BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02180.1
Length=2970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943568 jgi|Araly1|943568|scaffold_604112.1 244 2e-63
Ahg895784 jgi|Araly1|895784|Al_scaffold_0006_3780 235 1e-60
Ahg943517 jgi|Araly1|943517|scaffold_604061.1 139 1e-31
Ahg925181 jgi|Araly1|925181|scaffold_200742.1 97.1 6e-19
Ahg491165 jgi|Araly1|491165|fgenesh2_kg.7__598__AT4G34890.1 73.1 1e-11
> Ahg943568 jgi|Araly1|943568|scaffold_604112.1
Length=351
Score = 244 bits (132), Expect = 2e-63
Identities = 238/287 (83%), Gaps = 15/287 (5%)
Strand=Plus/Plus
Query 103 ATGGATTCTGAGGGAGTGTTAATGCCGTTGGTCCATGAACATCTTATGATGCCTTGGAAT 162
|||||||||||||||||||||||||||||| |||| || |||| ||||||||||||||||
Sbjct 26 ATGGATTCTGAGGGAGTGTTAATGCCGTTGATCCACGAGCATCATATGATGCCTTGGAAT 85
Query 163 GATCTAAGGAAAGGTGATTGTTGTGGACTCTCGAAAGCTGTCAGTGTTGGTTATTATTGC 222
|||||||||||||||||||| ||||||| || | ||||| |||||| ||| || |||||
Sbjct 86 GATCTAAGGAAAGGTGATTGCTGTGGACACTTGGAAGCTATCAGTGATGGCTACTATTGT 145
Query 223 AAAAGCTGCGATTT-TTTCGCCCACAAGAAATGTGGCGAGTC-CTCCGAGTTTATCCAAC 280
|||| ||||||||| ||| | |||||||||||| | | || | |||| |||||| |||
Sbjct 146 AAAACCTGCGATTTCTTTTTAC-ACAAGAAATGTGTCCACTCAC-CCGAATTTATCGAAC 203
Query 281 ATCCATCTCACCCCAATCACACTCTTCAGCTTCGAAGTAG-CGAAGGCTGTAATAGCTGC 339
| |||||||||||| |||||||||||| ||||| ||||| | | | || ||| ||||
Sbjct 204 ACCCATCTCACCCCGATCACACTCTTCGGCTTCAAAGTAAACCA---C-GTCATAACTGC 259
Query 340 AATTTATGTGG-AAG-GACCATT-AGTGACCTATTCTATCGTTGTGA 383
| ||||||||| ||| || ||| | | | ||||||||||||||||
Sbjct 260 AGTTTATGTGGCAAGAGAAAATTGAAT-A--TATTCTATCGTTGTGA 303
> Ahg895784 jgi|Araly1|895784|Al_scaffold_0006_3780
Length=414
Score = 235 bits (127), Expect = 1e-60
Identities = 145/154 (94%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 103 ATGGATTCTGAGGGAGTGTTAATGCCGTTGGTCCATGAACATCTTATGATGCCTTGGAAT 162
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGATTGTGAGGGAGTGTTAATGCCGTTGGTCCACGAACATCTTATGATGCCTTGGAAT 60
Query 163 GATCTAAGGAAAGGTGATTGTTGTGGACTCTCGAAAGCTGTCAGTGTTGGTTATTATTGC 222
|||||||||||||||||||| |||||||||| | ||||| | |||||||| |||||||||
Sbjct 61 GATCTAAGGAAAGGTGATTGCTGTGGACTCTTGGAAGCTATTAGTGTTGGCTATTATTGC 120
Query 223 AAAAGCTGCGATTTTTTCGCCCACAAGAAATGTG 256
||||||||||||||||||| ||||||||||||||
Sbjct 121 AAAAGCTGCGATTTTTTCGTCCACAAGAAATGTG 154
> Ahg943517 jgi|Araly1|943517|scaffold_604061.1
Length=4143
Score = 139 bits (75), Expect = 1e-31
Identities = 87/93 (94%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCTTATCAACCAATGGTTTCCACTGGACACTCTTGCAACTCCAGAGCGTATCAGG 60
|||||||||| || | ||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 3992 ATGGGTCTTAGCAGCAAATGGTTTCCACTGGACACTCCTGCGACTCCAGAGCGTATCAGG 4051
Query 61 ATGGCTTGTTTCGACGAGTTTACTTCTCCTTTT 93
||||||||||||||||||||||||| |||||||
Sbjct 4052 ATGGCTTGTTTCGACGAGTTTACTTGTCCTTTT 4084
> Ahg925181 jgi|Araly1|925181|scaffold_200742.1
Length=277
Score = 97.1 bits (52), Expect = 6e-19
Identities = 96/117 (82%), Gaps = 4/117 (3%)
Strand=Plus/Plus
Query 142 CATCTTATGATGCCTTGGAATGATCTAAGGAAAGGTGATTGTTGTGGAC-TCTCGAAAGC 200
|||||||||||||||||||||||||||||||||||||||||||||| || | | || ||
Sbjct 57 CATCTTATGATGCCTTGGAATGATCTAAGGAAAGGTGATTGTTGTGAACGTTTTGAT-GC 115
Query 201 TGTCAGTGTTGGTTATTATTGCAAAAGCT-GCGATTTTTTCGCCCACAAGAAATGTG 256
| | | || ||| || || ||||||| || | |||| ||| |||||||| |||||
Sbjct 116 TATTAATGATGGCTACTACTGCAAAA-CTTGTGATTCCTTCATCCACAAGACATGTG 171
> Ahg491165 jgi|Araly1|491165|fgenesh2_kg.7__598__AT4G34890.1
Length=4316
Score = 73.1 bits (39), Expect = 1e-11
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 46 CCAGAGCGTATCAGGATGGCTTGTTTCGACGAGTTTACTTCTCCTTTT 93
|||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 4079 CCAGAGCGTATCAGGATGGCTTGTTTCGACGAGTTTTCAGCTCCTTTT 4126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112137681280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5