BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02100.1
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490370 jgi|Araly1|490370|fgenesh2_kg.6__3504__AT4G02100.1 2885 0.0
> Ahg490370 jgi|Araly1|490370|fgenesh2_kg.6__3504__AT4G02100.1
Length=2008
Score = 2885 bits (1562), Expect = 0.0
Identities = 1910/2065 (92%), Gaps = 75/2065 (4%)
Strand=Plus/Plus
Query 1 ATGATTTTTCAAAAtctctctcttctctcgtgttttcgacttttcctctctctctTATAT 60
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 1 ATGATTTTTCAAAATCTCTCTCTTCTCTCGTGTTTTCGACTTTT-C-CTCTCTC--ATAT 56
Query 61 AAATTATATATTTTGCTTTGGtttttttt--tttCACCGGATCGATCGAGAAGAGAGAAA 118
|| ||| ||| | ||| |||||||| ||| || | |||||||||||||||||
Sbjct 57 ---TT-TAT-TTTAG-TTT--TTTTTTTTAATTT--CC-G---GATCGAGAAGAGAGAAA 102
Query 119 AGTTCATCTTCTTCTTGTTCTGATTGTTTGACAAGTTTTACGACAATGGCGGTTTACGGC 178
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 103 AGTTCTTCTTCTTCTTGTTCTGATTGTTTCACAAGTTTTACGACAATGGCGGTTTACGGA 162
Query 179 GAGAAGAAGCATTGGTGGCTCCGCAACAAGAAGATCGTTGATAAATACATGAAAGAAGCA 238
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 163 GAGAAGAAGCATTGGTGGCTCCGCAACAAGAAGATCGTTGATAAGTACATGAAAGAAGCA 222
Query 239 AAGAGTTTAATAGCGAGTCAAGATCCAAACGACGTGAAATCAGCTCTAAATCTTCTGGAA 298
|||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 223 AAGAATTTAATAGCGAGTCAAGATCCAAACGACGTTAAATCTGCTCTGAATCTTCTGGAA 282
Query 299 TCTGCACTCTCTGTATCTCCTCGTTACGAACTCGCTCTCGAACTCAAAGCCAGATCCCTT 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 283 TCTGCACTCTCTGTATCTCCTCGTTACGAACTCGCTCTCGAACTCAAAGCCAGATCGCTT 342
Query 359 CTTTACCTCCGTCGATACAAAGACGTCGCCGATATGCTTCAGGATTACATTCCTAGTCTT 418
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 343 CTTTACCTCCGTCGATTCAAAGACGTCGCCGATATGCTTCAGGATTACATTCCTAGCCTT 402
Query 419 AAATTAGCCGGCGGCGGCGAAGATTCCGGTATCGGTTCATCTGAGCTTTCTTTTACTCAT 478
||| || || ||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 403 AAACTA----GC--CGGCGAAGATTCCGGCATCGGTTCATCGGAGCTTTCTGTTACTCAT 456
Query 479 TCTTCTCGTGAATCTGTCAAACTTCTCAACGATTTGCCTAGTCATCATCATCATCATGAC 538
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 457 TCTTCTCGTGAATCTGTCAAACTTCTCAACGATTTGCC--G--A--GTCATCATCATGAC 510
Query 539 TCGTCTTTTAAATGCTTCTCTGTCTCTGATTTGAAGAAGAAAGTCATGGCTGGTCTCACT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 511 TCGTCTTTTAAATGCTTCTCTGTCTCTGATTTGAAGAAGAAAGTCATGGCTGGTCTCAGT 570
Query 599 AAAAACTGCGACGAACAAGGGCAATGGAGATATTTGGTTTTGGGTCAAGCTTGTTGCCAT 658
