BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02130.1
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490360 jgi|Araly1|490360|fgenesh2_kg.6__3494__AT4G02130.1 2309 0.0
Ahg470231 jgi|Araly1|470231|fgenesh2_kg.1__185__AT1G02720.1 697 0.0
Ahg472678 jgi|Araly1|472678|fgenesh2_kg.1__2632__AT1G24170.1 128 1e-28
> Ahg490360 jgi|Araly1|490360|fgenesh2_kg.6__3494__AT4G02130.1
Length=1517
Score = 2309 bits (1250), Expect = 0.0
Identities = 1411/1488 (95%), Gaps = 14/1488 (1%)
Strand=Plus/Plus
Query 53 tcttcttcttcttctCCGAGCTCCGTCCGAGCAGAGAAGAAGAGTAAGGTAAGTTTTAGA 112
||| |||||||||||||||| | ||||||||||||||||||| ||||||||| |||||
Sbjct 1 TCTGCTTCTTCTTCTCCGAG---C-TCCGAGCAGAGAAGAAGAG-AAGGTAAGTATTAGA 55
Query 113 GTGCACTTGTGTGGCACTCTCATTTCTTATCCTGCGCCTCTTACGATTTCTTATGGTGCG 172
|||||||||||||||||||| ||||||||||||||||| | | || |||||||| |||||
Sbjct 56 GTGCACTTGTGTGGCACTCTGATTTCTTATCCTGCGCCAC-TCCGGTTTCTTATCGTGCG 114
Query 173 CTTCTCCGACTAGTTTCGGTGTCTAATGGACTCTTCCTCTTCTTCTCTATCTCTCCAAGA 232
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 115 CTTCTCCGACTAGTTTCGGTGTCTAATGGACTCTTCTTCTTCTTCTCCATCTCTCCAAGA 174
Query 233 AAAAATCTCTTCTGGTTATTTCTAGGGTTTCGTTG-GTTCTTTTTTCGAAATGCTTTGGA 291
|||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 175 AAAAATCTCTTCGGGTTATTTCTAGGGTTTCGTTGATTTCGTTTTTCGAAATGCTTTGGA 234
Query 292 TAACGAGATTTGCTGGATTATTCTCCGCCGCGATGGCAGTGATCGTGTTATCTCCGTCGC 351
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TAACGAGATTTTCTGGATTTTTCTCCGCCGCGATGGCAGTGATCGTGTTATCTCCGTCGC 294
Query 352 TTCAGTCATTTCCTCCGGCGGCGGCAATCCGTTCTTCTCCATCACCGATCTTCAGAAAAG 411
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 295 TTCAGTCATTTCCTCCGGCGGCGGCAATCCGTTCGTCTCCATCACCGATCTTCAGAAAAG 354
Query 412 CTCCAGCGGTGTTCAACAACGGCGACGAATGTCTCTCCTCCGGCGGCGTCTGCAATCCGT 471
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 355 CTCCAGTGGTGTTCAACAACGGCGACGAATGTCTCTCCTCCGGCGGCGTTTGCAATCCGT 414
Query 472 CGTTGGTCCACGTGGCGATCACGTTAGACGTAGAGTACCTGCGTGGCTCAATCGCAGCCG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CGTTGGTCCACGTGGCGATCACGTTAGACGTAGAGTACCTGCGTGGCTCAATCGCAGCCG 474
Query 532 TTAACTCGATCCTTCAGCACTCGGTGTGTCCAGAGAGCGTCTTCTTCCACTTCATCGCCG 591
| || || ||||||||||||||| | ||||||||||||||||||||||||||||||| ||
Sbjct 475 TGAATTCAATCCTTCAGCACTCGATTTGTCCAGAGAGCGTCTTCTTCCACTTCATCGTCG 534
Query 592 TCTCCGAGGAAACAAACCTGTTGGAGTCGCTGGTGAGATCGGTTTTCCCGAGACTGAAAT 651
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 535 TCTCCGAGGAAACAAACCTGTTGGAGTCGCTGGTGAGATCGATTTTCCCGGGATTGAAAT 594
Query 652 TCAATATTTACGATTTTGCCCCTGAGACAGTTCGTGGTTTGATTTCTTCTTCCGTGAGAC 711
