCG-TGGAAAAGGC-CATGGCGGT 363 Query 1359 AGGAGGTGGAGGCGGCAGTGTTGGTGGAGG-G--GGACGTGGTAGTGGTGGAGCTGGTGG 1415 | |||||| || |||| ||||| ||| | ||| | || ||| ||| | |||||| Sbjct 364 A-AAGGTGGTGGTAAAAGTGGTGGTGTAGGAGCCGGAGGAGG-AGT--TGGTGTTGGTGG 419 Query 1416 CGGAACTGGTGGTAGTGTTGGAGCg-ggaggaggt-gtaggagttggtggagg-ag-ggg 1471 ||||| ||| || || | || || | || ||| || | ||||| || ||| || || ||| Sbjct 420 CGGAATTGGAGG-AG-G-TGTAG-GTGGCGGA-GTCGGAGGAGGTGCTGGCGGTAGTGGG 474 Query 1472 -gtataggaggcggtgctgggggtggtgtaggaggtggagtcggcggaggtgttggtggt 1530 || ||| || |||||||| || |||| ||||||||||| || |||| |||||| Sbjct 475 AGTGGAGGTGGGGGTGCTGGAGGAGGTGCCGGAGGTGGAGT---TGGTGGTGGAGGTGGT 531 Query 1531 ggtgttagaggagccgttggtggtgCAGTTGGCGGAGGTGTTGGTGGAGC-G--GGACGT 1587 |||||| | || | |||| |||| || || |||||||||||||| || | ||| || Sbjct 532 GGTGTTGGTGGTGTTATTGGAGGTGGTGTCGGAGGAGGTGTTGGTGGCGCTGTTGGAGGT 591 Query 1588 GGT--AG-TGG--T-GGAGCTAGTGGCGG---AGCAGGAGCCGGAGGAGGA-G-C-TGGT 1635 ||| || ||| | || | | | ||||| | || | ||||||||| | | ||| Sbjct 592 GGTGGAGTTGGTTTAGGTGGTGGGGGCGGTCTTGTTGGTGGTGGAGGAGGAGGACTTGGC 651 Query 1636 GGGGGTGTTGGAGGCGGAGCAAATGTTGGTGTAGGAGTTGGAGCCGGGGGTAGTACAGGA 1695 || ||||||||||| |||||||||||||||||||||||||||||||||||| || |||| Sbjct 652 GGTGGTGTTGGAGGTGGAGCAAATGTTGGTGTAGGAGTTGGAGCCGGGGGTGGTGCAGGC 711 Query 1696 GGAGGAG 1702 ||||||| Sbjct 712 GGAGGAG 718 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71038306925 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5