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 571 AAAAACTGCGACGAACAAGGGCAATGGAGATATTTGGTTTTAGGTCAAGCTTGTTGCCAT 630
Query 659 TTAGGTTTAATGGAGGATGCAATGGTTCTTCTTCAAACCGGTAAACGCTTAGCCACCGCT 718
|||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TTAGGTCTAATGGAAGACGCAATGGTTCTTCTTCAAACCGGTAAACGCTTAGCCACCGCC 690
Query 719 GCGTTCCGCCGTCAGAGTATTTGTTGGTCTGACGATAGCTTCATTCTCTTCTCCTCCGAA 778
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 691 GCGTTCCGCCGTCAGAGCATTTGCTGGTCTGACGATAGCTTCATTCTCTTCTCCTCCGAA 750
Query 779 GACGGCGGCTCCTCTCCTCCCTCCTCCGTCGTCGTAACTTCCGCATCTCAGCCACGATCC 838
|||||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 751 GACGGCGGTTCCTCTCCTCCCACCCCCGTCGTCGTAACTTCCGGATCTCAGCCACGATCC 810
Query 839 GAGAGCATCGCTCACGTGTTATCTCACATCAAGCTACTCTTAAGACGGCGCGCCGCCGCA 898
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 811 GAGAGCATCGCTCACGTGTTATCTCACATCAAGCTACTCTTACGACGACGCGCCGCCGCA 870
Query 899 CTCGCCGCTCTCGACGCAGGACTCTACACAGAATCGATTCGCCATTTCTCAAAAATCTTA 958
|||||||||||||||||||| |||||| ||||||| ||||| ||||||||||||||||||
Sbjct 871 CTCGCCGCTCTCGACGCAGGGCTCTACTCAGAATCAATTCGACATTTCTCAAAAATCTTA 930
Query 959 GACAGTCGCCGTGGCGCGCCGCAGGGATTTCTCGCCCAGTGCTTTATGCACCGCGCCTCC 1018
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 931 GACAGCCGCCGTGGCGCGCCGCAGGCATTTCTCGCCCAGTGCTTTATGCACCGCGCATCA 990
Query 1019 GCTTACAGATCCGCCGGAAGAATCGCGGAATCAATCGCCGACTGTAACAAAACCCTAGCG 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 GCTTACAGATCCGCCGGAAGAATCGCGGAATCAATCGCCGACTGTAACAAAACCCTAGCC 1050
Query 1079 TTAGATCCGTCGTGTCTCCAAGCTTTAGAAACGAGAGCCGCATTGTTAGAATCCGTTCGG 1138
||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1051 TTAGATCCGTCATGTCTCCAAGCTTTAGAAACCAGAGCCGCATTGCTAGAATCCGTTCGG 1110
Query 1139 TGCTTCCCCGATTCGCTTCACGATTTGGAACATCTGAAACTCCTCTACAACTCCATCTTA 1198
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGTTTCCCCGATTCGCTTCACGATTTGGAACATCTGAAACTCCTCTACAACTCCATCTTA 1170
Query 1199 CGTGACCGGAAACTACCCGGTCCGGTTTGGAAACGGCACAATGTCCGGTACAGAGAAATA 1258
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1171 CGTGACCGGAAACTACCCGGTCCGGTTTGGAAACGGCACAACGTCCGGTACAGAGAAATA 1230
Query 1259 CCGGGGAAATTATGCGTCTTAACCACGAAAATCCAGCAATTGAAGCA-GAAAATCGCAAA 1317
||||| ||||||||||| || ||| |||| ||||||||||||||| | ||||||||||||
Sbjct 1231 CCGGGAAAATTATGCGTTTTGACCTCGAAGATCCAGCAATTGAAG-ACGAAAATCGCAAA 1289
Query 1318 CGGAGAAATCGGAAACGTGGATTACTATGCTCTGATGGGAATCAGACGTGATTGCTCGAG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 CGGAGAAATCGGAAACGTGGATTACTATGCTCTGATGGGAATCAGACGTGATTGCTCGAG 1349
