BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02070.1
Length=3975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943535 jgi|Araly1|943535|scaffold_604079.1 6318 0.0
Ahg913145 jgi|Araly1|913145|Al_scaffold_0001_3399 265 2e-69
Ahg943306 jgi|Araly1|943306|scaffold_603850.1 261 3e-68
Ahg915788 jgi|Araly1|915788|Al_scaffold_0008_539 255 1e-66
> Ahg943535 jgi|Araly1|943535|scaffold_604079.1
Length=4022
Score = 6318 bits (3421), Expect = 0.0
Identities = 3800/3985 (95%), Gaps = 18/3985 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCCGTCTCGCCGACAGATCAGCGGAAGATCTCCGTTGGTGAACCAGCAGCGTCAA 60
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCTCCGTCACGCCGACAGATCAGTGGAAGATCTCCGTTGGTGAACCAGCAGCGTCAA 80
Query 61 ATCACCTCCTTCTTTGGGAAATCTGCTTCATCATCTTCTTCTCCGTCTCCATCTCCTTCA 120
||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||
Sbjct 81 ATCACCTCCTTCTTTGGCAAATCTGCTTCCTCTTCTTCTTCTCCGTCTCCATCACCTTCA 140
Query 121 CCATCTCTCTCCAATAAGAAAACCCCCAAATCTAACAACCCTAACCCTAAATCTCCGTCT 180
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 141 CCATCTCTCTCCAATAAGAAAACCCCCAAACCT---AACCCTAACCCTAATTCTCCGTCT 197
Query 181 CCGTCACCATCTCCGCCTAAGAAAACCCCCAAATTGAACCCTAACCCTAGTTCTAATCTT 240
||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |
Sbjct 198 CCGTCACCATCTCCGCCTAAGAAAACCCCTAAATTGAATCCTAACCCTAGTTCTGATCCT 257
Query 241 CCTGCTCGTAGTCCTAGCCCTGGTCCTGATACTCCTTCTCCTGTACAGTCCAAGTTTAAG 300
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 258 CCTGCTCGTAGTCCTAGCCCTGGTCCTGCGACGCCTTCTCCTGTACAGTCCAAGTTTAAG 317
Query 301 AAGCCCCTTCTCGTCATCGGACAGACACCTTCGCCTCCTCAATCGGTGGTAATTACTTAC 360
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 318 AAGCCCCTTCTCGTCATCGGACAAACACCTTCGCCTCCTCAATCGGCGGTAATTACTTAC 377
Query 361 GGTGACGAGGTGGTGGGGAAGCAAGTTAGGGTTTATTGGCCTTTGGATAAAAAATGGTAT 420
||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 378 GGTGAGGAGGTGGTGGGGAAGCAAGTTAGGGTTTATTGGCCGTTGGATAAGAAATGGTAT 437
Query 421 GATGGGAGCGTGACGTTTTATGATAAGGGTGAGGGTAAGCATGTGGTTGAGTATGAAGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GATGGGAGCGTGACGTTTTATGATAAGGGTGAGGGTAAGCATGTGGTTGAGTATGAAGAT 497
Query 481 GGGGAAGAAGAGTCTTTGGATTTGGGAAAGGAGAAGACTGAGTGGGTGGTTGGGGAAAAA 540
|||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||
Sbjct 498 GGGGAAGAAGAGTCTTTGGATTTGGGGAAGGAGAAGATTGAGTGGGTGGTCGGGGAAAAA 557
Query 541 TCAGGAGATAGGTTTAATCGATTGAAACGAGGCGCTTCGGCTTTGAGAAAAGTTGTGACG 600
||||||||||||||||| ||||||| |||||||||||| ||| | |||||||||||||||
Sbjct 558 TCAGGAGATAGGTTTAAGCGATTGAGACGAGGCGCTTCAGCTCTCAGAAAAGTTGTGACG 617
Query 601 GATAG-TGATGATGATGTGGAGATGGGTAATGTGG----A-AG--A--AGATAAAAGTGA 650
||| | ||||||||||||||||||||||||||||| | || | ||||||||||||
Sbjct 618 GAT-GATGATGATGATGTGGAGATGGGTAATGTGGAAAAAGAGAAAGGAGATAAAAGTGA 676
