BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02020.1
Length=2876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943541 jgi|Araly1|943541|scaffold_604085.1 3768 0.0
> Ahg943541 jgi|Araly1|943541|scaffold_604085.1
Length=2583
Score = 3768 bits (2040), Expect = 0.0
Identities = 2429/2612 (93%), Gaps = 46/2612 (2%)
Strand=Plus/Plus
Query 73 GGAAAGCTCGAGGAGTCATCAATGGTGACGGACGATAGCAACTCCTCTGGACGAATCAAG 132
|||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||
Sbjct 1 GGAAAGATCGAGGAGTCATCAATGGTGACGGATGATAGCGACTCCTCTGGAAGAATCAAG 60
Query 133 TCTCATGTAGATGATGATGATGATGGTGAAGAAGAAGAAGATAGACTCGAGGGTTTGGAA 192
||||| | | | | |||||||| | ||||||||||| ||||||||||||||
Sbjct 61 TCTCA--T-G-T-A-GATGATGA---T------GAAGAAGATAGGCTCGAGGGTTTGGAG 105
Query 193 AACAGATTAAGTGAGCTTAAAAGGAAAATTCAAGGAGAAAGAGTTAGGTCTATTAAAGAG 252
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 AACAGACTAAGTGAGCTTAAAAGGAAAATTCAAGGAGAAAGAGTTAGGTCTATTAAAGAG 165
Query 253 AAATTTGAGGCTAATAGAAAGAAAGTGGATGCTCATGTTTCTCCCTTTTCATCTGCTGCA 312
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 166 AAAATTGAGGCTAATAGAAAGAAAGTGGATGTTCATGTTTCTCCCTTTTCATCTGCTGCA 225
Query 313 TCGAGCCGAGCTACCGCAGAGGATAATGGAAATAGCAATATGCTTTCTTCGAGAAT-GAG 371
|||||||| |||||||||| ||| ||||||||||||||| || ||||||||||||| ||
Sbjct 226 TCGAGCCGGGCTACCGCAGGGGAGAATGGAAATAGCAATGTGTTTTCTTCGAGAATGGA- 284
Query 372 AATGCCACTCTGCAAGTTAAATGGTTTTTCTCATGGTGTGGGAGATAGAGACTATGTTCC 431
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 285 AATACCACTCTGCAAGTTAAATGGTTTTTCTCATGGGGTGGGAGATAGAGACTATGTTCC 344
Query 432 TACTAAGGATGTTATATCAGCAAGTGTCAAGCTTCCTATTGCTGAGAGAATACCGCCATA 491
|||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 345 TACTAAGGATGTTACAGCAGCAAGTGTCAAGCTTCCGATTGCTGAGAGAATACCGCCTTA 404
Query 492 CACTACCTGGATATTTTTGGACAGAAATCAAAGAATGGCTGAAGATCAGTCTGTGGTTGG 551
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 405 CACTACCTGGATATTTCTGGACAGAAATCAAAGAATGGCGGAAGATCAGTCTGTGGTTGG 464
Query 552 TCGAAGACAAATCTACTATGAACA-ACATGGTGGTGAGACGCTAATATGCAGCGATAGTG 610
|||||||||||| ||||||| | | ||||||||||||||| || ||||||||||||||||
Sbjct 465 TCGAAGACAAATTTACTATG-AGAGACATGGTGGTGAGACACTGATATGCAGCGATAGTG 523
Query 611 AGGAAGAACCAGAACCTGAGGAGGAAAAACGTGAATTTTCCGAGGGTGAAGATTCCATTA 670
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 524 AGGAAGAACCAGAACCTGAGGAGGAAAAACGTGAATATTCCGAGGGTGAAGACTCTGTTA 583
Query 671 TATGGTTAATTGGGCAGGAGTATGGCATGGGTGAGGAAGTGCAGGATGCCCTTTGCCAGT 730
||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 584 TATGGTTGATTGGGCAGGAGTATGGCATGGGTGAGGAAGTGCAGGATTCTCTTTGCCAGT 643
Query 731 TGCTAAGCGTAGATGCTTCTGATATCCTGGAAAGATACAATGAGCTCAAGTTGAAGGATA 790
| || |||||||||||||| || || |||| |||||||||||| |||||||||||||||
Sbjct 644 TTCTCAGCGTAGATGCTTCAGACATTCTGGGAAGATACAATGAACTCAAGTTGAAGGATG 703
Query 791 AGCAGAATACCGAGGAATTTTCTAATTCCGGATTCAAGCTGGGAATATCTCTGGAAAAGG 850
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 704 AGCAGAATACTGAGGACTTTTCTAATTCCGGATTCAAGCTTGGAATATCTCTGGAAAAGG 763
Query 851 GCCTTGGTGCAGCTCTAGATTCTTTTGATAATCTTTTCTGCCGCCGTTGCTTGGTATTTG 910
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 ACCTTGGTGCAGCTCTAGATTCTTTTGATAATCTTTTCTGCCGCCGTTGCTTGGTATTTG 823
