BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02120.1
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943524 jgi|Araly1|943524|scaffold_604068.1 2835 0.0
Ahg352427 jgi|Araly1|352427|fgenesh1_pg.C_scaffold_6003020 586 2e-166
> Ahg943524 jgi|Araly1|943524|scaffold_604068.1
Length=1714
Score = 2835 bits (1535), Expect = 0.0
Identities = 1644/1698 (97%), Gaps = 2/1698 (0%)
Strand=Plus/Plus
Query 93 GAGATGAAGTACGTATTGGTGACTGGAGGAGTGGTGAGTGGGCTTGGCAAAGGCGTTACG 152
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 18 GAGATGAAGTACGTATTGGTGACTGGAGGAGTGGTTAGTGGGCTTGGCAAAGGCGTTACC 77
Query 153 GCGAGTAGTATCGGCGTGGTGCTTAAAGCTTGTGGCCTTGGAGTTACCTCCATTAAAATT 212
|| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 78 GCCAGTAGTATCGGCGTCGTGCTTAAAGCTTGTGGCCTTCGAGTTACCTCCATTAAAATT 137
Query 213 GATCCATATCTGAACACTGATGCTGGTACAATGTCCCCTTTTGAGCATGGAGAGGTTTTT 272
||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 138 GATCCTTATTTGAACACTGATGCTGGTACTATGTCCCCTTTTGAGCATGGAGAGGTTTTT 197
Query 273 GTACTCGATGATGGTGGAGAGGTTGATCTTGATTTGGGAAACTACGAAAGATTTCTCGAT 332
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 198 GTACTCGATGATGGTGGAGAGGTTGATCTTGATTTGGGGAACTACGAAAGATTTCTCGAT 257
Query 333 GTGACACTAACCAAAGACAACAACATAACCACTGGGAAGATATATCAGTCTGTTCTTGAC 392
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 258 GTGACACTAACCAAAGACAACAACATAACCACTGGGAAGATATATCAGTCTGTCCTTGAG 317
Query 393 AAGGAACGGAAAGGCGACTACCTTGGGAAGACTGTTCAGGTTGTTCCACACATTACTGAT 452
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 318 AAGGAACGGAAAGGCGACTATCTTGGGAAGACTGTTCAGGTTGTTCCACACATTACTGAT 377
Query 453 GCAATCAAGGATTGGATTGAGTCAGTCTCTCTGATTCCTGTGGATGGAAAGGAAGGCCAA 512
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 378 GCAATCAAGGATTGGATTGAGTCAGTTTCTCTGATTCCTGTGGATGGAATGGAAGGCCAA 437
Query 513 GCTGATGTTTGTGTTATTGAGTTGGGAGGGACTGTTGGTGACATCGAGTCAATGCCTTTT 572
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 438 GCTGATGTTTGTGTTATTGAGTTGGGCGGGACTGTTGGTGACATCGAATCAATGCCTTTT 497
Query 573 ATCGAGGCCTTGAGACAATTGTCATTCTCTGTTGGACCGGATAATTTCTGCCTGATTCAC 632
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 498 ATCGAGGCCTTGAGACAATTGTCATTCTCAGTTGGACCGGAAAATTTCTGCCTGATTCAC 557
Query 633 GTGAGCTTGATTCCCGTTCTTGGTGTTGTTGGGGAGCAGAAAACAAAGCCAACCCAACAC 692
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 558 GTGAGCTTGATTCCCGTTCTGGGTGTTGTTGGGGAGCAGAAAACAAAGCCAACCCAACAC 617
Query 693 ACTGTCCGAGAACTAAGAGCTTTGGGATTGACTCCTCACTTTTTGGCATGTCGCTCTGCT 752
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AGTGTCCGAGAACTAAGAGCTTTGGGATTGACTCCTCACTTTTTGGCATGTCGCTCTGCT 677
Query 753 CAGCCACTGCTGGAAAGTACCAAGGCTAAATTGTCTCAGTTCTGTCATGTGGCGGCAGCT 812