Query 1378 ATCAGAGCTGGATCGAGCTTACTTGTTACTCAATTTAAAGCATAAACCGGAGAGATCAAT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 ATCAGAGCTGGATCGAGCTTACTTGTTACTCAATTTAAAGCATAAACCGGAGAGATCAAT 1409
Query 1438 GTCATTTATTGACCGGTTTGAGTTAACCGATGATGAGGAAGAATTAGACTCGGTTAAGGA 1497
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1410 GTCATTCATTGACCGGTTTGAGCTAACCGATGATGAGGAAGAATTAGACTCGGTTAAGGA 1469
Query 1498 CCGAGCAAGAATGTCAACTCTATTACTATACAGATTGATCCAGAAAGGCTACTCAGTCGT 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 CCGAGCAAGAATGTCAACTCTATTACTATACAGATTGATCCAGAAAGGCTACTCAGTCGT 1529
Query 1558 CACAAGTAACATCGCAGCCGTGGAG-AAGCAACGAA-AAGCCATCGCC--GCCGCAGTAG 1613
||||||||||||||| | | | || |||| || | |||| | || |||| | ||
Sbjct 1530 GACAAGTAACATCGCAAC-G-G-AGCAAGCCGCGGAGAAGCAA-CGAAAAGCCGTGGCAG 1585
Query 1614 CGACTGAATCTCATCGGAGTAATATCATCGAAACGCCGATTAGAGCGGTCGCGGTTGCTG 1673
|| ||| ||||||||||||||| ||||||||||||| | ||||||||||||||||| |
Sbjct 1586 CG---GAAACTCATCGGAGTAATAACATCGAAACGCCGGTCAGAGCGGTCGCGGTTGCGG 1642
Query 1674 TGAACAGTAATA--AC-AATA-C-----GAATGTGGTGAAAGGAGTGTTTTGTAGAGATT 1724
|||||||||||| || |||| | ||||||||||||||||||||||||||||||||
Sbjct 1643 TGAACAGTAATAGTACTAATAACAATACGAATGTGGTGAAAGGAGTGTTTTGTAGAGATT 1702
Query 1725 TGACGGTGGTTGGGAGTTTGATTGCGCGGACCGGGTTTAACCAACCGATTCCGGTTAAAT 1784
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1703 TGACAGTGGTTGGGAGTTTGATTGCACGGACCGGGTTTAATCAACCGATTCCGGTTAAAT 1762
Query 1785 ACGAAGCGCTTAGTTGCTGAATTTGATTGACCGTGTGAAGGTGTTTCTCTGCGTTTTGTA 1844
||||||||||||||||||||| ||| ||||||||| || ||||||||||
Sbjct 1763 ACGAAGCGCTTAGTTGCTGAAATTGTTTGACCGTG-----------CT--GCGTTTTGTA 1809
Query 1845 CAAAAGAAAAGACAGATCATCATCATCACTATTCGCATTGGATGAAATTATGGATATTAA 1904
|||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |||
Sbjct 1810 CAAAAGAAAAGACAGA--A-CATCATCACTATTCACATTGGATGAAATTATGGATAATAA 1866
Query 1905 GAATATATTGTCTGCCCGAGAATTTTGGAGCTTTCTCTCTTGTTTGTTTCTTCTTTATTC 1964
||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1867 TAATAT-T-GTCTGCCCGAGAATTTTGGAGCTTTCTCTCTTGTTTCTTTCTTCTTTATTC 1924
Query 1965 TTCACTATGCCTAAACGACAAAACCCAAAATAAAAAG-TGAACCATAATATTATGAAATA 2023
|||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| |
Sbjct 1925 TTCACTATGCCTAAACGACAAAACCCAAAAAAAAAAGGTGATCCATAATATTATGAAAAA 1984
Query 2024 -TTTACATCACTATTCACATTTGTG 2047
||| ||||||||||||||||||||
Sbjct 1985 GTTT-CATCACTATTCACATTTGTG 2008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78427814455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5