BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G02140.1

Length=902
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943522 jgi|Araly1|943522|scaffold_604066.1                        597    4e-170
  Ahg490357 jgi|Araly1|490357|fgenesh2_kg.6__3491__AT4G02150.1         294    6e-79 


> Ahg943522 jgi|Araly1|943522|scaffold_604066.1
Length=382

 Score =  597 bits (323),  Expect = 4e-170
 Identities = 366/386 (95%), Gaps = 5/386 (1%)
 Strand=Plus/Plus

Query  188  CAAGAACAACAACATAGCCAGATATAATGCTGTCTTCACCAGCTTTTGCTGCAGCACGTT  247
            ||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  1    CAACAACAACAACATAGCCAGATATAATGCGGTATTCACCAGCTTTTGCTGCAGCACGTT  60

Query  248  CTACTCTCGGTCGTCGTCTTCATGCGAAGAGACTATCTTCTTCTACTGGTCGAACCGCTG  307
            ||||||||| ||||||||||| ||||||||||||| |||| | | |||| ||||||||||
Sbjct  61   CTACTCTCGTTCGTCGTCTTCCTGCGAAGAGACTAGCTTC-T-T-CTGGGCGAACCGCTG  117

Query  308  ATCCAGAGATTCATGCCCGTAACGATGGAGACGAGCCTAGTCTTTTTCCATCAGACCCCG  367
            |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct  118  ATCCAGAGATTCATGCTCGTAACGATGGAGACGAGCCTGGTCTTTTTCCATCAGACCCCG  177

Query  368  AGGGTTTGGATGATGTAGCGAACCCGAAGACTCCAGCGGATGAGGATGTACCGGATATTC  427
            | |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct  178  AAGGTTTGGATGATGTAGCGAATCCGAAGACTCCAGCCGATGAGGATGTACCGGATATTC  237

Query  428  GACCACCCGGTTTTGTAAAGGAACCGCTTTCTCCGCCAAAAAATCCCA-GAGATACTTCA  486
            ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct  238  GACCACCCGGTTTTGTAAAGGAACCGCTTTCGCCGCCAAAAAAT-CCACGAGATACTTCA  296

Query  487  CACAAGCTTGAATCTACTCCCGTTGGTCTACCTGCAGATCTCAATTTCCAACAGAAACGA  546
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  297  CACAAGCTTGAATCTACTCCTGTTGGTCTACCTGCAGATCTCAATTTCCAACAGAAACGA  356

Query  547  AATTAATAGCAGCAAACGCCTTAGCC  572
            ||||||| ||||||||||||||||||
Sbjct  357  AATTAATTGCAGCAAACGCCTTAGCC  382


> Ahg490357 jgi|Araly1|490357|fgenesh2_kg.6__3491__AT4G02150.1
Length=1735

 Score =  294 bits (159),  Expect = 6e-79
 Identities = 175/183 (96%), Gaps = 0/183 (0%)
 Strand=Plus/Plus

Query  1     AAGATTGAGAATCTTCAGAGTCACGACAACAATGATATCTACGACAAAGCCGTGAAGATC  60
             ||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||
Sbjct  1507  AAGATTGAGAATCTTCAGAGTCATGACAACAATGATATATATGAAAAAGCCGTGAAGATC  1566

Query  61    CTCGAAACATTTTGGACTGAAGACAATGAAGAAGAAGGCAACGACGAGAATCATGCTCCA  120
             || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1567  CTTGAAACCTTTTGGACTGAAGACAATGAAGAAGAAGGCAACGATGAGAATCATGCTCCA  1626

Query  121   CAATCTGGTTTCCAGTTCGGAAGCACCAATGTTCCTCCTGGTCAATTCAACTTTATTTGA  180
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1627  CAATCTGGTTTCCAGTTCGGAAGCACTAATGTTCCTCCTGGTCAATTCAACTTTATTTGA  1686

Query  181   AAG  183
             |||
Sbjct  1687  AAG  1689



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33433798209


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5