Query 651 CGGTGATGATTCTAGCGATGAGGATTGGGGAAAGAATGTTGGGAAGGAGGTTTGTGAGAG 710
||||||||||||||||||||| ||||||||||||||||| |||||| |||| || |||||
Sbjct 677 CGGTGATGATTCTAGCGATGAAGATTGGGGAAAGAATGTGGGGAAGCAGGTATGCGAGAG 736
Query 711 TGAAGAAGATGATGTGGAGTTGGTTGATGAGAATGAAATGGATGAAGAAGAGTTGGTGGA 770
|||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 737 CGAAGAAGACGATGTGGAGTTGGTTGATGAGAATGAGATGGATGAAGATGAGCTGGTGGA 796
Query 771 AGAGAAAGATGAAGAAACTTCTAAAGTTAA-TAGAGTATCCAAAACTGACTCTAGAAAGC 829
||||||||||||||||||| |||||| || || ||| ||||||||||||||||||||||
Sbjct 797 AGAGAAAGATGAAGAAACTCCTAAAG-GAAGTAAAGTTTCCAAAACTGACTCTAGAAAGC 855
Query 830 GGAAGACTAGTGAAGTAACGAAATCAGGTGGTGAGAAGAAAAGCAAGACTGATACAGGCA 889
||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 856 GGAAGACAAGTGAAGTAACGAAATCAGGTGGTGAGAAGAAAAGCAGGACTGATAAAGACA 915
Query 890 CTATCTTGAAAGGTTTTAAGGCTTCTGTTGTGGAGCCTGCGAAGAAGATTGGACAAGCTG 949
|||| ||||||||||||||||||||||||||||||||| | | |||||||||| ||||||
Sbjct 916 CTATTTTGAAAGGTTTTAAGGCTTCTGTTGTGGAGCCTCCTATGAAGATTGGAGAAGCTG 975
Query 950 ATAGGGTGGTCAAGGGTTTGGAAGATAACGTGTTGGATGGGGATGCTCTTGCTAGATTTG 1009
|||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 976 ATAGGGTGGTCAAGAATTTGGAAGATAACATATTGGATGGAGATGCTCTTGCTAGATTTG 1035
Query 1010 GTGCTCGTGATTCTGAGAAATTCCGCTTTTTGGGAGTAGACCGAAGGGATGCTAAAAGGA 1069
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1036 GTGCTCGTGAATCTGAGAAATTCCGCTTCCTGGGAGTAGACCGAAGGGATGCTAAAAGGA 1095
Query 1070 GACGCCCTACTGATGAGAATTATGATCCGAGGACACTCTACCTCCCTCCTGATTTTGTGA 1129
|||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||
Sbjct 1096 GACGCCCTACTGATGAGAATTATGATCCAAGGACACTATACCTTCCGCCTGATTTTGTGA 1155
Query 1130 AAAAATTAACTGGAGGCCAGAGACAATGGTGGGAGTTTAAAGCAAAGCATATGGACAAAG 1189
|||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1156 AAAAATTAACAGGGGGCCAGAGACAATGGTGGGAGTTTAAATCAAAGCATATGGACAAAG 1215
Query 1190 TTGTATTCTTCAAGATGGGTAAATTCTATGAGCTTTTTGAGATGGATGCACATGTCGGAG 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1216 TTGTATTCTTCAAGATGGGTAAATTCTATGAGCTTTTTGAGATGGATGCACATGTAGGAG 1275
Query 1250 CTAAGGAACTGGATATACAATACATGAAGGGAGAGCAACCTCATTGTGGATTTCCGGAGA 1309
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1276 CTAAGGAACTGGATATACAGTACATGAAGGGAGAACAACCTCATTGTGGATTTCCGGAGA 1335
Query 1310 AGAATTTTTCTGTAAACATTGAGAAATTAGTTAGAAAGGGCTATCGGGTTTTAGTTGTCG 1369
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1336 AGAATTTCTCTGTAAACATTGAGAAATTAGTTAGAAAGGGCTATCGGGTTTTAGTTGTGG 1395
Query 1370 AACAAACAGAAACACCTGATCAGCTGGAGCAACGCCGAAAAGAGACAGGTTCCAAGGATA 1429
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1396 AGCAAACAGAAACACCTGATCAGCTGGAGCAACGCCGGAAAGAGACAGGCTCCAAGGATA 1455
Query 1430 AAGTTGTGAAGCGCGAAGTATGTGCAGTTGTTACAAAAGGCACGCTGACAGATGGGGAGA 1489
||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1456 AAGTTGTGAAGCGCGAAATATGTGCAGTTGTTACGAAAGGAACGCTGACAGATGGGGAGA 1515