Query 911 ACTGTCGTCTGCATGGATGTTCTCAGCCTTTGATTAGTGCTAGTGAAAAACAGCCTTATT 970
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 824 ACTGTCGTCTGCATGGATGTTCTCAGCCTTTAATTAGTGCTAGTGAAAAACAGCCTTATT 883
Query 971 GGTCTGATTATGAAGGTGATAGGAAACCCTGCAGCAAACATTGTTACCTCCAGCTCAAGG 1030
||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |
Sbjct 884 GGTCTGATTATGAAGGTGATAGGAAGCCCTGCAGCAATCATTGTTACCTCCAGGT---TG 940
Query 1031 CGGTCAGAGAAGTACCAGAAACATGCAGTAATTTTGCATCTAAAGCAGAAGAGAAAGCTT 1090
||||| || | | | || | || || | | |||||||||||||||||||||
Sbjct 941 AGGTCA-AG--G---C-G-GTCA-G-AG-AA----GTACCTAAAGCAGAAGAGAAAGCTT 985
Query 1091 CAGAAGAGGAATGCAGCAAGGCTGTCTCCTCTGATGTTCCC-CATGCTGCTGCTAGTGGT 1149
|| |||||||||||||||||||| ||||||| |||| ||| |||| |||||||| ||||
Sbjct 986 CAAAAGAGGAATGCAGCAAGGCTATCTCCTCAGATG-ACCCTCATGATGCTGCTACTGGT 1044
Query 1150 GTCAGTCTGCAAGTTGAGAAGACTGATATTGGTATCAAGAATGTAGATTCATCCTCTGGT 1209
|||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1045 GTCAATCTGCAAGTTGAGAAGACTGATATTGGTTTCAAGAATTTAGATTCATCCTCTGGT 1104
Query 1210 GTAGAACAAGAGCATGGAATTAGAGGAAAGCGTGAGGTCCC-AATTCTAAAAGACTCCAA 1268
||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 1105 GTAGAACAAGAGCATGGAATTAGGGGAAAGCGTGAGGTCCCGAA-TCTCGAAGACTCCAA 1163
Query 1269 TGATCTGCCTAATTTATCGAACAAGAAACAGAAGACCGCAGCCTCAGATACAAAAATGTC 1328
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1164 TGATCTGCCTAATTTATCAAACAAGAAACAGAAGACCACAGCCTCAGATACAAAAATGTC 1223
Query 1329 ATTTGTTAATTCTGTCCCTAGCTTAGATCAGGCATTGGATAGCACAAAGGGTGATCAAGG 1388
| ||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |
Sbjct 1224 ACTTGTTAATTCTACCCCTAGCTTAGATCAGGCATTTGATAGCTCAAAGGGTGATCAAAG 1283
Query 1389 TGGAACAACT--GA-CAATAAAGTAAACAGAGACTCAGAAGCTGATGCAAAAGAAGTAGG 1445
|| |||| | || |||||| |||||||||||||||| ||||||| ||||| ||||||
Sbjct 1284 TGAAACAGTTGAGACCAATAATGTAAACAGAGACTCAGGAGCTGATTCAAAACAAGTAGC 1343
Query 1446 TGAGCCTATTCCAGACAATTCGGTCCATGATGGTGGTTCCTCAATTTGTCAGCCACACCA 1505
||| ||| ||||||||| || ||||||||||||||||||||| ||||||||||| ||||
Sbjct 1344 TGAACCTCTTCCAGACATTTTGGTCCATGATGGTGGTTCCTCCGTTTGTCAGCCAGACCA 1403
Query 1506 TGGTAGTGGAAACGGAGCAATAATCATTGCAGAAATGTCTGAGACAAGTCGACCATCTAC 1565
|||||||||||| ||| |||||||| ||| |||||||||||||| || || |||||||||
Sbjct 1404 TGGTAGTGGAAATGGATCAATAATCGTTGGAGAAATGTCTGAGAAAATTCAACCATCTAC 1463
Query 1566 AGAGTGGAATCCTATCGAGAAGGATCTTTACTTGAAGGGAGTCGAAATCTTTGGAAGAAA 1625
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1464 AGAGTGGAACCCTATCGAGAAGGATCTTTACTTAAAGGGAGTCGAAATCTTTGGGAGAAA 1523
Query 1626 CAGCTGTCTTATTGCAAGAAACCTGCTTTCTGGCTTGAAGACATGCCTAGATGTGTCCAA 1685
|||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||
Sbjct 1524 CAGCTGTCTTATTGCAAGAAACCTACTTTCTGGCCTGAAGTCATGCCTAGATGTGTCCAG 1583
Query 1686 TTACATGCGTGAAAACGAAGTTTCAGTTTTTCGAAGATCTAGTACCCCAAATTTGCTGTT 1745
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1584 TTACATGCGTGAAAACGAAGTTTCAGTTTTTCGAAGATCTAGCACCCCAAATTTGCTGTT 1643
Query 1746 GGATGATGGCAGGACTGACCCAGGGAATGATAATGATGAGGTGCCTCCAAGGACAAGATT 1805
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1644 GGATGATGGCAGGACTGACCCAGGGAATGATGATGATGAGGTGCCTCCAAGGACAAGATT 1703
