BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02090.1
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490371 jgi|Araly1|490371|fgenesh2_kg.6__3505__AT4G02090.1 1109 0.0
> Ahg490371 jgi|Araly1|490371|fgenesh2_kg.6__3505__AT4G02090.1
Length=797
Score = 1109 bits (600), Expect = 0.0
Identities = 742/807 (92%), Gaps = 24/807 (3%)
Strand=Plus/Plus
Query 2 TAGGATCACTGTGATCTGAGAATGGGTAACGTTGCTGGTTCCCGAAAGTTGGATGCGGCC 61
||||| || | ||||||||||||||||||||| || ||||||||||| ||| |||||||
Sbjct 1 TAGGAGCATTCTGATCTGAGAATGGGTAACGTAGCCGGTTCCCGAAAATTGAATGCGGCA 60
Query 62 GGGATGGCTGCCGGAAAAGTTGTATTATCCGACGGAAGGGTACAAAACTTAGAGGAAGAG 121
||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 61 TCGATGGCTGCTAGAAAAGTTGTGTTATCCGACGGAAGAGTACAAAACTTAGAGGAAGAG 120
Query 122 ACAACGGTGGCTGAGATTATGCTAGAAAATCCGCAACATGTGGTCGTCGAATTTGATCCG 181
|| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 121 ACGACGGTGGCTGAGATTATGCTGGAAAATCCGCAACACGTGGTTGTCGAATTTGATCCG 180
Query 182 TCATCGATATCATTCAACAACGACGCAAAAACGGTGAAG-AGAAAGCTGGCTCCTTTGCC 240
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 181 TCATCGATATCATTCAACAACGACGCAAAAACGGTGAAGAAG-AAGCTGGCTCCTTTGCC 239
Query 241 CGCGGACAAAACACTCGAGCCAGGGAAAATCTATTTAGTGCTTCCCGCCAAAAGAAGCGG 300
||| || ||||| |||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 240 CGCTGATAAAACTCTCGAGCCGGGGAAAATCTATTTGGTGCTTCCCGCCAAAAGAAGCAG 299
Query 301 TGGCAGGGCCG-CAAA--ATCAT---CATCGGCGGTGCTGACGTCAGAGGAGATGCGGAA 354
|||||| || | |||| ||||| ||||||||||||| |||||||||||| |||||||
Sbjct 300 TGGCAGCGCAGCCAAATCATCATCAGCATCGGCGGTGCTCACGTCAGAGGAGTTGCGGAA 359
Query 355 AATGCTGTTTAGCGCCACGGCAATGGTAAGGTCATCGTTTAGCTACTATGAAGGGATTCT 414
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 AATGCTATTTAGCGCCACGGCAATGGTAAGGTCATCGTTTAGCTACTATGAAGGGATACT 419
Query 415 TCCTTGGTTTACTACTAGAAGTTATAAGAACAACAATCCGGCGACTGATACGGTCGTTGC 474
||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |||||
Sbjct 420 TCCTTGGTTTACTACTAGAAGTTATAAGAACAATATTCCGGCGACTGATGCGGTGGTTGC 479
Query 475 TGCTACGTCGGTTGGAAGATTGGAGGCAGAGATGGAGGAGGAAGATAGGCCGGAGTTTTT 534
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TGCTACGTCAGTTGGAAGATTGGAGGCAGAGATGGAGGAGGAAGAGAGGCCGGAGTTTTT 539
Query 535 GAGCCGGCAATTGTCGGGAAGAGGGTGGAAACCAAGCTTGGATCCTATCAGAGAGAAGAA 594
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 GAGCCGGCAATTGTCGGGAAGAGGGTGGAAACCAAGCTTGGATCCTATCAAAGAGAAGAA 599
Query 595 AGCAAAGAAGAAAATCCATCAACGGTTCTTGTTATAAATACGTTGTCGTTT-GGTTTAAA 653
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 600 AGCAAAGAAGAAAATCCATCAACGGTTCTTGTTATAAATACGATGTCGTTTTGGTA-AAA 658
Query 654 TCCTTTTCTAAATGATCTTGT---ATT--T-TGTGTTTTGTGCTAAATTGTGTGTATTGT 707
|||||||||||||||| |||| ||| | |||||||||||||||||||||||||
Sbjct 659 TCCTTTTCTAAATGATTTTGTTGTATTGGTGTGTGTTTTGTGCTAAATTGTGTGTA---- 714
Query 708 GTAAAGATCGTTTCTTAACGTGCGTATGTGTCTTGTACGCCGGTCACGAGAAACTCACGT 767
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 --A--GATCGTTTCTTAACGTGCGTATGTGTCTTGTACGCCGGTCACGAGAAACTCACGT 770
Query 768 GAATTCCAAAACCTCTGTTTCATTCGT 794
||||||||||||||||||||| |||||
Sbjct 771 GAATTCCAAAACCTCTGTTTCGTTCGT 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30193350264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5