BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02075.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490373 jgi|Araly1|490373|fgenesh2_kg.6__3507__AT4G02075.1 957 0.0
> Ahg490373 jgi|Araly1|490373|fgenesh2_kg.6__3507__AT4G02075.1
Length=733
Score = 957 bits (518), Expect = 0.0
Identities = 615/660 (93%), Gaps = 14/660 (2%)
Strand=Plus/Plus
Query 61 AGATGGGAGATGTGATTTTGTTCATTGATGATACGAAATCGAAAGTGAGAATCACGCGTT 120
||||||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||
Sbjct 9 AGATGGGAGATGTGATTTTGTTCATCGACGATACGAATTCGAAAGTGAGAATCTCGCGTT 68
Query 121 GCAGAATTTGCCATGAAGAAGAAGAAGAAAGTTTCTTCGAAGTTCCATGTGCTTGTTCAG 180
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 69 GCAGAATTTGTCATGAAGAAGAAGAAGAAAGTTTCTTCGAAGTTCCTTGTGCTTGTTCAG 128
Query 181 GCACCGTTAAGTTCGCACATAGAAACTGCATACAACGTTGGTGTAATGAAAAAGGAAACA 240
||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 129 GCACCGTTAAGTTCGCACACAGAAATTGCATACAACGTTGGTGTGATGAAAAAGGAAACA 188
Query 241 CAACTTGTGAAATCTGTCTTCAGGTGTATAAAGATGGATATACAGCAGTTTTAAAACAAT 300
||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 189 CAACTTGTGAAATCTGTCTTCAGGTTTATAGAGATGGATATACAGCAGTTTCAAAACAAT 248
Query 301 CGAAATTGATTGAACAAGAAGTCACAATCAGAGTAAATGGACgaagaagaagaagaagta 360
| ||||| |||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct 249 CTAAATTCATTGAAGAAGAAGTCATAATCAGAGTAAATGGAC------GAAGAAGAAGTA 302
Query 361 gaagaTTAGTGTCTATAGCTGAATCCGATATT-TCTCAGTGTAATTCTGTTGCTGATAGA 419
||||||||||| ||||||||||||| ||| || ||||||||||||||||||||| |||||
Sbjct 303 GAAGATTAGTGACTATAGCTGAATCAGAT-TTATCTCAGTGTAATTCTGTTGCTAATAGA 361
Query 420 GGAGCTTCGTTTTGCAGATCATTAACTTTTACTCTTTCAGTATTTTTGCTGATGAAACAT 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 362 GGAGCTTCGTTTTGCAGATCATTAACTTTTATTCTTTCAGTATTTTTGCTGATGAAACAT 421
Query 480 ACATTCGATGTGATTTACGGAACCGAAGAATATCCATTCTCTGTATTTACGGTACTAACA 539
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ACATTCGATGTGACTTATGGAACCGAAGAATATCCATTCTCTGTATTTACGGTACTAACA 481
Query 540 TTAAAGGCCATTGGGATACTATTGCCAATGTTCATTATAATTCGAACAATCTCAACTATT 599
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TTAAAGGCCATAGGGATTTTATTGCCAATGTTCATTATAATTCGAACAATCTCAACTATT 541
Query 600 CAGAAAACTCTTCGTCGTCGTCATCAATATCCTGAATCTGAAGAAGAAGATAGGTTGAGC 659
|||||| |||| ||||||| | ||| |||| ||||||||||||||| || |||||||
Sbjct 542 CAGAAATCTCTCCGTCGTC-T--TCAGTATCTTGAATCTGAAGAAGA---TACGTTGAGC 595
Query 660 TCTGACGACGACGATGACTTGGAAGAAGAAGATGAAGAGCAACAACAACATTTGGCTTAA 719
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 596 TCTGACGACGACGATGACTTGGAAGAAGAAGAAGAAGAGCAACAACAACATTTGGCTTAA 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5