Query 1490 TGCTATTAACTAATCCGGATGCATCTTATCTAATGGCCTTGACTGAAGGAGGAGAAAGTT 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 TGCTATTAACTAATCCGGATGCATCTTATCTAATGGCCTTGACTGAAGGAGGAGAAAGTT 1575
Query 1550 TAACTAATCCTACAGCAGAGCACAATTTTGGTGTATGTTTGGTTGATGTTGCGACACAGA 1609
||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1576 TAACTGATCAGACAGCAGAGCACAATTTTGGTGTCTGTTTGGTTGATGTTGCGACAAAGA 1635
Query 1610 AGATAATACTGGGCCAGTTTAAGGATGATCAAGATTGCAGTGCATTATCTTGCCTGCTAT 1669
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1636 AGATAATGCTGGGCCAGTTCAAGGATGATCAAGACTGCAGTGCATTATCTTGCCTGCTAT 1695
Query 1670 CTGAGATGAGGCCGGTGGAAATTATTAAACCAGCTAAGGTGTTGAGTTATGCAACAGAGA 1729
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1696 CTGAGATGAGGCCGGTGGAAATTATTAAACCAGCTAAGGTGTTGAGTTCTGCAACAGAGA 1755
Query 1730 GAACAATAGTTAGACAAACCAGAAATCCCTTAGTAAATAATCTCGTTCCACTTTCTGAAT 1789
|||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||
Sbjct 1756 GAACAATAGTTAGACAAACCCGAAATCCCTTAGTAAATAATCTGGTCCCACTTTCTGAAT 1815
Query 1790 TTTGGGATTCGGAGAAGACCATATATGAAGTTGGAATTATCTACAAGCGAATCAATTGTC 1849
|||||||||| |||||||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 1816 TTTGGGATTCAGAGAAGACCATACATGAAGTTGGAATTTTCTACAAGCGAATCAGTTGTC 1875
Query 1850 AACCGTCTTCTGCTTATTCTAGTGAGGGAAAGATTCTAGGTGATGGTTCAAGCTTTCTTC 1909
||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||
Sbjct 1876 AACCGTCTTCTGCTTATTCTAGTGAAGGAAAGATTCCAGGTGATGGTTCAAGCTTCCTTC 1935
Query 1910 CAAAAATGTTGTCTGAATTAGCAACTGAAGATAAGAATGGTAGCCTGGCACTCTCTGCTC 1969
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1936 CAAAAATGTTGTCTGAATTAGCAACTGAAGATAAGAATGGTAGCCTAGCACTCTCTGCTC 1995
Query 1970 TTGGTGGTGCCATTTACTACCTGCGACAAGCATTCTTGGATGAGAGTCTGCTTAGATTTG 2029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1996 TTGGTGGTGCCATTTACTACCTGCGACAAGCATTCTTGGATGAGAGTCTGCTTAGATTTG 2055
Query 2030 CAAAGTTTGAATCCCTGCCTTACTGTGATTTCAGCAACGTTAATGAGAAGCAGCACATGG 2089
| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 2056 CCAAGTTTGAATCCCTGCCTTGCTGTGATTTCAGCAACGTTAATGAGAAACAGCACATGG 2115
Query 2090 TTCTTGATGCTGCTGCTCTTGAAAACCTTGAGATATTTGAAAACAGTAGAAATGGAGGCT 2149
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2116 TTCTTGATGCTGCTGCTCTTGAAAACCTTGAAATATTTGAAAACAGTAGAAATGGAGGCT 2175
Query 2150 ATTCAGGAACGCTGTATGCTCAACTGAATCAATGTATCACTGCATCTGGGAAACGGTTAC 2209
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2176 ATTCGGGAACGCTGTATGCTCAACTGAATCAATGTGTCACTGCATCTGGGAAACGGTTAC 2235
Query 2210 TGAAAACATGGCTGGCAAGACCTTTATATAATACGGAACTGATCAAGGAACGACAAGATG 2269
| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2236 TTAAAACATGGCTGGCGAGACCTTTATATAATCCGAAACTGATCAAGGAACGACAAGATG 2295
Query 2270 CTGTAGCAATTCTGCGGGGTGAAAATCTTCCGTACTCACTGGAATTCCGGAAGTCGTTGT 2329
