BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02170.1
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490355 jgi|Araly1|490355|fgenesh2_kg.6__3489__AT4G02170.1 800 0.0
Ahg918920 jgi|Araly1|918920|scaffold_100201.1 148 3e-35
> Ahg490355 jgi|Araly1|490355|fgenesh2_kg.6__3489__AT4G02170.1
Length=535
Score = 800 bits (433), Expect = 0.0
Identities = 490/518 (95%), Gaps = 2/518 (0%)
Strand=Plus/Plus
Query 77 AATGGCGGATTCGTCTCAGAAGAAAATCAGAAGAAACGCGATAACACATAAAGCATGGAG 136
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 19 AATGGCGGATTCGTCTCAGAAGAAAATCAGAAGAAACGCAATAACACATAAAGCTTGGAG 78
Query 137 TCTCATGAAGATGGCTCTTCTATGGGGAAGAAAAGGTGGAGTTTTCAAAAAATGGCCATT 196
|||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 79 TCTCGTGAGGATGGCTCTTCTATGGGGAAGAAAAGGTGGAGTTTTCAAAAGATGGCCATT 138
Query 197 GTTCGAACTACGTAGCTTGTTCTTCAAGCATCTCAAAGCCCTAGCTCATCATCATAGTAA 256
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 139 GTTCGAACTACGTAGCTTGTTCTCCAAGCATCTCAAAGCCCTAGCTCGTCATCATAGCAA 198
Query 257 CGGTGACCGTTATTACGGAGAACGCCAGCTTTCCTTTGATGAAACGCCGTTATTTAACGT 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 199 CGGTGACCGTTATTACGGAGAACGCCAGCTTTCCTTTGATGAAACGCCGTTATTTAATGT 258
Query 317 CAAGAAGAAGATGCATTGTCCTACTTCGTCTATGAGGTTCCTCCTCCTCCCCTGCTTTGC 376
|||||||||||||||| |||||||| |||||||||||||||||||||| |||||| ||||
Sbjct 259 CAAGAAGAAGATGCATCGTCCTACTACGTCTATGAGGTTCCTCCTCCTTCCCTGCATTGC 318
Query 377 TCCTCCCGTAGATTTTGACTATGACTTTGAAATGGACGGTCAAGATTATTCCGACGAGGT 436
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 319 TCCTCCATTAGATCTTGACTATGACTTTGAAATGGATGGTCAAGATTATTCCGATGAGGT 378
Query 437 -ACAATCGTACGGTTACGATGAATCTTGTTCGGAAGAAGAGAAAGGGGTGGATGTGAGAG 495
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 379 TACT-TCGTACGGTTACGATGAATCTTACTCGGAAGAAGAGAAAGGGGTGGATGTGAGAG 437
Query 496 CAGAGGAGTTCATTGCTAAGTTCTATGAGCAGATCAAGTTGCAGAGACAAGTGTCTTATT 555
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 438 CTGAGGAGTTCATTGCTAAGTTCTATGAGCAGATCAAGTTGCAGAGACAAGTCTCTTATT 497
Query 556 TGAAATACAAACAACACAACGACGCCGTATTATTATAG 593
|| ||||||||||||||||||||||||||| ||||||
Sbjct 498 TGGAATACAAACAACACAACGACGCCGTATCGTTATAG 535
> Ahg918920 jgi|Araly1|918920|scaffold_100201.1
Length=588
Score = 148 bits (80), Expect = 3e-35
Identities = 280/369 (76%), Gaps = 43/369 (12%)
Strand=Plus/Plus
Query 119 AACACATAA-AGCATGGAGTCTCATGAAG-ATGGCTCTTCTATGGGGAAGAAAAGGTGGA 176
|||||| || ||| |||||||| || || ||||||||||||||||||||||||||||||
Sbjct 57 AACACA-AAGAGCTTGGAGTCTTGTG-AGAATGGCTCTTCTATGGGGAAGAAAAGGTGGA 114
Query 177 GTTTTCAAAAAATGGC-CATTGTTCGAACTACGTAGCTTGTTCTTC-AAGCATCTCAAAG 234
| ||||| | ||||| ||| |||||| || || | |||||| ||| |||||||||| ||
Sbjct 115 ATCTTCAAGAGATGGCACAT-GTTCGAGCTCCGCAACTTGTT-TTCCAAGCATCTCAGAG 172
Query 235 CCCTAGCTCATCATCATAG--TA-ACGGTGACCGTTAT-T---ACG----G---AGAACG 280
|||||||||||||| |||| | || ||||||||| | ||| | ||||
Sbjct 173 CCCTAGCTCATCATAATAGCCTTGACAACGACCGTTATATCTCACGTTACGGCGAGAAA- 231
Query 281 CCAGCTTTCCTTT-GATGAAACGCCGTTATTTAACGTCAAGAAGAAGATGCATTGTCCTA 339
| |||| || ||| || || ||||| | |||||||| |||| ||||| |||||
Sbjct 232 C-AGCTCTC-TTTCGACGAGACGCCCATCTTTAACGTTAAGA------TGCATCGTCCTG 283
Query 340 CTTCGTCTATGAGGTTCCTCCTCCTCCCCTGCTTTGCTCCTCCCGTAGATTTTGACTATG 399
| || | |||||||||||| | | || ||| ||||||||||||| || |||||||| |
Sbjct 284 CATC--C-ATGAGGTTCCTC-T--TGCCTTGCATTGCTCCTCCCGTTGACTTTGACTACG 337
Query 400 ACTTTGAAATGGACGGTCAAGATTATTCCGACGAGGT-ACAATCGTACGG-T--TACGAT 455
|||| ||| |||| |||||||| || | ||||| || | | || ||||| | ||||||
Sbjct 338 ACTTCGAATTGGATTGTCAAGATGATACTGACGATGTTAGA-TCCTACGGCTACTACGAT 396
Query 456 GAATCTTGT 464
| ||||||
Sbjct 397 GGTTCTTGT 405
Score = 148 bits (80), Expect = 3e-35
Identities = 107/120 (89%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 467 GGAAGAAGAGAAAGGG-GTGGATGTGAGAGCAGAGGAGTTCATTGCTAAGTTCTATGAGC 525
||||| |||| ||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 447 GGAAGGAGAG-AAGGGTGTTGATGTGAGAGCAGAGGAGTTCATTGCTAAATTCTATGAGC 505
Query 526 AGATCAAGTTGCAGAGACAAGTGTCTTATTTGAAATACAAACAACACAACGACGCCGTAT 585
|||| ||||||||||||||| | ||||||||| ||||||| |||||||||| | |||||
Sbjct 506 AGATGAAGTTGCAGAGACAAATCTCTTATTTGCAATACAAGGAACACAACGAAGTCGTAT 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21710530141
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5