BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01990.1
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490379 jgi|Araly1|490379|fgenesh2_kg.6__3513__AT4G01990.1 2318 0.0
> Ahg490379 jgi|Araly1|490379|fgenesh2_kg.6__3513__AT4G01990.1
Length=1633
Score = 2318 bits (1255), Expect = 0.0
Identities = 1514/1639 (92%), Gaps = 17/1639 (1%)
Strand=Plus/Plus
Query 6 aaaaTTCAAAATCCGTAAATCTGATGATGCATTCCGTTTCACGGCTCGCGAGGAGGTTCT 65
||||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||
Sbjct 1 AAAATTCAAAATCCGTAAATCTGATAATGTACTCCGTTTCACGTCTCGCGAGGAGGTTCT 60
Query 66 GTGCAACGCTCGCTACTGCTACGGCGGAGATTAGCGGCGAGGCTGCTGCTTCTGTTCCGA 125
|||| ||||||||| || || |||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GTGCGACGCTCGCTGCTTCTCCGGCGGCGATTAGCGGCGAGGCTGCTGCTTCTGTTCCGA 120
Query 126 CGAAGGCGAAAAAGCATCGGTCAATATACAAGAAACTCTCAAGCCTTGGCACGAGGGGAG 185
|||||||||||||| ||| || ||||||||||||||||||| |||||||||| || |
Sbjct 121 CGAAGGCGAAAAAGAATCCATCGGTATACAAGAAACTCTCAAGTCTTGGCACGA--GG-G 177
Query 186 GAGGGAAAATGGAGGAAACGCTAAATCAGTTCGTCATGGAAGGCGTACCTGTCAAAAAAC 245
| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 178 GTGGGAAAATGGAGGAAACGCTAAATCAATTCGTCATGGAAGGTGTACCTGTTAAAAAAC 237
Query 246 ACGACCTCATTCGCTACGCAAAGGATCTTCGCAAGTTTCGTCAACCTCAACGCGCTCTCG 305
|||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 238 ACGAGCTTATTCGCTACGCAAAGGATCTTCGCAAGTTTCGTCAACCACAACGCGCCCTCG 297
Query 306 AGATCTTTGAGTGGATGGAAAGAAAGGAAATAG-CGTTTACTGGCAGCGATCACGCGATT 364
||||||||||||||||||||||||| ||||| | | |||||||||||||||||||| |||
Sbjct 298 AGATCTTTGAGTGGATGGAAAGAAAAGAAATCGTC-TTTACTGGCAGCGATCACGCAATT 356
Query 365 CGTTTGAATCTAATTGCAAAGAGTAAAGGCTTAGAGGCGGCTGAGACCTACTTCAACAGT 424
|||||| |||| ||||| |||| |||||||||||||||||| || |||||||| ||||||
Sbjct 357 CGTTTGGATCTTATTGCGAAGACTAAAGGCTTAGAGGCGGCGGAAACCTACTTTAACAGT 416
Query 425 TTAGACGATTCTATTAAGAATCAGTCCACTTATGGTTC-CTTATTGAACTGTTACTGTGT 483
||| |||||||||||||||||||||| ||||||||||| | |||||||||| ||||| ||
Sbjct 417 TTAAACGATTCTATTAAGAATCAGTCGACTTATGGTTCGC-TATTGAACTGCTACTGCGT 475
Query 484 GGAAAAGGAGGAAGTTAAAGCAAAGGCTCATTTTGAAAATATGGTTGATCTCAATCATGT 543
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 476 GGAAAAGGAGGAAGAGAAGGCAAAGGCTCATTTTGAAAACATGGTTGATCTCAATCATGT 535
Query 544 GAGTAATTCTTTGCCGTTTAATAACCTGATGGCTATGTATATGGGGCTAGGTCAA-CCAG 602
||||||||| |||||||||||||| ||||||||||||||| || || |||||||| || |
Sbjct 536 GAGTAATTCATTGCCGTTTAATAATCTGATGGCTATGTATTTGCGGATAGGTCAATCC-G 594
Query 603 AGAAGGTGCCTGCATTGGTTGTTGCGATGAAAGAGAAGAGTATTACTCCTTGTGATATTA 662
||||||| |||||||||||||||||||||||| |||||| ||| || ||||||||||| |
Sbjct 595 AGAAGGTACCTGCATTGGTTGTTGCGATGAAACAGAAGAATATCACCCCTTGTGATATCA 654
Query 663 CTTACTCCATGTGGATACAAAGCTGTGGAAGTTTAAAGGATTTAGATGGAGTAGAGAAGG 722
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 655 CTTACTCTATGTGGATACAAAGCTGTGGAAGTTTAAAGGACTTAGATGGAGTAGAGAAGG 714
Query 723 TTCTTGATGAAATGAAAGCAGAAGGTGAAGGTATTTTCTCTTGGAATACATTTGCTAATC 782
|||||||||||||||||||||||||||||||||||| ||| ||| |||| ||||||||||
Sbjct 715 TTCTTGATGAAATGAAAGCAGAAGGTGAAGGTATTTCCTCCTGGGATACTTTTGCTAATC 774