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 595 TCAATATTTACGATTTTGCCCCTGAGACTGTTCGTGGTTTGATTTCTTCTTCCGTGAGAC 654
Query 712 AAGCTCTCGAGCAGCCTCTGAACTACGCTAGAAGCTACTTAGCGGATCTGCTGGAGCCTT 771
||||||| ||||| ||| |||| |||||||||| ||||||||||||||||| |||||||
Sbjct 655 AAGCTCTTGAGCAACCTTTGAATTACGCTAGAAATTACTTAGCGGATCTGCTCGAGCCTT 714
Query 772 GTGTTAACCGTGTCATATACTTGGATTCGGATCTTGTCGTCGTCGATGACATCGCTAAGC 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GTGTTAACCGTGTCATATACTTGGATTCGGATCTTGTCGTCGTCGATGACATCGCTAAGC 774
Query 832 TTTGGAAAACTAGCCTAGGCTCGAGGATAATCGGAGCTCCGGAGTATTGTCACGCGAATT 891
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 775 TTTGGAAAACTAGTCTAGGCTCGAGGATCATCGGAGCTCCCGAGTATTGTCACGCGAATT 834
Query 892 TCACGAAATACTTCACCGGAGGATTCTGGTCGGAGGAGAGATTCTCCGGTACCTTTAGAG 951
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 835 TCACGAAATACTTCACCGGAGGATTCTGGTCGGAGGAGAGATTCTCCGGGACGTTTAGAG 894
Query 952 GGAGGAAGCCATGTTACTTCAACACAGGTGTGATGGTGATAGATCTTAAGAAATGGAGAA 1011
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GGAGGAAGCCTTGTTACTTCAACACAGGTGTGATGGTGATAGATCTTAAGAAATGGAGAA 954
Query 1012 GAGGTGGTTACACGAAACGTATCGAGAAATGGATGGAGATTCAGAGAAGAGAGAGGATTT 1071
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 955 GAGGTGGTTACACGAAACGTATCGAGAAATGGATGGAGATTCAGAGAACAGAGAGGATTT 1014
Query 1072 ACGAACTAGGCTCGCTTCCACCGTTTCTTCTAGTTTTCTCCGGTCACGTGGCTCCCATCT 1131
|||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1015 ACGACCTCGGCTCGCTTCCACCGTTTCTTCTTGTTTTCGCCGGTCACGTGGCTCCCATCT 1074
Query 1132 CTCACCGGTGGAACCAGCATGGACTTGGTGGTGACAATGTTAGAGGTAGCTGTCGTGATT 1191
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTCACCGTTGGAACCAGCATGGACTTGGTGGTGACAATGTTAGAGGTAGCTGTCGTGATT 1134
Query 1192 TGCATCCTGGTCCTGTGAGTTTGCTGCATTGGTCTGGTAGTGGCAAGCCCTGGATAAGAC 1251
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1135 TGCATCCTGGTCCAGTGAGTTTGCTGCATTGGTCTGGTAGTGGCAAGCCATGGATAAGAC 1194
Query 1252 TCGATTCCAAACGGCCTTGTCCCTTAGACGCATTATGGACGCCTTACGACTTGTATCGAC 1311
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1195 TCGATTCGAAACGGCCTTGTCCGTTAGACGCATTATGGACGCCTTACGACTTGTATCGAC 1254
Query 1312 ATTCGCATTGACGTTTCAGCGAATGGTGGTGC-T-ATATGAGGAGAGAGTAGAGGAAGGT 1369
||||||||||||||| | | | | | |||||| | ||||||||||||||||||||||||
Sbjct 1255 ATTCGCATTGACGTTGCCG-GTA-GATGGTGCGTTATATGAGGAGAGAGTAGAGGAAGGG 1312
Query 1370 TTCATTGGTCTTGACCGGCCCAG-TCTGAAAGAAAATCAAAGGTAGCTTTTGTAGTAGAA 1428
| || |||||||| |||||| || |||| |||||||||||||||||||||||| ||||||
Sbjct 1313 TGCACTGGTCTTGGCCGGCC-AGGTCTGGAAGAAAATCAAAGGTAGCTTTTGTTGTAGAA 1371
Query 1429 GATGAAAACCCTTTGCCGATAAAATGGGTTTGGTTTAGCCAAACCGGAGACACAACTGAG 1488
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1372 AATGAAAACCCTTTGCTGATAAAATGGGTTTGCTTTAGCCAAACCGGAGACACAACTGAG 1431
