BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02030.2
Length=2647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943539 jgi|Araly1|943539|scaffold_604083.1 3711 0.0
> Ahg943539 jgi|Araly1|943539|scaffold_604083.1
Length=2385
Score = 3711 bits (2009), Expect = 0.0
Identities = 2133/2194 (97%), Gaps = 3/2194 (0%)
Strand=Plus/Plus
Query 332 GATCAAAAAGTCGAATTTGGAGGTGCTTCTGCAAAGACATGTTCAAATGGCTGCTGAGAT 391
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GATTAAAAAGTCGAATTTGGAGGTGCTTCTGCAAAGACATGTTCAAATGGCTGCTGAGAT 252
Query 392 TAAAAATCTCGACACAGACTTGCAAATGCTAGTCTATGAAAATTACAACAAGTTTATCAG 451
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 TAAAAATCTCGATACAGACTTGCAAATGCTAGTCTATGAAAATTACAACAAGTTTATCAG 312
Query 452 TGCAACAGATACAATCAAAAGGATGAAGAGTAATATTTTCGGGATGGAAGGCAATATGGA 511
|||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 313 TGCAACAGATACCATCAAAAGGATGAAGAGTAATATTTTTGGAATGGAAGGCAATATGGA 372
Query 512 CCAGCTTCTTCAGAAGATAATGTCAGTACAATCAAAGAGTGATGGGGTCAACACTTCTCT 571
||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct 373 CCAGCTTCTTCAGAAGATAATGTCAGTGCAATCAAGGAGTGATGGGGTTAACACTTCTCT 432
Query 572 TTTCGAAAAGAGAGAACATATAGAGAAACTGCACCGGACTCGTAATCTTCTTCGTAAAGT 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TTTCGAAAAGAGAGAACATATAGAGAAACTGCACCGGACTCGTAATCTTCTTCGTAAAGT 492
Query 632 TCAGTTCATCTATGATTTACCTGCAAGACTGCAAAAATGTATCAAGTCAGAAGCCTATGG 691
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 493 TCAGTTCATCTATGATTTACCTGCAAGACTGCAAAAATGCATCAAATCAGAAGCCTATGG 552
Query 692 CGATGCTGTCAGGTTCTATACTGGAGCAATGCCAATTCTCAAGGTATATGGCGATACATC 751
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 AGATGCTGTCAGGTTCTATACTGGAGCAATGCCAATTCTCAAGGTATATGGCGATACATC 612
Query 752 ATTCCAAGACTGCAGGCGAGCTTCCGAAGAAGCTATAGAAATTATCATAAAGAACTTGCA 811
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 613 ATTCCAAGACTGCAGACGAGCTTCCGAAGAAGCTATAGAAATCATCATAAAGAACTTGCA 672
Query 812 GACGAAGCTATTTTCAGATTCAGAATCCATACAGGCGAGAGCTGAAGCTGCAGTGCTTCT 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GACGAAGCTATTTTCAGATTCAGAATCCATACAGGCGAGAGCTGAAGCTGCAGTGCTTCT 732
Query 872 TAAGCAGTTAGATGTCCCTGTTGATAGCTTAAAGGCTAAACTGTTGGAAAAACTGGAACA 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TAAGCAGTTAGATGTCCCTGTTGATAGCTTAAAGGCTAAACTGTTGGAAAAACTGGAACA 792
Query 932 GTCTCTTGATGGTCTTCAAATAAAGCCTGAGGAGGCAAGTACACTTGTAGAGGACGATGA 991
|||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 793 ATCTCTTGATGGTCTGCAAATAAAGCCTGAGGAGGCAAGTAAACTTGTAGAGCACGATGA 852
Query 992 TTCATCTAACGATACAGAAAGCAATGACCAACATCCTGCTAAAATTCATGAGGATGCCGT 1051
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||
Sbjct 853 TTCATCTAACGATACAGAAAGCAATGACCAACATCTTGCTAAAATCCATGAGGATGCTGT 912
Query 1052 ACGTGGATTTTCTGAGGCCATACGTGCTTATCGAGAAATATTCCCCGACTCAGAAGAAAG 1111
||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 913 ACGTGGATTTTCTGAGGCCATGCGTGCTTACCGAGAGATATTCCCTGACTCAGAAGAAAG 972