Query 1806 GTTCCGTAGAAAAGGCAAAACCCGGAAGCTAAAATACTCTACAAAGTCTGCTGGTCATCC 1865
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1704 GTTCCGTAGAAAAGGTAAAACTCGAAAGCTAAAATACTCTACAAAGTCTGCTGGTCATCC 1763
Query 1866 GTCTGTCTGGAAAAGAATAGCTGGTGGCAAAAACCAGTCCTGTAAACAATACACGCCGTG 1925
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1764 ATCTGTCTGGAAAAGAATAGCCGGTGGCAAAAACCAGTCCTGTAAACAATACACACCATG 1823
Query 1926 TGGATGCCTGTCAATGTGCGGAAAGGATTGCCCTTGTCTAACTAATGAAACTTGCTGCGA 1985
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1824 TGGATGCCTGTCAATGTGCGGAAAGGATTGCCCTTGTCTAACCAATGAAACTTGTTGCGA 1883
Query 1986 GAAATATTGCGGGTGCTCAAAAAGCTGTAAAAATCGTTTCCGAGGATGTCATTGTGCAAA 2045
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1884 GAAATATTGCGGGTGCTCAAAAAGCTGCAAAAATCGCTTCCGAGGATGTCATTGTGCAAA 1943
Query 2046 GAGTCAATGCAGAAGTAGGCAGTGTCCCTGCTTTGCTGCTGGCAGAGAATGTGATCCAGA 2105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1944 GAGTCAATGCAGAAGTAGGCAGTGTCCCTGCTTTGCTGCTGGCAGAGAATGTGATCCAGA 2003
Query 2106 TGTTTGCAGAAATTGCTGGGTTAGTTGTGGAGATGGTTCTCTCGGTGAAGCACCAAGACG 2165
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2004 TGTTTGCAGAAATTGCTGGGTTAGTTGTGGAGATGGTTCTCTCGGCGAAGCACCAAGACG 2063
Query 2166 CGGAGAAGGGCAATGCGGAAACATGAGACTTCTCCTGAGGCAACAACAGAGGATCCTATT 2225
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2064 CGGAGAAGGGCAATGCGGAAACATGAGACTTCTCCTGAGGCAACAACAGAGGATACTATT 2123
Query 2226 GGGAAAGTCTGATGTTGCTGGATGGGGTGCTTTTCTAAAGAACTCGGTCAGCAAAAATGA 2285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2124 GGGAAAGTCTGATGTTGCTGGATGGGGTGCTTTTCTAAAGAACTCGGTCAGCAAAAATGA 2183
Query 2286 ATACCTTGGAGAATACACCGGTGAATTGATCTCACACCATGAGGCGGATAAGCGTGGGAA 2345
|| || ||||||||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 2184 GTATCTCGGAGAATACACTGGCGAATTGATCTCACACCGCGAGGCGGATAAGCGTGGGAA 2243
Query 2346 AATATATGACCGGGCAAATTCGTCCTTCCTCTTTGACTTGAATGATCAGTACGTCCTCGA 2405
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2244 AATATATGACCGGGCAAATTCGTCCTTCCTTTTTGACTTGAATGATCAGTACGTCCTCGA 2303
Query 2406 TGCTCAACGCAAAGGTGACAAGCTGAAATTTGCCAATCACTCAGCTAAACCCAATTGCTA 2465
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2304 TGCTCAACGCAAAGGAGACAAGCTGAAATTTGCCAATCACTCGGCAAAACCCAATTGCTA 2363
Query 2466 CGCTAAGGTGATGTTTGTAGCAGGAGATCACAGGGTCGGGATTTTTGCAAACGAACGAAT 2525
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2364 TGCTAAGGTGATGTTTGTAGCAGGAGATCACAGGGTCGGCATTTTTGCAAACGAACGAAT 2423
Query 2526 AGAAGCTAGCGAAGAGCTTTTCTATGACTATAGATATGGACCAGACCAAGCACCAG-TGT 2584
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 2424 AGAAGCTAGCGAGGAGCTTTTCTATGACTACAGATATGGACCAGACCAAGCACCAGCT-T 2482
Query 2585 GGGCTCGCAAACCTGAAGGCTCCAAGAAAGATGATTCAGCCATTACTCATCGTAGAGCCA 2644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2483 GGGCTCGCAAACCTGAAGGCTCCAAGAAAGATGATTCAGCCATTACTCATCGTAGAGCCA 2542
Query 2645 GAAAGCACCAATCTCATTGATGATTACTGGCT 2676
||||||| ||||||||||||| ||| ||||||
Sbjct 2543 GAAAGCATCAATCTCATTGATCATTGCTGGCT 2574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108557198250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5