BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02170.1 Length=593 Score E Sequences producing significant alignments: (Bits) Value Ahg490355 jgi|Araly1|490355|fgenesh2_kg.6__3489__AT4G02170.1 800 0.0 Ahg918920 jgi|Araly1|918920|scaffold_100201.1 148 3e-35 > Ahg490355 jgi|Araly1|490355|fgenesh2_kg.6__3489__AT4G02170.1 Length=535 Score = 800 bits (433), Expect = 0.0 Identities = 490/518 (95%), Gaps = 2/518 (0%) Strand=Plus/Plus Query 77 AATGGCGGATTCGTCTCAGAAGAAAATCAGAAGAAACGCGATAACACATAAAGCATGGAG 136 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 19 AATGGCGGATTCGTCTCAGAAGAAAATCAGAAGAAACGCAATAACACATAAAGCTTGGAG 78 Query 137 TCTCATGAAGATGGCTCTTCTATGGGGAAGAAAAGGTGGAGTTTTCAAAAAATGGCCATT 196 |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 79 TCTCGTGAGGATGGCTCTTCTATGGGGAAGAAAAGGTGGAGTTTTCAAAAGATGGCCATT 138 Query 197 GTTCGAACTACGTAGCTTGTTCTTCAAGCATCTCAAAGCCCTAGCTCATCATCATAGTAA 256 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || Sbjct 139 GTTCGAACTACGTAGCTTGTTCTCCAAGCATCTCAAAGCCCTAGCTCGTCATCATAGCAA 198 Query 257 CGGTGACCGTTATTACGGAGAACGCCAGCTTTCCTTTGATGAAACGCCGTTATTTAACGT 316 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 199 CGGTGACCGTTATTACGGAGAACGCCAGCTTTCCTTTGATGAAACGCCGTTATTTAATGT 258 Query 317 CAAGAAGAAGATGCATTGTCCTACTTCGTCTATGAGGTTCCTCCTCCTCCCCTGCTTTGC 376 |||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||| Sbjct 259 CAAGAAGAAGATGCATCGTCCTACTACGTCTATGAGGTTCCTCCTCCTTCCCTGCATTGC 318 Query 377 TCCTCCCGTAGATTTTGACTATGACTTTGAAATGGACGGTCAAGATTATTCCGACGAGGT 436 |||||| ||||| |||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 319 TCCTCCATTAGATCTTGACTATGACTTTGAAATGGATGGTCAAGATTATTCCGATGAGGT 378 Query 437 -ACAATCGTACGGTTACGATGAATCTTGTTCGGAAGAAGAGAAAGGGGTGGATGTGAGAG 495 || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 379 TACT-TCGTACGGTTACGATGAATCTTACTCGGAAGAAGAGAAAGGGGTGGATGTGAGAG 437 Query 496 CAGAGGAGTTCATTGCTAAGTTCTATGAGCAGATCAAGTTGCAGAGACAAGTGTCTTATT 555 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 438 CTGAGGAGTTCATTGCTAAGTTCTATGAGCAGATCAAGTTGCAGAGACAAGTCTCTTATT 497 Query 556 TGAAATACAAACAACACAACGACGCCGTATTATTATAG 593 || ||||||||||||||||||||||||||| |||||| Sbjct 498 TGGAATACAAACAACACAACGACGCCGTATCGTTATAG 535 > Ahg918920 jgi|Araly1|918920|scaffold_100201.1 Length=588 Score = 148 bits (80), Expect = 3e-35 Identities = 280/369 (76%), Gaps = 43/369 (12%) Strand=Plus/Plus Query 119 AACACATAA-AGCATGGAGTCTCATGAAG-ATGGCTCTTCTATGGGGAAGAAAAGGTGGA 176 |||||| || ||| |||||||| || || |||||||||||||||||||||||||||||| Sbjct 57 AACACA-AAGAGCTTGGAGTCTTGTG-AGAATGGCTCTTCTATGGGGAAGAAAAGGTGGA 114 Query 177 GTTTTCAAAAAATGGC-CATTGTTCGAACTACGTAGCTTGTTCTTC-AAGCATCTCAAAG 234 | ||||| | ||||| ||| |||||| || || | |||||| ||| |||||||||| || Sbjct 115 ATCTTCAAGAGATGGCACAT-GTTCGAGCTCCGCAACTTGTT-TTCCAAGCATCTCAGAG 172 Query 235 CCCTAGCTCATCATCATAG--TA-ACGGTGACCGTTAT-T---ACG----G---AGAACG 280 |||||||||||||| |||| | || ||||||||| | ||| | |||| Sbjct 173 CCCTAGCTCATCATAATAGCCTTGACAACGACCGTTATATCTCACGTTACGGCGAGAAA- 231 Query 281 CCAGCTTTCCTTT-GATGAAACGCCGTTATTTAACGTCAAGAAGAAGATGCATTGTCCTA 339 | |||| || ||| || || ||||| | |||||||| |||| ||||| ||||| Sbjct 232 C-AGCTCTC-TTTCGACGAGACGCCCATCTTTAACGTTAAGA------TGCATCGTCCTG 283 Query 340 CTTCGTCTATGAGGTTCCTCCTCCTCCCCTGCTTTGCTCCTCCCGTAGATTTTGACTATG 399 | || | |||||||||||| | | || ||| ||||||||||||| || |||||||| | Sbjct 284 CATC--C-ATGAGGTTCCTC-T--TGCCTTGCATTGCTCCTCCCGTTGACTTTGACTACG 337 Query 400 ACTTTGAAATGGACGGTCAAGATTATTCCGACGAGGT-ACAATCGTACGG-T--TACGAT 455 |||| ||| |||| |||||||| || | ||||| || | | || ||||| | |||||| Sbjct 338 ACTTCGAATTGGATTGTCAAGATGATACTGACGATGTTAGA-TCCTACGGCTACTACGAT 396 Query 456 GAATCTTGT 464 | |||||| Sbjct 397 GGTTCTTGT 405 Score = 148 bits (80), Expect = 3e-35 Identities = 107/120 (89%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 467 GGAAGAAGAGAAAGGG-GTGGATGTGAGAGCAGAGGAGTTCATTGCTAAGTTCTATGAGC 525 ||||| |||| ||||| || ||||||||||||||||||||||||||||| |||||||||| Sbjct 447 GGAAGGAGAG-AAGGGTGTTGATGTGAGAGCAGAGGAGTTCATTGCTAAATTCTATGAGC 505 Query 526 AGATCAAGTTGCAGAGACAAGTGTCTTATTTGAAATACAAACAACACAACGACGCCGTAT 585 |||| ||||||||||||||| | ||||||||| ||||||| |||||||||| | ||||| Sbjct 506 AGATGAAGTTGCAGAGACAAATCTCTTATTTGCAATACAAGGAACACAACGAAGTCGTAT 565 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21710530141 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5