BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G02160.1

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490356 jgi|Araly1|490356|fgenesh2_kg.6__3490__AT4G02160.1         750    0.0  


> Ahg490356 jgi|Araly1|490356|fgenesh2_kg.6__3490__AT4G02160.1
Length=546

 Score =  750 bits (406),  Expect = 0.0
 Identities = 503/547 (92%), Gaps = 17/547 (3%)
 Strand=Plus/Plus

Query  1    ATGGAAATTCAAAATCAGATTAATGGTGGCCAAGAAGAGATCAAGAATATGAAGAAGAAG  60
            ||||| |||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct  1    ATGGACATTCAAAATCAGTTTAATGGTGGCCAAGAAGAGATCAAGAATAAGATGAAGAAG  60

Query  61   AAACGATCACGTGGTTTTCACGTGATCGGTGTCGTTTTATACATGCTTCGGC-GTCGGAG  119
            ||||||||||||||||||||||| || |||||||||||||||||||||| || ||| |||
Sbjct  61   AAACGATCACGTGGTTTTCACGTCATTGGTGTCGTTTTATACATGCTTC-GCAGTCAGAG  119

Query  120  GAGGAGCAAGCCGCTTAATAACGGGTTTTGGCGGCGAGTTGTCGAGTCCTTTGGGCAGTT  179
            ||| |||||||||||||||||||||||||||||||||||||| |||||| || |||||||
Sbjct  120  GAGAAGCAAGCCGCTTAATAACGGGTTTTGGCGGCGAGTTGTTGAGTCCATTAGGCAGTT  179

Query  180  GAAAAACGACAATGTTACGGTACTTCCATCGTCGTCTAATATTACGATACTACCACCATC  239
            ||||||||| ||||||||||||||||||   ||||||||||| |||||||| ||||||||
Sbjct  180  GAAAAACGAAAATGTTACGGTACTTCCA---TCGTCTAATATAACGATACTGCCACCATC  236

Query  240  ATCTTCTCCGGTGACGGATGAAGTTCCGGCGAGTAGTGACGATCAGGTATCGGAGATGGT  299
             ||| ||||||| || || ||||||   ||||||||||||||||||||||||||||||||
Sbjct  237  GTCTGCTCCGGTTACAGAGGAAGTTTTAGCGAGTAGTGACGATCAGGTATCGGAGATGGT  296

Query  300  TGAGGTTCTCACGGCGACGTCTAGTTCTTGCTCTTCGGGAATCTCGGGATATGGATCAGC  359
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGAGGTTTTCACGGCGACGTCTAGTTCTTGCTCTTCGGGAATCTCGGGATATGGATCAGC  356

Query  360  AAAGTCGTTGCGAGATATGGATTGTCTtgatgaagatgatgatgat---gatga--a--a  412
            |||||||||||| |||||||||||||||||||||||||||||||||   |||||  |  |
Sbjct  357  AAAGTCGTTGCGCGATATGGATTGTCTTGATGAAGATGATGATGATTATGATGATGATGA  416

Query  413  --a-t-t-atggtaatgatgatggaggtgatgagatgattgatgCGAAAGCTGAGGAGTT  467
              | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  417  TGAATATTATGGTAATGATGATGGAGGTGATGAGATGATTGATGCGAAAGCTGAGGAGTT  476

Query  468  TATTGTGAGATTTTATGAACAGATGAGGATGCAAAATCAGGCTTATACAGAACGTTACAA  527
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct  477  TATTGTGAGATTTTATGAACAAATGAGGATGCAAAATCAGGCTTATACAGAACGTAACAA  536

Query  528  AGCTAAA  534
            ||| |||
Sbjct  537  AGCCAAA  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20146150992


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5