Query 1489 ATGTGGGAATTTTATTTTCAAACCGGCGGGTTGGATCATAtttttttt 1536
||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1432 ATGTGGGAATTTTATTTTCAAACCGGCGGGTTGGATCAT-TTTTTTTT 1478
> Ahg470231 jgi|Araly1|470231|fgenesh2_kg.1__185__AT1G02720.1
Length=1383
Score = 697 bits (377), Expect = 0.0
Identities = 721/885 (81%), Gaps = 32/885 (4%)
Strand=Plus/Plus
Query 455 CGGCGTCTGCAATCCGTCGT-TGGTCCACGTGGCGATCACGTTAGACGTAGAGTACCTGC 513
||||||||| || || | | | |||||||| || ||||| | ||| | || ||||| |
Sbjct 390 CGGCGTCTGTAA-CCCTAATCTCGTCCACGTAGCCATCACACTCGACATCGATTACCTCC 448
Query 514 GTGGCTCAATCGCAGCCGTTAACTCGATCCTTCAGCACTCGGTGTGTCCAGAGAGCGTCT 573
||||||||||||||||||| || || ||||| |||||||| ||||||| | |||||||
Sbjct 449 GTGGCTCAATCGCAGCCGTGAATTCAATCCTCCAGCACTCAATGTGTCCTCAAAGCGTCT 508
Query 574 TCTTCCACTTCATCGCCGT-CTCCGAGGAAAC-AAACCTGTTGGAGTCGCTGGTGAGATC 631
||||||||||| ||| | | |||||| || | ||||| | || || ||| | | ||
Sbjct 509 TCTTCCACTTCCTCGTC-TCCTCCGA-GATTCAAAACC---TAGAATCTCTGATTCGTTC 563
Query 632 GGTTTTCCCGAGACTGA--AAT-TCAATATTTACGATTTTGCCCCTGAGACAGTTC-GTG 687
|||||| | | ||| ||| |||| |||||| |||||||||||||||| || | ||
Sbjct 564 AACTTTCCCCAAATTGACGAATCTCAAAATTTACTATTTTGCCCCTGAGACCGTACAGT- 622
Query 688 GTTTGATTTCTTCTTCCGTGAGACAAGCTCTCGAGCAGCC-TCTGAACTACGCTAGAAGC 746
||||||||| ||||||||||||||||| || ||||| || | |||| ||||| ||||
Sbjct 623 CTTTGATTTCATCTTCCGTGAGACAAGCCCTAGAGCAACCGT-TGAATTACGCCAGAAAT 681
Query 747 TACTTAGCGGATCTGCTGGAGCCTTGTGTTAACCGTGTCATATACTTGGATTCGGATCTT 806
||||| ||||||||||| |||||||| ||||| || ||||| |||||||||||||||||
Sbjct 682 TACTTGGCGGATCTGCTCGAGCCTTGCGTTAAGCGAGTCATCTACTTGGATTCGGATCTC 741
Query 807 GTCGTCGTCGATGACATCGCT-AAGCTTTGGAAAACTAGCCTAGGCTC-GAGGATAATCG 864
|||||||| ||||| |||| | |||||||||||||| | ||||| | ||| | |||||
Sbjct 742 GTCGTCGTTGATGATATCG-TCAAGCTTTGGAAAACGGGTTTAGGC-CAGAGAACAATCG 799
Query 865 GAGCTCCGGAGTATTGTCACGCGAATTTCACGAAATACTTCACCGGAGGATTCTGGTCGG 924
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 800 GAGCTCCGGAGTATTGTCACGCGAATTTCACGAAATACTTCACCGGAGGTTTTTGGTCAG 859
Query 925 AGGAGAGATTCTC-CGGTACCTTTAGAGGGAGGAAGCCATGTTACTTCAACACAGGTGTG 983
| |||| || | ||| || || | |||||| || || ||||||||||| || |||||
Sbjct 860 ATAAGAGGTT-TAACGGGACGTTCAAAGGGAGAAACCCTTGTTACTTCAATACTGGTGTA 918
Query 984 ATGGTGATAGATCTT-AAGAAATGGAGAAGAGGT-GGTTACACGAAACGTATCGAGAAAT 1041
|||||||| ||| || ||||| |||||| || | ||| |||||||||| || |||||||
Sbjct 919 ATGGTGATTGAT-TTGAAGAAGTGGAGACGATTTAGGT-ACACGAAACGCATTGAGAAAT 976
Query 1042 GGATGGAGATTCAGA-GAAGAGAGAGGATTTACGAACTAGGCTCGCTTCCACCGTTTCTT 1100
||||||||||||||| || | ||||||||||| || || || || ||||| |||||||||