Query 783 TTGCAGCAATTTATATTAAAGTCGGTCTCTACGGTAAAGCAGAAGAGGCGTTGAAATCTC 842
| ||||||||||||||||||||||| ||||| | |||||||||||||||| |||||||||
Sbjct 775 TGGCAGCAATTTATATTAAAGTCGGCCTCTATGATAAAGCAGAAGAGGCGCTGAAATCTC 834
Query 843 TGGAGAACAATATGAATCCTGACGTACGTGATTGTTATCATTTTCTCATTAACTTGTATA 902
|||||||||| ||||||||| || | ||||||||||||||||||||||||| |||||||
Sbjct 835 TGGAGAACAAGATGAATCCTCACATCCGTGATTGTTATCATTTTCTCATTAGCTTGTATG 894
Query 903 CTGGAATTGCAAATGCTTCTGAGGTTTATCGAGTTTGGGATTTGCTTAAGAAAAGATACC 962
|||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||
Sbjct 895 CTGGAATTGCAAATGCTTCTGAGGTTTATCGAGTTTGGGATTTGCTGAAGAAACGACACC 954
Query 963 CTAATGTCAACAATTCAAGCTATCTTACAATGCTTCGAGCACTGAGTAAACTCGATGACA 1022
|||||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||
Sbjct 955 CTAATGTCAACAATTCTAGCTATCTTACAATGCTCCAAGCACTGAGTAAACTTAATGACA 1014
Query 1023 TTGATGGAGTCAAGAAAGTCTTTGCAGAATGGGAATCGACATGCTGGACTTACGATATGC 1082
||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1015 TTGATGGAGTCAAGAAAATCTTTACAGAATGGGAATCAACATGCTGGACTTACGATATGC 1074
Query 1083 GGATGGCGAATGTAGCGATTAGCAGCTACTTAAAGCAGAACATGTACGAAGAAGCTGAGG 1142
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GGATGGCTAATGTAGCGATTAGCAGCTACTTAAAGCAGAACATGTACGAAGAAGCTGAGG 1134
Query 1143 CTGTTTTCAACGGCGCCATGAAAAAGTGTAAAGGTCAATTCTCAAAGGCAAGGCAGCTTT 1202
|||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1135 CTGTTTTCAATGGCGCCATGACAAAGTGTAAAGGTCAATTCTCAAAGGCTAGGCAGCTTT 1194
Query 1203 TGATGATGCACCTGTTGAAGAACGATCAGGCAGATTTGGCTCTGAAGCATTTTGAAGCGG 1262
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TGATGATGCACCTGCTGAAGAACGATCAGGCAGATTTGGCTCTGAAGCATTTTGAAGCGG 1254
Query 1263 CGGTTTTGGATCAAGACAAGAACTGGACTTGGAGCTCAGAGCTGATCAGTTCGTTCTTTC 1322
| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1255 CAGTTTTGGATCTAGACAAGAACTGGACTTGGAGCTCAGAGCTGATCAGTTCCTTCTTTC 1314
Query 1323 TTCACTTTGAGGAAGCCAAAGACGTTGATGGAGCAGAAGAATTCTGCAAAACCTTGACGA 1382
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1315 TTCACTTTGAGGAAGCCAAAGACGTTGATGGAGCAGAAGAATTCTGCAAAACCTTGCCGA 1374
Query 1383 AATGGAGTCCCCTCAGTTCTGAAACTTACACTCTTCTTATGAAGACTTACCTCGCTGCAG 1442
|||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1375 AATGGAGTCCCCTCGGATCTGAAACTTACACTCTTCTTATGAAGACTTATCTCTCTGCAG 1434
Query 1443 GGAAAGCTTGTCCGGATATGAAAAAGAGATTGGAAGAACAAGGGATCCTGGTAGACGAAG 1502
||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 1435 AGAAAGCTTGTCCGGATATGAAAAAGAGGTTGGAGGAACAAGGGATCCAAGTAGACGAAG 1494
Query 1503 AGCAAGAATGTTTGCTTAGCAAGATTTGCCCTTGATTCATCCTAAAGCTT-A----GTA- 1556
||||||||||||||||||| ||||||||| |||||||||||||| ||||| | ||
Sbjct 1495 AGCAAGAATGTTTGCTTAGTAAGATTTGCGCTTGATTCATCCTACAGCTTGACTCTGTCT 1554
Query 1557 AT-GATA-AGTGAATGTTCTGTAAAACTAAGCATTTGAAGCATTTTGTTCGGACTCATGT 1614
| || | ||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 1555 AGCGACATAGTTAATGTTCTGTAAAACTATGCATTTGAAGCATTTTGTTCAGACTCATTT 1614
Query 1615 TCTCGTTATAGTTTGCCTT 1633
|||||||||||||||||||
Sbjct 1615 TCTCGTTATAGTTTGCCTT 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5