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 2296 CTGTAGCAATTCTGCGGGGTGAAAATCTTCCGTACTCACTGGAATTTCGGAAGGCGTTGT 2355
Query 2330 CCAGACTTCCAGACATGGAACGGTTGATTGCACGTATGTTTTCTAGCATTGAAGCTAGTG 2389
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2356 CCAGACTTCCGGACATGGAACGGTTGATTGCACGTATGTTTTCTAGCATTGAAGCTAGTG 2415
Query 2390 GAAGAAATGGCGATAAAGTGGTGCTATATGAAGATACAGCTAAGAAGCAGGTACAGGAAT 2449
||||||||||||||||||||||| ||||||||||||| || |||||||||||||| ||||
Sbjct 2416 GAAGAAATGGCGATAAAGTGGTGTTATATGAAGATACGGCAAAGAAGCAGGTACAAGAAT 2475
Query 2450 TCATATCAACTCTACGTGGTTGTGAAACAATGGCAGAAGCATGCTCTTCTCTCCGTGCTA 2509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2476 TCATATCAACTCTACGTGGTTGTGAAACAATGGCAGAAGCATGCTCTTCTCTCCGTGCTA 2535
Query 2510 TCTTGAAGCATGATACATCCAGGCGGCTGCTTCATTTACTAACTCCTGGTCAAAGTCTTC 2569
|||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 2536 TCTTGAAGCACGATAAATCCAGGCGGCTGTTTCATTTACTAACTCCTGGTCAAATTCTTC 2595
Query 2570 CAAATATATCATCCTCCATAAAGTATTTCAAGGATGCTTTTGACTGGGTAGAAGCTCACA 2629
| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2596 CGAACATATCTTCCTCCATTAAGTATTTCAAGGATGCTTTTGACTGGGTAGAAGCTCACA 2655
Query 2630 ATTCTGGACGTGTAATACCCCATGAAGGAGCAGATGAAGAGTATGATTGTGCCTGCAAAA 2689
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2656 ATTCTGGTCGTGTAATACCCCATGAAGGAGCTGATGAAGAGTATGATTGTGCCTGCAAAA 2715
Query 2690 CAGTAGAAGAATTTGAGTCCAGTTTGAAAAAACATCTGAAAGAGCAACGGAAATTACTCG 2749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2716 CAGTAGAAGAATTTGAGTCCAGTTTGAAAAAACATCTGAAAGAGCAACGGAAATTACTCG 2775
Query 2750 GAGATGCATCAATAAACTATGTTACAGTTGGAAAAGATGAATACCTCTTGGAAGTTCCTG 2809
||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2776 GAGATCCATCTATAAACTATGTTACTGTTGGAAAAGATGAATACCTCTTGGAAGTTCCTG 2835
Query 2810 AAAGTTTAAGTGGGAGTGTTCCTCATGATTATGAATTATGCTCATCGAAAAAGGGTGTCT 2869
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2836 AAATTTTAAGTGGGAGTGTTCCTCGTGATTATGAATTATGCTCATCGAAAAAGGGTGTCT 2895
Query 2870 CTCGATATTGGACTCCTACCATAAAGAAATTATTAAAAGAGCTATCACAAGCAAAATCTG 2929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2896 CTCGATATTGGACTCCTACCATAAAGAAATTATTAAAAGAGCTATCACAAGCAAAATCTG 2955
Query 2930 AAAAAGAGTCGGCCCTGAAGAGCATTTCACAGAGATTGATTGGACGTTTCTGCGAGCATC 2989
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2956 AAAAAGAGTCGGCTCTGAAGAGCATTTCACAGAGATTGATTGGACGTTTCTGTGAGCATC 3015
Query 2990 AAGAAAAATGGAGACAATTGGTTTCTGCAACAGCTGAGCTGGACGTGTTGATCAGCCTCG 3049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3016 AAGAAAAATGGAGACAATTGGTTTCTGCAACAGCTGAGCTGGACGTGTTGATCAGCCTCG 3075
Query 3050 CTTTTGCAAGTGATTCTTATGAAGGAGTAAGATGCCGCCCAGTAATATCTGGTTCTACAT 3109
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3076 CTTTTGCAAGTGATTCTTATGAAGGAGTAAGATGCCGCCCAGTAATATCAGGTTCTACAT 3135