Sbjct 977 GGATGGAGATTCAGAAGATG-GAGAGGATTTATGAGCTGGGTTCTCTTCCTCCGTTTCTT 1035
Query 1101 CTAGT-TTT-CTCCGGTCACGTGGCTCCCATCTCTCACCGGTGGAACCAGCATGGACTTG 1158
|| || ||| || ||||| || ||||| || || || |||||||| || ||||||||||
Sbjct 1036 CTGGTATTTGCT--GGTCATGTAGCTCCGATTTCGCATCGGTGGAATCAACATGGACTTG 1093
Query 1159 GTGGTGACAATGTTAGAGGTAGCTGTCGTGATTTGCATCCTGGTCCTGTGAGTTTGCTGC 1218
||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 1094 GTGGTGATAATGTTAGAGGTAGCTGCCGTGATTTGCATTCTGGTCCTGTGAGTTTGCTTC 1153
Query 1219 ATTGGTCTGGTAGTGGCAAGCCCTGGATAAGACTCGATTCCAAACGGCCTTGTCCCTTAG 1278
||||||| |||||||| ||||| ||| ||||||| |||||||| | || ||||| ||||
Sbjct 1154 ATTGGTCAGGTAGTGGTAAGCCATGGTTAAGACTTGATTCCAAGCTTCCATGTCCTTTAG 1213
Query 1279 ACGCATTATGGACGCCTTACGACTTGTATCGACATTCGCATTGAC 1323
|| |||| ||| | ||||| || |||||| ||| || |||||||
Sbjct 1214 ACACATTGTGGGCACCTTATGATTTGTATAAACACTCCCATTGAC 1258
> Ahg472678 jgi|Araly1|472678|fgenesh2_kg.1__2632__AT1G24170.1
Length=1588
Score = 128 bits (69), Expect = 1e-28
Identities = 309/418 (74%), Gaps = 44/418 (11%)
Strand=Plus/Plus
Query 861 ATCGGAGCTCCGGAGTATTGTCACGCGAATTTCACGAAATACTTCAC--CGGAGGATTCT 918
||||||||||||||||||||||||||||| ||||| | || ||||| | | || ||||
Sbjct 810 ATCGGAGCTCCGGAGTATTGTCACGCGAACTTCACTCAGTATTTCACTTCCG-GG-TTCT 867
Query 919 GGTCGGAGGAGAGATTCT-CCGG-TACCTT-TAGAGGG--AGGAAGCCATGTTACTTCAA 973
|||| || | | || | |||| | | | | ||| | || || || || |||||
Sbjct 868 GGTCAGACCCG-GCTT-TACCGGGT-C-TAATCTCGGGTCAAAAA-CCTTGCTATTTCAA 922
Query 974 CACAGGTGTGATGGTGATAGATCTT--AAGAAATGGAGAAGAGGTGG--TTACACGAAAC 1029
|||||| ||||||||||| |||||| |||| |||||| || | || ||||| || |
Sbjct 923 CACAGGAGTGATGGTGATGGATCTTGTAAGA--TGGAGA-GAAG-GGAATTACA-GAGA- 976
Query 1030 GTATCGAGA--AATGGATGGAGATT-CAGA-GAAGAGAGAGGATTTACGAACTAGGCTCG 1085
| | | ||| |||||||| | ||| |||| ||||| |||| || ||||| || || ||
Sbjct 977 GAAGCTAGAGCAATGGATGCA-ATTGCAGAAGAAGA-AGAGAATCTACGATCTTGGATCA 1034
Query 1086 CTT-CCACCGTTTCTTCTAGT-TTT-CTCCGGTCACGTGGCTCCCATCTC-TCACCGGTG 1141
|| |||||||||||| | || ||| || ||| | || | | || | ||| | ||
Sbjct 1035 -TTACCACCGTTTCTTTTGGTGTTTGCT--GGTAATGTTGAAGCTAT-TGATCATAGATG 1090
Query 1142 GAACCAGCATGGACTT-GGTGGTGACAATGTTA-GAGGTAGCTGTCG-TGATTTGCATCC 1198
|||||| ||||| || || || |||||| | | |||| || ||||| | ||| ||||||
Sbjct 1091 GAACCAACATGGT-TTAGGAGGAGACAATAT-ACGAGGAAGTTGTCGGTCATT-GCATCC 1147
Query 1199 TGGTCCTGTGAGTTTGCTGCATTGGTCTGGTAGTGGCAAGCCCTGGATAAGACTCGAT 1256
|||||||||||||||| |||||||| ||||| || ||||| ||| | ||||| |||
Sbjct 1148 TGGTCCTGTGAGTTTGTTGCATTGGAGTGGTAAAGGTAAGCCATGGGTTAGACTTGAT 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63496438415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5