BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01995.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943543 jgi|Araly1|943543|scaffold_604087.1 1234 0.0
> Ahg943543 jgi|Araly1|943543|scaffold_604087.1
Length=834
Score = 1234 bits (668), Expect = 0.0
Identities = 781/833 (94%), Gaps = 17/833 (2%)
Strand=Plus/Plus
Query 2 AAAAACTTGTAAGGCCAGAAATGGCTGTTCTTATCCAGGTTCTTCTTCCTCCTCCGACGA 61
||||||||| |||||||||||||||| | |||||||| | ||||||||||| ||||||
Sbjct 3 AAAAACTTGGAAGGCCAGAAATGGCTATCCTTATCCATCTGCTTCTTCCTCCGACGACGA 62
Query 62 CTATCGTCTTCTCCAACTCATTTTCTACAAAGTTAA---T----A---C---T--CACGC 106
|||||||||||||||||||||||||||||||||||| | | | | |||||
Sbjct 63 CTATCGTCTTCTCCAACTCATTTTCTACAAAGTTAATCCTACGAAGTCCTAATCACACGC 122
Query 107 GTCGTCTTCGTTGCCGTATCTCTAATTCGTCAGAGGTTAAATCAGATGAAGGAGCTCCGA 166
| ||| | ||||||||||||| |||| ||||||||||||||||||||||||||| |||
Sbjct 123 GGCGTGTGATTTGCCGTATCTCTGATTCTTCAGAGGTTAAATCAGATGAAGGAGCTTCGA 182
Query 167 AGTTGGAGTATAAGCCAGGACCTCTCGACGATTTCTTCATGCAATCGTTCCGGAACAAAT 226
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 183 AGTTGGAGTATAAGCCAGGACTTCTCGACGATTTCTTCATGCAATCGTTCCGGAACAAAT 242
Query 227 TGGTCGAGGAAGTCGGGTCGGATTCAGAGAAACCCGGGTACGTTGGACTTATTGAGTTGG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TGGTCGAGGAAGTCGGGTCGGATTCAGAGAAACCCGGGTACGTTGGACTTATTGAGTTGG 302
Query 287 TTAAGCTTCTCTTGTTGAAAGGTCGTACTAGGTCGGAGACAAGTGATGCTGCGGTTCGAA 346
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 303 TGAAGCTTCTCTTGTTGAAAGGTCGTACTAGGTCGGAGACTAGTGATGCTGCGGTTCGAA 362
Query 347 TACTGAAATCGTTGTTTCCTCCGCTAATTTTAGAGCTTTACAAGCTTCTCATTGCTCCTA 406
||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 363 TACTGAAGTCGTTGTTTCCTCCACTCATTTTAGAGCTTTACAAGCTTCTCATAGCTCCTA 422
Query 407 TAGCACAAGGAAAATTAGCTGCTTTGATGGTTGCAAGAGTTACTGTACTTACATGTCAAT 466
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 423 TAGCACAAGGGAAATTAGCTGCTTTGATGGTTGCAAGAGTTACTGTACTTACCTGTCAAT 482
Query 467 GGCTCATGGGACCGAGCAAAGTAAACATCATCGATCTTCCTAATGGAGAATCTTGGGATA 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GGCTCATGGGACCGAGCAAAGTAAACATCATCGATCTTCCTAATGGAGAATCTTGGGATA 542
Query 527 GCGGGGTTTTCGTGGAGAAATGTCAGTATCTAGAAGAAAGCAAGTGTGTAGGAGTATGCA 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GCGGGGTTTTCGTGGAGAAATGTCAGTATCTAGAAGAAAGCAAGTGTGTAGGAGTATGCA 602
Query 587 TTAATACATGTAAACTACCAACTCAGACATTCTTTAAAGACTACATGGGAGTTCCTTTGG 646
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 603 TTAATACATGTAAACTACCAACTCAGACATTTTTTAAAGACTACATGGGAGTTCCTTTGT 662
Query 647 TGATGGAACCAAACTTCAAAGATTATAGTTGCCAGTTCAAATTCGGAGTAGCTCCACCGG 706
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 663 TGATGGAACCAAACTTCAAAGATTATAGTTGCCAGTTTAAATTTGGAGTAGCTCCACCGG 722
Query 707 AGGATGATGGCAATGTTAATGAACCATGTTTTGAGACATGCTCAATCGCTGGCCGCCGGA 766
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 723 AGGATGATGGCAATGTTACTGAACCATGTTTTGAGACATGCTCAATCGCCGGCCGCCGGA 782
Query 767 AATTAAAATCCGGGGAGTGTCCTTTAGCGTAAATATATCGTTT-TTATGTCCA 818
|||||||||| |||||||||||||| |||||||| | |||||| || ||||||
Sbjct 783 AATTAAAATCTGGGGAGTGTCCTTTGGCGTAAATCTGTCGTTTGTT-TGTCCA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5