Query 1112 ACTTTTCAAACTCGCGAGAGCCTTAACAGCAATGCACTTTGAGTACATGGAGCTATATAT 1171
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 973 ACTTTTCAAACTCGCGAGAGCCTTAACAGCAATGCACTTTGAGAACATGGAGCTATATAT 1032
Query 1172 aaaaaaaCGGGTTTCTGCAGCAGATTTTCTAGGAATTTTTCGAATTGTATGGGAAGATGT 1231
|| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1033 AAGAAAACGGGTTTCTGCAGCAGATTTTCTTGGAATTTTTCGAATTATATGGGAAGATGT 1092
Query 1232 GGTACTTATGGACGAGGTGCTACCTGAGGCTGCACTCTCTGATTTATCTGCAGAGGCTGC 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 GGTACTTATGGACGAGGTGCTACCTGAGGCTGCACTCTCTGATTTATCTGCAGAGGCTGC 1152
Query 1292 CCAGGTTACTCTTAAGCAATTTGTTGCGAGAATGTTTTCTCATCTTCAACAGGATATATC 1351
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1153 CCAGGTTACTCTTAAGCAATTTGTTGCGAGGACGTTTTCTCATCTTCAACAGGATATATC 1212
Query 1352 AGATACTCTCTTGAAATTCGATATCAACCAAAAGGAAGCAGTTGAAGGGGAACTCTTGAA 1411
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1213 AGATACTCTCTTGAAATTCGATATCAACCAAAAGGAAGCAGTTGAGGGGGAAATCTTGAA 1272
Query 1412 GGTTGTCCTGGAAGCTAGCCAAAAAGCAGTGCTACAAGGCACCACAAATATATTTCAGGA 1471
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1273 GGTTATCCTGGAAGCTAGCCAAAAAGCAGTGCTACAAGGCACCACAAATATATTCCAGGA 1332
Query 1472 CTTCCGTCAGCTTCTTGATGAAAAAACTGGAATATTTATAAAGATGAAGGATTTAATCAG 1531
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1333 CTTCCGTCAGCTTCTTGATGAAAACGCTGGAATATTTATAAAGATGAGGGATTTAATCAA 1392
Query 1532 TGGTTGGATTCAGAAAGGATCTCAAGACTTCTTCAGGTCACTAGAAGCTCAATTTCTAGT 1591
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1393 TAGTTGGATTCAGAAAGGATTTCAAGACTTCTTCAGGTCACTAGAAGCTCAATTTCTAGT 1452
Query 1592 GCTTTCTGGAAAAACTAGCTCATCAAACGATATAGAGGGAAAATCGAGTGACAAAATTCA 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 GCTTTCTGGAAAAACTAGCTCATCAAACGATATAGAGGGAAAATCGAGTGACAAAATTCA 1512
Query 1652 TGCTGGTCTCATTCTTGTATTGGCGCAGCTCTCTGTCTTCATCGAACAAAAGGTCATCCC 1711
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1513 TGCTGGTCTCATCCTTGTATTGGCGCAGCTCTCTGTATTCATCGAACAAAAGGTCATCCC 1572
Query 1712 GAGAGTTACTGAGGAAATAGCTGCTTCCTTCTCTGGTGGAAATTCCCAAGCCTTTGAGAA 1771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 GAGAGTTACTGAGGAAATAGCTGCTTCCTTCTCTGGTGGAAATTCCCAAGCCTTTGAGAA 1632
Query 1772 TGGACCTGCTTTTATTCCTGGAGAACTTTGCCGGGTCTTCCACGCAGCCAGCGAGAAACT 1831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 TGGACCTGCTTTTATTCCTGGAGAACTTTGCCGGGTCTTCCACGCAGCCAGCGAGAAACT 1692
Query 1832 TCTCCAGCATTACATAGACACAAGAACACAGAAGGTATCAGTTTTACTGAGAAAAAGGTT 1891
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1693 TCTCCAGCATTACATAGACACAAGAACACAGAAGGTATCGGTTTTGCTGAGAAAAAGGTT 1752
Query 1892 CAAGACACCTAACTGGGTTAAGCACAAGGAGCCACGAGAGGTTCACATGTATGTCGATAT 1951
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 CAAGACACCAAACTGGGTTAAGCACAAGGAGCCACGAGAGGTTCACATGTATGTCGATAT 1812
