BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02150.1
Length=1957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490357 jgi|Araly1|490357|fgenesh2_kg.6__3491__AT4G02150.1 2675 0.0
Ahg918924 jgi|Araly1|918924|scaffold_100205.1 785 0.0
> Ahg490357 jgi|Araly1|490357|fgenesh2_kg.6__3491__AT4G02150.1
Length=1735
Score = 2675 bits (1448), Expect = 0.0
Identities = 1623/1707 (95%), Gaps = 14/1707 (1%)
Strand=Plus/Plus
Query 5 ACTCTCTCATTAATCGAACTTGGCGTGT-TTAAATAATCTTCCGATCGTTAATTCTCTTC 63
||||||||||||||||||||| ||||| ||||| |||| |||||||||| |||||||||
Sbjct 1 ACTCTCTCATTAATCGAACTT--CGTGTGTTAAA-AATCCTCCGATCGTTGATTCTCTTC 57
Query 64 CGATTTCGATTCGATTTTAGCGGCGATGTCTCTCAGACCTAGCGCGAAGACGGAGGTGCG 123
||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 58 CGATTTCGATTTGA-TTTAGCGGCGATGTCTCTCAGACCTAGCGCGAAGACGGAGGTACG 116
Query 124 ACGGAATCGGTACAAAGTAGCGGTCGATGCGGAGGAAGGACGGCGGAGGCGAGAGGATAA 183
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ACGGAACCGGTACAAAGTTGCGGTCGATGCGGAGGAAGGACGGCGGAGGCGAGAGGATAA 176
Query 184 CTTGGTTGAGATCAGGAAGAACAAGAGAGAGGAAAATTTGCAGAAG-A---A---GA--G 234
| |||||||||||||||||||||||||||||||||||||||||||| | | || |
Sbjct 177 CATGGTTGAGATCAGGAAGAACAAGAGAGAGGAAAATTTGCAGAAGAAGCGACGCGAGGG 236
Query 235 ATTTACGTCTTCTATGGCTTTTGGCTCAGCAACGGGACAAACGGAACAGGATCTTTCTTC 294
| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 237 ACTCACGTCTTCTATGGCTTTTGGCTCAGCCGCGGGACAAACGGAACAGGATCTTTCTTC 296
Query 295 AGCGAACCAATTAAAAGATAATCTACCTGCTATGGTTGCTGGAATCTGGTCAGAGGATAG 354
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 297 AGCGAAGCAATTGAAAGATAATCTACCAGCTATGGTTGCTGGAATCTGGTCAGAGGATAG 356
Query 355 CAATTCACAATTGGAGGCAACAAATCTCTTGCGGAAACTGCTTTCTATTGAACAAAATCC 414
||| |||||| |||||||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 357 CAACTCACAACTGGAGGCAACAAATCTCTTGCGGAAACTTCTTTCGATTGAGCAAAACCC 416
Query 415 TCCTATCAATGAAGTTGTACAATCTGGTGTTGTTCCTCGTGTTGTGAAGTTTCTTTCCAG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCCTATCAATGAAGTTGTACAATCTGGTGTTGTTCCTCGTGTTGTGAAGTTTCTTTCCAG 476
Query 475 GGATGACTTCCCCAAACTTCAGTTTGAGGCAGCTTGGGCGCTCACCAACATTGCTTCAGG 534
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGATGACTTTCCCAAACTTCAGTTTGAGGCAGCTTGGGCGCTCACCAACATTGCTTCAGG 536
Query 535 GACATCAGAGAACACAAATGTCATCATTGAAAGTGGAGCTGTCCCGATATTCATCCAACT 594
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 GACATCAGAGAACACAAATGTCATCATTGAAAGTGGTGCTGTCCCGATATTCATCCAACT 596
