BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02140.1 Length=902 Score E Sequences producing significant alignments: (Bits) Value Ahg943522 jgi|Araly1|943522|scaffold_604066.1 597 4e-170 Ahg490357 jgi|Araly1|490357|fgenesh2_kg.6__3491__AT4G02150.1 294 6e-79 > Ahg943522 jgi|Araly1|943522|scaffold_604066.1 Length=382 Score = 597 bits (323), Expect = 4e-170 Identities = 366/386 (95%), Gaps = 5/386 (1%) Strand=Plus/Plus Query 188 CAAGAACAACAACATAGCCAGATATAATGCTGTCTTCACCAGCTTTTGCTGCAGCACGTT 247 ||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1 CAACAACAACAACATAGCCAGATATAATGCGGTATTCACCAGCTTTTGCTGCAGCACGTT 60 Query 248 CTACTCTCGGTCGTCGTCTTCATGCGAAGAGACTATCTTCTTCTACTGGTCGAACCGCTG 307 ||||||||| ||||||||||| ||||||||||||| |||| | | |||| |||||||||| Sbjct 61 CTACTCTCGTTCGTCGTCTTCCTGCGAAGAGACTAGCTTC-T-T-CTGGGCGAACCGCTG 117 Query 308 ATCCAGAGATTCATGCCCGTAACGATGGAGACGAGCCTAGTCTTTTTCCATCAGACCCCG 367 |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 118 ATCCAGAGATTCATGCTCGTAACGATGGAGACGAGCCTGGTCTTTTTCCATCAGACCCCG 177 Query 368 AGGGTTTGGATGATGTAGCGAACCCGAAGACTCCAGCGGATGAGGATGTACCGGATATTC 427 | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 178 AAGGTTTGGATGATGTAGCGAATCCGAAGACTCCAGCCGATGAGGATGTACCGGATATTC 237 Query 428 GACCACCCGGTTTTGTAAAGGAACCGCTTTCTCCGCCAAAAAATCCCA-GAGATACTTCA 486 ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| Sbjct 238 GACCACCCGGTTTTGTAAAGGAACCGCTTTCGCCGCCAAAAAAT-CCACGAGATACTTCA 296 Query 487 CACAAGCTTGAATCTACTCCCGTTGGTCTACCTGCAGATCTCAATTTCCAACAGAAACGA 546 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 297 CACAAGCTTGAATCTACTCCTGTTGGTCTACCTGCAGATCTCAATTTCCAACAGAAACGA 356 Query 547 AATTAATAGCAGCAAACGCCTTAGCC 572 ||||||| |||||||||||||||||| Sbjct 357 AATTAATTGCAGCAAACGCCTTAGCC 382 > Ahg490357 jgi|Araly1|490357|fgenesh2_kg.6__3491__AT4G02150.1 Length=1735 Score = 294 bits (159), Expect = 6e-79 Identities = 175/183 (96%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 1 AAGATTGAGAATCTTCAGAGTCACGACAACAATGATATCTACGACAAAGCCGTGAAGATC 60 ||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||| Sbjct 1507 AAGATTGAGAATCTTCAGAGTCATGACAACAATGATATATATGAAAAAGCCGTGAAGATC 1566 Query 61 CTCGAAACATTTTGGACTGAAGACAATGAAGAAGAAGGCAACGACGAGAATCATGCTCCA 120 || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1567 CTTGAAACCTTTTGGACTGAAGACAATGAAGAAGAAGGCAACGATGAGAATCATGCTCCA 1626 Query 121 CAATCTGGTTTCCAGTTCGGAAGCACCAATGTTCCTCCTGGTCAATTCAACTTTATTTGA 180 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1627 CAATCTGGTTTCCAGTTCGGAAGCACTAATGTTCCTCCTGGTCAATTCAACTTTATTTGA 1686 Query 181 AAG 183 ||| Sbjct 1687 AAG 1689 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33433798209 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5