BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02080.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943533 jgi|Araly1|943533|scaffold_604077.1 952 0.0
Ahg918912 jgi|Araly1|918912|scaffold_100193.1 630 4e-180
> Ahg943533 jgi|Araly1|943533|scaffold_604077.1
Length=622
Score = 952 bits (515), Expect = 0.0
Identities = 583/616 (95%), Gaps = 4/616 (1%)
Strand=Plus/Plus
Query 86 GGATCTGAGT--T-AGTCATGTTCATGATCGATTGGTTCTATGGCGTTCTCGCTTCGTTA 142
|||||||||| | ||| |||||| || | ||||||||||||||||| ||||||||||||
Sbjct 3 GGATCTGAGTAGTGAGTGATGTTCTTGGTAGATTGGTTCTATGGCGTACTCGCTTCGTTA 62
Query 143 GGGTTATGGCAGAAAGAGGCTAAGATCTTGTTTCTGGGACTCGATAATGCTGGTAAAACC 202
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 63 GGGTTATGGCAGAAAGAGGCTAAGATCTTGTTTCTTGGACTCGATAATGCTGGTAAAACC 122
Query 203 ACTCTGCTTCACATGTTGAAAGACGAGAGATTGGTACAGCATCAGCCTACGCAGCATCCA 262
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 123 ACTTTGCTTCACATGTTGAAAGACGAGAGATTGGTACAGCATCAGCCAACGCAGCATCCA 182
Query 263 ACTTCTGAAGAACTCAGCATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGTGGTCAC 322
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 ACGTCTGAAGAACTTAGCATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGTGGTCAT 242
Query 323 CAGATTGCTCGCAGGGTCTGGAAGGATTACTATGCTAAGGTGGACGCTGTGGTCTACCTA 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CAGATTGCTCGCAGGGTCTGGAAGGATTACTATGCTAAGGTGGACGCTGTGGTCTACCTA 302
Query 383 GTTGATGCTTACGACAAAGAGAGATTTGCAGAATCAAAAAAGGAACTTGATGCACTTCTC 442
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 303 GTAGATGCTTATGACAAAGAGAGATTTGCAGAATCAAAAAAGGAACTTGACGCACTTCTC 362
Query 443 TCAGACGAATCCCTAGCCAGCGTTCCATTCCTCATTCTAGGAAACAAGATAGACATACCG 502
||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||
Sbjct 363 TCAGACGAATCCCTAGCCAACGTCCCATTCCTCATTCTAGGAAACAAAATAGACATACCT 422
Query 503 TATGCTGCATCAGAGGACGAGCTCCGTTACCATCTCGGCCTCTCCAACTTCACTACAGGA 562
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 423 TACGCTGCATCAGAAGACGAGCTCCGTTACCATCTCGGACTCTCCAACTTCACAACAGGA 482
Query 563 AAGGGTAAAGTGAATCTAACGGATTCGAACGTTAGGCCATTGGAGGTTTTCATGTGCAGC 622
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 483 AAGGGTAAAGTGAATCTAACGGATTCGAACGTAAGGCCATTGGAGGTTTTCATGTGCAGC 542
Query 623 ATTGTCAGGAAAATGGGTTACGGAGAAGGTTTCAAATGGGTTTCTCAATACATCAAGTAA 682
|||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||
Sbjct 543 ATTGTCAGGAAAATGGGTTATGGCGAAGGCTTCAAATGGCTTTCTCAATACATCAAGTAA 602
Query 683 GACAAACACACGCTGT 698
||| | |||| |||||
Sbjct 603 GACGA-CACAAGCTGT 617
> Ahg918912 jgi|Araly1|918912|scaffold_100193.1
Length=622
Score = 630 bits (341), Expect = 4e-180
Identities = 503/582 (86%), Gaps = 8/582 (1%)
Strand=Plus/Plus
Query 101 ATGTTCATGATCGATTGGTTCTATGGCGTTCTCGCTTCGTTAGGGTTATGGCAGAAAGAG 160
|||||| || | ||||||||||| ||||| ||||||||| |||| ||||||||||||||
Sbjct 21 ATGTTCTTGGTAGATTGGTTCTACGGCGTGCTCGCTTCGCTAGGTTTATGGCAGAAAGAA 80
Query 161 GCTAAGATCTTGTTTCTGGGACTCGATAATGCTGGTAAAACCA-CTCTGCTTCACATGTT 219
|| |||||||||||||| || ||||||||||| |||||||||| || |||||||||||||
Sbjct 81 GCCAAGATCTTGTTTCTAGGTCTCGATAATGCCGGTAAAACCACCT-TGCTTCACATGTT 139
Query 220 GAAAGACGAGAGATTGGTACAGCATCAGCCTACGCAGCATCCAACTTCTGAAGAACTCAG 279
|||||||||||||||||| |||||||| || || ||||||||||| |||||||| || ||
Sbjct 140 GAAAGACGAGAGATTGGTGCAGCATCAACCAACTCAGCATCCAACCTCTGAAGAGCTTAG 199
Query 280 CATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGTGGTCACCAGATTGCTCGCAGGGT 339
|||||| |||||||| || ||||||||||| ||||| ||||| || ||||| || || ||
Sbjct 200 CATTGGCAAAATCAAATTCAAGGCTTTTGACTTGGGCGGTCATCAAATTGCACGAAGAGT 259
Query 340 CTGGAAGGATTACTATGCTAAGGTGGACGCTGTGGTCTACCTAGTTGATGCTTACGACAA 399
||||| || |||||||||||||| || || ||||||||| |||| |||||||| |||||
Sbjct 260 GTGGAAAGACTACTATGCTAAGGTTGATGCGGTGGTCTACTTAGTGGATGCTTATGACAA 319
Query 400 AGAGAGATTTGCAGAATCAAAAAAGGAACTTGATGCACTTCTCTCAGACGAATCCCTAGC 459
|||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct 320 GGAGAGATTTGCAGAATCAAAAAAGGAGCTTGATGCACTTCTCTCAGATGAATCCTTAGC 379
Query 460 CAGC-GTTCCATTCCTCATTCTAGGAAACAAGATAGACATACCGTATGCTGCATCAGAGG 518
|| | || ||||||||||| ||||| ||||| || |||||||| || |||||||| ||||
Sbjct 380 CA-CTGTCCCATTCCTCATCCTAGGGAACAAAATCGACATACCTTACGCTGCATCTGAGG 438
Query 519 ACGAGCTCCGTTACCATCTCGGCCTCTCCAACTTCACTACAGG-AAAGGGTAAAGTGAAT 577
||||||| || |||||||| || |||||||| ||||| || || ||||| |||||||||
Sbjct 439 ACGAGCTTCGATACCATCTTGGTCTCTCCAATTTCACAACTGGTAAAGGC-AAAGTGAAT 497
Query 578 CTAACGGATTCGAACGTTAGGCCATTGGAGGT-TTTCATGTGCAGCATTGTCAGGAAAAT 636
||||| |||||||| || || ||||||||||| ||| |||||||||||||| || |||||
Sbjct 498 CTAACTGATTCGAATGTGAGACCATTGGAGGTGTTT-ATGTGCAGCATTGTTAGAAAAAT 556
Query 637 GGGTTACGGAGAAGGTTTCAAATGGGTTTCTCAATACATCAA 678
||| || || ||||| ||||| ||| | ||||||||||||||
Sbjct 557 GGGATATGGTGAAGGCTTCAAGTGGCTCTCTCAATACATCAA 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5