Query 595 TCTCAGCTCTGCTAGTGAAGATGTCCGCGAACAGGCTGTTTGGGCATTGGGAAATGTTGC 654
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 597 TCTCAGCTCTGCTAGTGAAGATGTCCGCGAACAGGCTGTTTGGGCACTGGGAAATGTGGC 656
Query 655 TGGAGACTCACCAAAATGCCGGGATTTAGTCCTAAGTTACGGTGCCATGACACCTCTTCT 714
||||||||||||||||||||| ||| |||||||||| || |||||||||| ||||||||
Sbjct 657 TGGAGACTCACCAAAATGCCGTGATCTAGTCCTAAGCTATGGTGCCATGATGCCTCTTCT 716
Query 715 GTCTCAATTCAATGAGAATACAAAGCTTTCAATGCTGAGAAATGCTACATGGACATTATC 774
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 717 GACTCAATTCAATGAGAATACAAAGCTTTCAATGCTGAGGAATGCTACATGGACATTATC 776
Query 775 AAACTTCTGCAGAGGGAAGCCCCCACCCGCATTTGAACAGACACAACCAGCTTTACCAGT 834
|||||||||||||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct 777 AAACTTCTGCAGAGGGAAGCCCCCGCCTTCTTTTGAACAGACACAACCAGCTTTACCAGT 836
Query 835 TCTTGAGCGCCTTGTGCAATCAATGGATGAAGAAGTTCTCACAGATGCATGCTGGGCTCT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCTTGAGCGCCTTGTGCAATCAATGGATGAAGAAGTTCTCACAGATGCATGCTGGGCTCT 896
Query 895 GTCATACCTCTCGGATAATTCAAACGACAAAATACAAGCAGTCATTGAAGCAGGAGTTGT 954
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 897 GTCATACCTCTCGGATAACTCAAACGACAAAATACAAGCAGTCATCGATGCAGGAGTTGT 956
Query 955 TCCTCGCCTCATCCAGCTCTTAGGTCATTCGTCGCCATCAGTGCTGATTCCTGCTCTTCG 1014
|||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 957 CCCTCGCCTCATCCAGCTCTTAGCTCATTCGTCACCATCAGTGCTGATTCCCGCTCTTCG 1016
Query 1015 TACCATTGGAAATATTGTAACCGGGGATGATCTACAGACTCAGATGGTTCTCGACCAGCA 1074
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1017 TACAATTGGAAATATTGTAACCGGCGATGATCTACAGACTCAGATGGTTCTCGACCATCA 1076
Query 1075 AGCGCTTCCTTGTCTTTTGAACCTTCTAAAAAACAATTACAAGAAGAGTATCAAGAAGGA 1134
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1077 AGCGCTTCCTTGTCTTTTGAACCTTCTAAAAAACACTTACAAGAAGAGTATCAAGAAGGA 1136
Query 1135 AGCTTGCTGGACTATCTCCAACATTACAGCTGGAAATGCAGATCAGATACAAGCAGTGAT 1194
|||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||
Sbjct 1137 AGCTTGCTGGACTATCTCAAACATTACAGCTGGGAATGCAAATCAGATACAAGCAGTGAT 1196
Query 1195 TGATGCAGGTATAATCCAGTCTCTTGTTTGGGTGCTTCAAAGTGCAGAGTTCGAAGTaaa 1254
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TGAAGCAGGTATAATCCAGTCTCTTGTTTGGGTGCTTCAAAGTGCAGAGTTCGAAGTAAA 1256
Query 1255 aaaaGAAGCTGCTTGGGGAATATCAAATGCTACTTCTGGTGGCACTCATGATCAAATCAA 1314