Query 3110 CTGATGGTGTTCCACACTTGTCTGCCACTGGTCTAGGGCATCCAGTTCTAAGGGGTGATT 3169
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3136 CTGATGATGTTCCACACTTGTCTGCCACTGGTCTAGGGCATCCAGTTCTAAGGGGTGATA 3195
Query 3170 CGT-TAGGCAGAGGCTCTTTTGTACCAAATAATGTAAAGATAGGTGGTGCTGAGAAAGCC 3228
| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3196 C-TCTAGGCAGAGGTTCTTTTGTACCAAATAATGTAAAGATAGGTGGTGCTGAGAAAGCC 3254
Query 3229 AGTTTCATCCTCCTCACAGGCCCTAATATGGGTGGAAAATCAACCCTTCTTCGCCAAGTT 3288
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3255 AGTTTCATCCTCCTCACAGGCCCTAATATGGGTGGAAAATCAACCCTACTTCGCCAAGTT 3314
Query 3289 TGCTTGGCTGTAATCTTGGCTCAGATTGGAGCAGATGTCCCAGCAGAAACCTTTGAGGTT 3348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3315 TGCTTGGCTGTAATCTTGGCTCAGATTGGAGCAGATGTCCCAGCAGAAACCTTTGAGGTT 3374
Query 3349 TCGCCTGTTGACAAAATTTGTGTCCGGATGGGTGCAAAAGATCATATCATGGCAGGACAA 3408
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3375 TCGCCTGTTGACAGAATTTGTGTCCGGATGGGTGCAAAAGATCATATTATGGCAGGACAA 3434
Query 3409 AGCACGTTTTTAACAGAACTTTCAGAAACTGCGGTAATGTTGACATCAGCCACCCGAAAC 3468
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3435 AGCACGTTCTTAACAGAACTTTCAGAAACTGCGGTAATGTTGACATCAGCTACCCGAAAC 3494
Query 3469 TCGCTGGTGGTGCTAGATGAGCTTGGACGAGGAACAGCCACATCAGATGGGCAAGCCATT 3528
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3495 TCTCTGGTGGTACTAGATGAGCTTGGACGAGGAACAGCCACATCAGATGGACAAGCCATT 3554
Query 3529 GCGGAATCCGTACTTGAGCACTTCATAGAAAAGGTGCAGTGTAGAGGATTCTTCTCTACT 3588
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 3555 GCGGAATCCGTACTTGAGCACTTCATAGACAAGGTGCAGTGTAGAGGATTGTTCTCTACT 3614
Query 3589 CATTATCATCGTCTCTCTGTGGATTATCAAACCAATCCAAAGGTCTCACTTTGCCATATG 3648
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3615 CATTATCATCGTCTATCTGTGGATTATCAAACCAATCCAAAGGTCTCACTTTGCCATATG 3674
Query 3649 GCATGTCAAATAGGAGAAGGAATCGGTGGAGTAGAAGAAGTTACATTTCTCTATAGATTG 3708
||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct 3675 GCATGTCAAGTAGGAGAAGGAATTGGTGGAGTAGAAGAAGTGACATTTCTCTATAGACTG 3734
Query 3709 ACTCCTGGTGCATGTCCTAAAAGTTATGGAGTTAACGTTGCTCGGTTAGCTGGTCTTCCA 3768
|| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 3735 ACGCCTGGTGCATGTCCTAAAAGCTATGGAGTTAATGTTGCTCGGCTAGCTGGTCTTCCA 3794
Query 3769 GATTACGTACTCCAGAGAGCCGTGATAAAATCCCAAGAATTCGAGGCTTTGTACGGTAAA 3828
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 3795 GATTACGTACTTCAGAGAGCCGTGATAAAATCCCAAGAATTTGAGGCCTTGTATGGTAAA 3854
Query 3829 AACCATAGAAAAACCGATCATAAATTAGCAGCAATGATAAAGCAGATCATCAGCAGTGTT 3888
|| || |||||||| ||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 3855 AAACAGAGAAAAACTGATCATAAAATGGCAGCAGTGATAAAGCAGATCATCAGCAGTGTT 3914
Query 3889 GCATCAGATTCTGATTACTCAGCTTCAAAGGACTCATTGTGTGAGCTACACTCCATGGCC 3948
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 3915 GCATCAGATTCTGATTACTCAGCTTCAAAAGACTCATTGTCTGAGCTACACTCCATGGCC 3974