|||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 678 CAGCCACTACTGGAAAGTACCAAGGCAAAATTGTCTCAGTTTTGTCATGTGTCGGCAGCT 737
Query 813 AATATTCTCAATATCCATGATGTTCCAAACATTTGGCATGTTCCTCTCCTACTCCGTAAT 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 AATATTCTCAATATCCATGATGTTCCAAACATTTGGCATGTTCCTCTCCTACTCCGTAAT 797
Query 873 CAAAACGCTCATCACTCGATTCTCAAACAACTGAATCTAACTAACGTTGCGA-CAGCACC 931
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 798 CAAAACGCTCATCACTCGATTCTCAAACAACTGAATCTAACTAGCGTTG-GAACAGCACC 856
Query 932 TGATCTGGATAGCTGGAATAAGATGGCTGAAACTTTTGATAACTTGACAAATCATGTCCA 991
||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |
Sbjct 857 TGATCTGGATAGCTGGACTAGGATGGCTGAGACTTTTGATAACTTGACAAATCATGTAAA 916
Query 992 AATTGCTATGGTTGGAAAGTACATTGGTCTAACGGATTCTTATCTCTCGGTTGTGAAGGC 1051
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 917 AATTGCTATGGTTGGAAAGTACATTGGTCTAACCGATTCTTATCTATCGGTTGTTAAGGC 976
Query 1052 CCTTCTTCATGCCTGCATTGCATGTTCATTGAAGCCACATATCGAATGGATCGCAGCTTC 1111
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 977 CCTTCTTCATGCCTGCATTGCATGTTCATTGAAGCCACATATCGAATGGATTGCAGCTTC 1036
Query 1112 AGATCTTGAAGACGAAAGTGAGAAATCGACTCCGGAGGCGCATGCTGCTGCTTGGAAGAT 1171
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1037 AGATCTTGAAGACGAAAGTGAGAAATCGACTCCGGAGGCACATGCTGCTGCTTGGAACAT 1096
Query 1172 CTTGAAGAGCGCAGAATGCATTCTGGTTCCTGGTGGTTTTGGAGATCGTGGTGTGAGTGG 1231
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1097 CTTGAAGAGCGCAGAATGCATTCTGGTTCCTGGTGGTTTTGGAGATCGTGGCGTGAGCGG 1156
Query 1232 AATGGTTTTAGCAGCCAAATACGCTAGAGAGAACAAAATTCCTTATCTTGGGATCTGCTT 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 AATGGTTTTAGCAGCCAAATACGCTAGAGAGAACAAAATTCCTTATCTTGGGATCTGCTT 1216
Query 1292 GGGGATGCAAATTGCAGTAATTGAGTTTGCAAGATCTGTTTTGGGTTTGGAAAGAGCAAA 1351
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1217 GGGGATGCAAATTGCAGTAATTGAGTTTGCCAGATCTGTTTTGGGTTTGGAAAGAGCAAA 1276
Query 1352 TAGCACTGAGTTCGATGCTCAGACATCTGACCCTGTTGTTATATTTATGCCAGAAGGCTC 1411
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1277 TAGCACCGAGTTCGATGCTCAGACATCTGACCCTGTTGTTATTTTTATGCCAGAAGGCTC 1336
Query 1412 AAGAACACATATGGGAAGCACAATGAGACTTGGATCCCGAAGAACACATTTACACAACCG 1471
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1337 AAGAACACATATGGGAAGCACAATGAGACTTGGATCCCGAAGAACACATTTACAGAACCG 1396
Query 1472 AGACTCTCTCACTTCAAAACTATACGGCCAAGTTTCTTATGTAGACGAAAGGCATAGGCA 1531
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1397 AGACTCTCTCACTTCAAAACTATACGGCGAAGTTAGTTATGTAGACGAAAGGCATAGGCA 1456
Query 1532 CCGTTACGAGGTGAATCCAGAAGTAGCTCAAGCACTTGAAGAAGCTGGTTTAAGATTTGT 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 CCGTTACGAGGTGAATCCAGAAGTAGCTCAAGCACTTGAAGAAGCTGGTTTAAGATTTGT 1516