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AAAAGAAGCTGCTTGGGGAATCTCAAATGCTACTTCTGGTGGCACTCATGATCAAATCAA 1316
Query 1315 GTTTATGGTGAGCCAAGGCTGTATCAAACCTCTATGCGATCTCCTTACTTGCCCAGATCT 1374
|||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1317 GTTTCTAGTGAGCCAAGGCTGTATCAAACCTATATGCGATCTCCTTACTTGCCCAGATCT 1376
Query 1375 GAAAGTTGTAACGGTTTGCTTAGAAGCACTAGAGAACATTCTCGTGGTTGGAGAAGCAGA 1434
|||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1377 GAAAGTCATAACGGTTTGCTTAGAAGCACTAGAGAACATTCTCGTGATTGGAGAGGCAGA 1436
Query 1435 GAAGAACTTAGGTCACACAGGAGAAGACAACCTCTACGCTCAAATGATTGACGAAGCAGA 1494
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1437 GAAGAACTTAGGTCATACAGGAGACGACAACCTCTACGCTCAAATGATTGACGAAGCAGA 1496
Query 1495 AGGGTTAGAGAAGATTGAGAATCTTCAGAGTCACGACAACAATGATATCTACGACAAAGC 1554
||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||
Sbjct 1497 AGGGTTAGAGAAGATTGAGAATCTTCAGAGTCATGACAACAATGATATATATGAAAAAGC 1556
Query 1555 CGTGAAGATCCTCGAAACATTTTGGACTGAAGACAATGAAGAAGAAGGCAACGACGAGAA 1614
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1557 CGTGAAGATCCTTGAAACCTTTTGGACTGAAGACAATGAAGAAGAAGGCAACGATGAGAA 1616
Query 1615 TCATGCTCCACAATCTGGTTTCCAGTTCGGAAGCACCAATGTTCCTCCTGGTCAATTCAA 1674
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1617 TCATGCTCCACAATCTGGTTTCCAGTTCGGAAGCACTAATGTTCCTCCTGGTCAATTCAA 1676
Query 1675 CTTTATTTGAAAGGTAAAATAGTTGAA 1701
||||||||||||||||||| |||||||
Sbjct 1677 CTTTATTTGAAAGGTAAAAAAGTTGAA 1703
> Ahg918924 jgi|Araly1|918924|scaffold_100205.1
Length=1178
Score = 785 bits (425), Expect = 0.0
Identities = 716/855 (84%), Gaps = 26/855 (3%)
Strand=Plus/Plus
Query 326 ATGGTTGCTGGAAT-CTGGTCAGAGGATAGCAA-TTCACAATTGGAGGCAACAAATCTCT 383
||| |||||||| | | |||||||||||| || | |||| ||||||| || | ||
Sbjct 262 ATGATTGCTGGAGTAAT-GTCAGAGGATAGAAACAT-ACAACTGGAGGCGACGGCTGGCT 319
Query 384 TGC-GGAAACTGCTTTCTATTGAACAAAATCCTCCTATCAATGAAGTTGTACAATCTGGT 442
| | ||||| ||||||| ||||| | || ||||| |||||||||||||| |||||||||
Sbjct 320 T-CAGGAAATTGCTTTCAATTGAGCGTAACCCTCCGATCAATGAAGTTGTTCAATCTGGT 378
Query 443 GTTGTTCCTCGTGTTGTG-AAGTTTCTTTCCAGGGATGACTTC-CCCAAACTTCAGTTTG 500
||||||||||| ||||| || ||||||||||||||||||||| | | ||||||||||||
Sbjct 379 GTTGTTCCTCGCATTGTGCAA-TTTCTTTCCAGGGATGACTTCACTC-AACTTCAGTTTG 436
Query 501 AGGCAGCTTGGGCGCTCACCAACATTGCTTCAGGGACATCAGAGAACAC-AAATGTCATC 559
|||||||||||||||| ||||| || |||||||||||||| |||||||| ||| |||||