Query 3949 AATACATTTCTCCGGTTAACCAACT 3973
||||||||||||||||| |||||||
Sbjct 3975 AATACATTTCTCCGGTTGACCAACT 3999
> Ahg913145 jgi|Araly1|913145|Al_scaffold_0001_3399
Length=726
Score = 265 bits (143), Expect = 2e-69
Identities = 177/193 (92%), Gaps = 3/193 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCCGTCTCGCCGACAGATCAGCGGAAGATCTCCGTTGGTGAACCAGCAGCGTCAA 60
|||||||| || | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCCAACTTGTCGACAGATCAGCGAAAGATCTCCGTTGGTGAACCAGCAGCGTCAA 60
Query 61 ATCACCTCCTTCTTTGGGAAATCTGCTTCATCATCTTCTTCTCCGTCTCCATCTCCTTCA 120
|||||||||||||||||||||| |||||| | | ||||||||| |||||||| ||||||
Sbjct 61 ATCACCTCCTTCTTTGGGAAATATGCTTCCT--T-TTCTTCTCCATCTCCATCACCTTCA 117
Query 121 CCATCTCTCTCCAATAAGAAAACCCCCAAATCTAACAACCCTAACCCTAAATCTCCGTCT 180
||| |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 118 CCACCTCTGTCCAATAAGAAAACCCCCAAATCTATCAACCCTAACCCTAATTCTCCGTCT 177
Query 181 CCGTCACCATCTC 193
|||||||||||||
Sbjct 178 CCGTCACCATCTC 190
> Ahg943306 jgi|Araly1|943306|scaffold_603850.1
Length=494
Score = 261 bits (141), Expect = 3e-68
Identities = 171/185 (92%), Gaps = 3/185 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCCGTCTCGCCGACAGATCAGCGGAAGATCTCCGTTGGTGAACCAGCAGCGTCAA 60
|||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 25 ATGGCTCCATCTTGCCGACAGATCAGCGAAAGATCTCCGTTGGTGAACCAGCAGCGTCAA 84
Query 61 ATCACCTCCTTCTTTGGGAAATCTGCTTCATCATCTTCTTCTCCGTCTCCATCTCCTTCA 120
|||||||||||||||||||||| |||||| | | ||||||||| |||||||| ||||||
Sbjct 85 ATCACCTCCTTCTTTGGGAAATATGCTTCCT--T-TTCTTCTCCATCTCCATCACCTTCA 141
Query 121 CCATCTCTCTCCAATAAGAAAACCCCCAAATCTAACAACCCTAACCCTAAATCTCCGTCT 180
||| |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 142 CCACCTCTGTCCAATAAGAAAACCCCCAAATCTATCAACCCTAACCCTAATTCTCCGTCT 201
Query 181 CCGTC 185
|||||
Sbjct 202 CCGTC 206
> Ahg915788 jgi|Araly1|915788|Al_scaffold_0008_539
Length=735
Score = 255 bits (138), Expect = 1e-66
Identities = 170/185 (92%), Gaps = 3/185 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCCGTCTCGCCGACAGATCAGCGGAAGATCTCCGTTGGTGAACCAGCAGCGTCAA 60
|||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCCATCTTGTCGACAGATCAGCGAAAGATCTCCGTTGGTGAACCAGCAGCGTCAA 60
Query 61 ATCACCTCCTTCTTTGGGAAATCTGCTTCATCATCTTCTTCTCCGTCTCCATCTCCTTCA 120
|||||||||||||||||||||| |||||| | | ||||||||| |||||||| ||||||
Sbjct 61 ATCACCTCCTTCTTTGGGAAATATGCTTCCT--T-TTCTTCTCCATCTCCATCACCTTCA 117
Query 121 CCATCTCTCTCCAATAAGAAAACCCCCAAATCTAACAACCCTAACCCTAAATCTCCGTCT 180
||| |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 118 CCACCTCTGTCCAATAAGAAAACCCCCAAATCTATCAACCCTAACCCTAATTCTCCGTCT 177
Query 181 CCGTC 185
|||||
Sbjct 178 CCGTC 182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150251298204
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5