Query 1592 GGGTAAAGATGATACAGGGAAACGTGTTGAGGTGATTGAGTTTCAAGATCATCCATTCTA 1651
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1517 GGGTAAAGATGATACAGGGAAACGAGTCGAGGTGATTGAGTTTCAAGATCATCCATTCTA 1576
Query 1652 TGTTGGAGTTCAGTTTCATCCAGAATTTAAGTCAAGACCCACTAGACCTTCTCCTCTGTT 1711
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1577 TGTTGGAGTTCAGTTTCATCCAGAATTTAAGTCAAGACCTACTAGACCTTCTCCTCTGTT 1636
Query 1712 TTTAGGGTTTATATTGGCTGCGAGGAAGCTTCTTCAAGCCCATTTAAGCAATTGAGTCGA 1771
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1637 TTTAGGGTTTATATTGGCTGCGAGGAAGCTTCTTCAGGCCCATTTTAGCAATTGAGTCGA 1696
Query 1772 TGAAGCTCGACCTCTTTC 1789
||||||||| |||||||
Sbjct 1697 AGAAGCTCGAGCTCTTTC 1714
> Ahg352427 jgi|Araly1|352427|fgenesh1_pg.C_scaffold_6003020
Length=672
Score = 586 bits (317), Expect = 2e-166
Identities = 345/358 (96%), Gaps = 4/358 (1%)
Strand=Plus/Plus
Query 1139 GACTCCGGAGGCGCATGCTGCTGCTTGGAAGATCTTGAAGAGCGCAGAATGCATTCTGGT 1198
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 36 GACTCCGGAGGCACATGCTGCTGCTTGGAACATCTTCAAGAGCGCAGAATGCATTCTGGT 95
Query 1199 TCCTGGTGGTTTTGGAGATCGTGGTGTGAGTGGAATGGTTTTAGCAGCCAAATACGCTAG 1258
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 96 TCCTGGTGGTTTTGGAGATCGTGGCGTGAGCGGAATGGTTTTAGCAGCCAAATACGCTAG 155
Query 1259 AGAGAACAAAATTCCTTATCTTGGGATCTGCTTGGGGATGCAAATTGCAGTAATTGAGTT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 AGAGAACAAAATTCCTTATCTTGGGATCTGCTTGGGGATGCAAATTGCAGTAATTGAGTT 215
Query 1319 TGCAAGATCTGTTTTGGGTTTGGAAAGAGCAAATAGCACTGAGTTCGATGCTCAGACATC 1378
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 216 TGCCAGATCTGTTTTGGGTTTGGAAAGAGCAAATAGCACCGAGTTCGATGCTCAGACATC 275
Query 1379 TGACCCTGTTGTTATATTTATGCCAG-A--A-GGCTCAAGAACACATATGGGAAGCACAA 1434
||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||
Sbjct 276 TGACCCTGTTGTTATTTTTATGCCAGAAGTATGGCTCAAGAACACATATGGGAAGCACAA 335
Query 1435 TGAGACTTGGATCCCGAAGAACACATTTACACAACCGAGACTCTCTCACTTCAAAACT 1492
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 336 TGAGACTTGGATCCCGAAGAACACATTTACAGAACCGAGACTCTCTCACTTCAAAACT 393
Score = 141 bits (76), Expect = 2e-32
Identities = 80/82 (98%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 1542 GTGAATCCAGAAGTAGCTCAAGCACTTGAAGAAGCTGGTTTAAGATTTGTGGGTAAAGAT 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 GTGAATCCAGAAGTAGCTCAAGCACTTGAAGAAGCTGGTTTAAGATTTGTGGGTAAAGAT 453
Query 1602 GATACAGGGAAACGTGTTGAGG 1623
|||||||||||||| || ||||
Sbjct 454 GATACAGGGAAACGAGTCGAGG 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73666533830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5