Sbjct 437 AGGCAGCTTGGGCGCTTACCAATATCGCTTCAGGGACATCTGAGAACACTAAA-GTCATT 495
Query 560 ATTGAAAGTGGAGCTGTCCCGATATTCATCCAACTTCTCAGCTCTGCTAGTGAAGATGTC 619
||||| ||||| |||||||| ||||| || ||||||| || ||||| ||||| || |||
Sbjct 496 ATTGATAGTGGGGCTGTCCCTTTATTCGTCAAACTTCTTAGTTCTGCAAGTGATGAAGTC 555
Query 620 CGCGAACAGGCTGTTTGGGCATTGGGAAATGTTGCTGGAGACTCACCAAAATGCCGGGAT 679
|| ||||||||||| |||||||||||||| |||||||| ||||| ||||| ||||| ||
Sbjct 556 CGAGAACAGGCTGTCTGGGCATTGGGAAACGTTGCTGGTGACTCGCCAAAGTGCCGTGA- 614
Query 680 TTA-GTCCTAAGTTACG-GTGCCATGACACCTCTTCTGTCTCAATTCAATGAGAATACAA 737
| | |||||||||| || | ||||||| ||||| || |||||||||||||| || |||
Sbjct 615 TCATGTCCTAAGTTGCGAG-GCCATGATGTCTCTTTTGGCTCAATTCAATGAGCATTCAA 673
Query 738 AGCTTTCAATGCTGAGAAATGCTACATGGACATTATCAAACTTCTGCAGAGGGAAGCCCC 797
|||| || |||||||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 674 AGCTCTCCATGCTGAGGAATGCTACATGGACATTATCAAATTTCTGCAGAGGGAAG-CCG 732
Query 798 CA-CCCGCATTTGAACAGACACAACCAGCTTTACCAGTTCTTGAGCGCCTTGTGCAATCA 856
|| || ||||||||||||||| || |||||||||||| ||||||||||||| |||| |||
Sbjct 733 CAGCCTGCATTTGAACAGACAAAAGCAGCTTTACCAGCTCTTGAGCGCCTTCTGCATTCA 792
Query 857 ATGGATGAAGAAGTTCTCACAGATGCATGCTGGGCTCTGTCATACCTCTCGGATAATTCA 916
| || |||||||||||||||||||||| ||||||||| ||||| || || ||| | ||
Sbjct 793 ACCGACGAAGAAGTTCTCACAGATGCATCCTGGGCTCTCTCATATCTATCTGATGGTACA 852
Query 917 AACGACAAAATACAAGCAGTCATTGAAGCAGGAGTTGTTCCTCGCCTCATCCAGCTCTTA 976
||||| ||||||||| | || || || || || || | ||||| || | |||||||||
Sbjct 853 AACGAGAAAATACAAACTGTTATCGACGCTGGCGTCATACCTCGTCTTGTTCAGCTCTTA 912
Query 977 GGTCATTCGTCGCCATCAGTGCTGATTCCTGCTCTTCGTACCATTGGAAATATTGTAACC 1036
| |||| | || || ||||| ||| |||| ||||| ||||||||||| ||||||||||||
Sbjct 913 GCTCATCCATCACCCTCAGTTCTGGTTCCAGCTCTCCGTACCATTGGTAATATTGTAACC 972
Query 1037 GGGGATGATCTACAGACTCA-GATGGTTCTCGACCAG-CAAGCGCTTCCTTGTCTT-TTG 1093
|| |||||||| |||||||| || |||| | | ||| |||||||||||| || || ||
Sbjct 973 GGAGATGATCTTCAGACTCAGGA-GGTTAT-TAACAGTCAAGCGCTTCCTGGT-TTGTTA 1029
Query 1094 AACCTTCTAAAAAACA-ATTACAAGAAGAGTATCAAGAAGGAAGCTTGCTGGACTATCTC 1152
|||||| | ||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1030 AACCTTTTGAAAAACACA-TACAAGAAGAGTATCAAGAAGGAAGCTTGCTGGACGATCTC 1088
Query 1153 CAACATTACAGCTGG 1167
||||||||||||||
Sbjct 1089 TAACATTACAGCTGG 1103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73552263095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5