BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01985.1
Length=1891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895812 jgi|Araly1|895812|Al_scaffold_0006_3808 135 9e-31
> Ahg895812 jgi|Araly1|895812|Al_scaffold_0006_3808
Length=786
Score = 135 bits (73), Expect = 9e-31
Identities = 399/547 (73%), Gaps = 60/547 (11%)
Strand=Plus/Plus
Query 1192 ggtggagcta-gtggtggagctagtggt-ggagctagtggcggagttggagGCGCTGGG- 1248
||||||| || |||| |||| ||| | || | | |||| || ||||||| || |||
Sbjct 196 GGTGGAG-TAGGTGGAGGAGGAAGT-ATAGGTGGTGGTGGTGGTGTTGGAGCCG-GGGGA 252
Query 1249 GGAGCTGGTGGTAgtgttggag-cgggaggcggtgttggtggtggtgtaggaggtggagt 1307
||||| |||||| ||||||||| |||| || || | ||||||||||| |||| || |
Sbjct 253 GGAGCAGGTGGTGGTGTTGGAGCCGGG-GGAGGAGCAGGTGGTGGTGTTGGAGCCGG-G- 309
Query 1308 cggcggaggt-gtgggtggt-gc--tgttggaggagCCGTTGG---TGGCGC-TGTTGG- 1358
|| |||| | || || ||| || |||||| | |||| ||| ||| | || ||
Sbjct 310 -GGAGGAGCTGGT-GGAGGTGGCAATGTTGG-TG-GCCG-TGGAAAAGGC-CATGGCGGT 363
Query 1359 AGGAGGTGGAGGCGGCAGTGTTGGTGGAGG-G--GGACGTGGTAGTGGTGGAGCTGGTGG 1415
| |||||| || |||| ||||| ||| | ||| | || ||| ||| | ||||||
Sbjct 364 A-AAGGTGGTGGTAAAAGTGGTGGTGTAGGAGCCGGAGGAGG-AGT--TGGTGTTGGTGG 419
Query 1416 CGGAACTGGTGGTAGTGTTGGAGCg-ggaggaggt-gtaggagttggtggagg-ag-ggg 1471
||||| ||| || || | || || | || ||| || | ||||| || ||| || || |||
Sbjct 420 CGGAATTGGAGG-AG-G-TGTAG-GTGGCGGA-GTCGGAGGAGGTGCTGGCGGTAGTGGG 474
Query 1472 -gtataggaggcggtgctgggggtggtgtaggaggtggagtcggcggaggtgttggtggt 1530
|| ||| || |||||||| || |||| ||||||||||| || |||| ||||||
Sbjct 475 AGTGGAGGTGGGGGTGCTGGAGGAGGTGCCGGAGGTGGAGT---TGGTGGTGGAGGTGGT 531
Query 1531 ggtgttagaggagccgttggtggtgCAGTTGGCGGAGGTGTTGGTGGAGC-G--GGACGT 1587
|||||| | || | |||| |||| || || |||||||||||||| || | ||| ||
Sbjct 532 GGTGTTGGTGGTGTTATTGGAGGTGGTGTCGGAGGAGGTGTTGGTGGCGCTGTTGGAGGT 591
Query 1588 GGT--AG-TGG--T-GGAGCTAGTGGCGG---AGCAGGAGCCGGAGGAGGA-G-C-TGGT 1635
||| || ||| | || | | | ||||| | || | ||||||||| | | |||
Sbjct 592 GGTGGAGTTGGTTTAGGTGGTGGGGGCGGTCTTGTTGGTGGTGGAGGAGGAGGACTTGGC 651
Query 1636 GGGGGTGTTGGAGGCGGAGCAAATGTTGGTGTAGGAGTTGGAGCCGGGGGTAGTACAGGA 1695
|| ||||||||||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 652 GGTGGTGTTGGAGGTGGAGCAAATGTTGGTGTAGGAGTTGGAGCCGGGGGTGGTGCAGGC 711
Query 1696 GGAGGAG 1702
|||||||
Sbjct 712 GGAGGAG 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71038306925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5