Query 1952 GTTTCTTCACGAGTTAGAAGAAGTTGGTAAAGAAGTGAAACAAGTTTTACCTCAAGGGAC 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 GTTTCTTCACGAGTTAGAAGAAGTTGGTAAAGAAGTGAAACAAGTTTTACCTCAAGGGAC 1872
Query 2012 -TTTCCGTAAGCACAAAAGAACAGACAGCAACGGAAGTAACACTACAACCTCATCACGAA 2070
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 ATTTC-GTAAGCACAAAAGAACAGACAGCAACGGAAGTAACACTACAACCTCATCACGAA 1931
Query 2071 GCAATACCCTCCATAATGATAAGATGGCACGGTCAAATTCACAAAGAGCTCGTAGTCAGC 2130
||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1932 GCAATACACTCCATAGCGATAAGATGACACGGTCAAATTCACAAAGAGCTCGTAGTCAGC 1991
Query 2131 TTTTCGAGACACATCTTGCAAAACTGTTCAAGCAAAAAGTAGAAATATTCACCAAGGTTG 2190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1992 TTTTCGAGACACATCTTGCAAAACTGTTCAAGCAAAAAGTAGAAATATTCACCAAGGTTG 2051
Query 2191 AATTTACCCAGGAATCCGTTGTTACAACAACAGTAAAACTTTGTCTGAAGAGTTTGCAAG 2250
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2052 AATTTACACAGGAATCCGTTGTTACAACAACGGTAAAACTCTGTCTGAAGAGTTTGCAAG 2111
Query 2251 AATATGTCCGTCTCCAAACGTTTAACCGGAGCGGGTTCCAGCAGATTCAGCTAGACATTC 2310
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2112 AATATGTCCGGCTCCAAACTTTTAACCGGAGCGGGTTCCAGCAGATTCAGCTAGACATTC 2171
Query 2311 AGTTCTTAAAAGCTCCATTGAAGGAAGCAGTTGAGGACGAAGCTGCAATAGACTTCTTGC 2370
|||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 2172 AGTTCTTAAAAGCTCCTTTGAAGGAAACAGTTGAGGACGAAGCTGCAATTGACTTCTTGC 2231
Query 2371 TCGACGAGGTGATCGTTGCGGCTTCGGAGAGATGTCTTGATGTGATTCCATTGGAGCCAC 2430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2232 TCGACGAGGTGATCGTTGCGGCTTCGGAGAGATGTCTTGATGTGATTCCATTGGAGCCAC 2291
Query 2431 CGATCTTGGACAAACTCATACAAGCTAAACTCGCTAAATCAAAGGAGCACAACAACAACA 2490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2292 CGATCTTGGACAAACTCATACAAGCTAAACTCGCTAAATCAAAGGAGCACAACAACAACA 2351
Query 2491 CAGTTTCTTCTTAAAAGTTTTCATAACTCA-AAC 2523
||||||||||||||||||| |||||||||| |||
Sbjct 2352 CAGTTTCTTCTTAAAAGTTGTCATAACTCAGAAC 2385
Score = 302 bits (163), Expect = 1e-80
Identities = 186/197 (94%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 64 AGAAGAAGCAGGAGTTTAGAAAAATGGCGACGGAGGCAGCTCCGATGGACGAAAAGGCGA 123
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGAAGCAGGA-ATAAAAAAAATGGCGACGGAGGCAGCTCCGATGGACGAAAAGGCGA 59
Query 124 AGAGAATGAGAGATCTATTGTCGAGCTTCTACGCACCGGATCCTTCAATCTCGACGAGTG 183
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 AGAGAATGAGAGATCTATTGTCGAGCTTCTACGCTCCGGATCCTTCAATCTCGACGAGTA 119
Query 184 GTTCCTCCATCAACGCCTCTTTCGATAACATCAACAGCACTTCCTTTGATGCTGATCAGT 243
|||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 120 ATTCCTCGATCAACGCTTCTTTCGATAACATCAACAGCACTTCATTCGATGCTGATCAGT 179
Query 244 ACATGGATCTCATGATT 260
|||||||||||||||||
Sbjct 180 ACATGGATCTCATGATT 196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99834532145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5