BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02040.1
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490376 jgi|Araly1|490376|fgenesh2_kg.6__3510__AT4G02040.1 582 1e-165
> Ahg490376 jgi|Araly1|490376|fgenesh2_kg.6__3510__AT4G02040.1
Length=708
Score = 582 bits (315), Expect = 1e-165
Identities = 428/478 (90%), Gaps = 26/478 (5%)
Strand=Plus/Plus
Query 17 ATGGCCACTGCGAT-G-TCTTACTCTTCTCAAAACCATCGATTCGAGCACCAAACCCTAA 74
|||||||||||||| | || | |||||||||||||||||||||||| ||| |||||||||
Sbjct 1 ATGGCCACTGCGATGGTTC-T-CTCTTCTCAAAACCATCGATTCGATCACGAAACCCTAA 58
Query 75 TCCACCGTAACCCTAAGCCTCGTCTTTGCCG-CA-------ACT-CTTCAACAGCTCCTC 125
|||||||||||||||| |||| |||||||| || || ||||||| |||||||
Sbjct 59 TCCACCGTAACCCTAATTCTCGCCTTTGCCGCCACTCTTCCGCTGCTTCAACGGCTCCTC 118
Query 126 GCCGACGCAAGCAAAGCCCTACGGTTGTTAAATCTCCGGCGGCGAAT-CCAAATCTTGTA 184
|||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 119 GCCGACGCAAGCGAAGCCCTACGGTTGTTAAATCTCCGGCGGCGAATACC-AATCTTGTA 177
Query 185 ATGGAACAAGTCAAGATCCTCAAACGCGGTGAGACATTGAGCGCGTTTAATAAGAACAAG 244
||||||||||||||||||||||||||||||||||||||||| ||| || |||||| |||
Sbjct 178 ATGGAACAAGTCAAGATCCTCAAACGCGGTGAGACATTGAGTGCG-TT--TAAGAAGAAG 234
Query 245 GAAAACATTAGCTCCGACGATACAAGACGACCTGTTTTGAAGATGATAAAAGATGTTGAT 304
|||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 235 GAAAACTTTAGCCCCGATGATACAAGACGACCTGTTTTGAAGATGATTAAAGATGTTGAT 294
Query 305 CTGATTGTATCGGCTACTAATAGAATTGGACCTGAACCAGAGATTTTGATGAAACAGATC 364
|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CTAATTGTATCGTCCACTAATAGAATTGGACCTGAACCAGAGATTTTGATGAAACAGATC 354
Query 365 GGAGCTT-TGG--GATTGCAGA-GCTTCGCCGGAGCTAATTGCTCTCTTTCGCCGCCTCC 420
||||||| | ||||||||| | ||||||||||||| ||||||| ||||||||| |||
Sbjct 355 GGAGCTTCTAAAAGATTGCAGAAG-TTCGCCGGAGCTATTTGCTCTATTTCGCCGCTTCC 413
Query 421 AAGCTGTGTTCCAATTCCATGTTTCTTAGGGACGAAGAACAATCTCCTTGTTTAGATC 478
|||||||||||| ||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct 414 AAGCTGTGTTCCGATTCCATGTTTCTTAGGGA--A-GAACAATCTCCTTATTTAGATC 468
Score = 215 bits (116), Expect = 5e-55
Identities = 227/274 (83%), Gaps = 33/274 (12%)
Strand=Plus/Plus
Query 519 TCTTTTGATGGTCTCGTAAGAGCAGATGTGTGAAGAAATCCTGAGATAGAGAGTAAACAA 578
||||| |||||||| |||||||||||| ||||||| |||||||||| |||||||||||||
Sbjct 467 TCTTTCGATGGTCTTGTAAGAGCAGATTTGTGAAG-AATCCTGAGAAAGAGAGTAAACAA 525
Query 579 ATCTCTTTGTTTATCTCAAAGAAGAAGAAGAAGATGGAGAATGTGATCACAAAACGCCAA 638
|| | |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 526 ATTTGTTTGTTTATCTC-----A-AAGAAGAAGATGGAGAATGTGATCACAAAACGCCAA 579
Query 639 TTGCAACCAAAATCTTTACTCTGTAATCGAGTGTTTTGGTGTAACAGTCACTGTGACTAT 698
||||||||||||| || ||| || |||||||||||||||||||||||||||| |
Sbjct 580 TTGCAACCAAAAT-TT------GTAGTCT-GTGTTTTGGTGTAACAGTCACTGTGACTCT 631
Query 699 TTTCAATCGCttttttttAGTTTTGTTTCGGATTTTGAAGTTTGTAGTTGTCACTTT-CA 757
|||| || |||||| | | |||||||| ||||||||||||||||| ||
Sbjct 632 TTTCTATGGCTTTT-----G----G------ATTTTGAATTTTGTAGTTGTCACTTTTCA 676
Query 758 CATGGGATTCAAATCTCTCCTTATGCAATAAAAA 791
|||| |||||||||||| ||||||||||||||
Sbjct 677 CATG--ATTCAAATCTCTTTTTATGCAATAAAAA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30460210683
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5