BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02195.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490353 jgi|Araly1|490353|fgenesh2_kg.6__3487__AT4G02195.1 1727 0.0
> Ahg490353 jgi|Araly1|490353|fgenesh2_kg.6__3487__AT4G02195.1
Length=1134
Score = 1727 bits (935), Expect = 0.0
Identities = 1078/1146 (94%), Gaps = 14/1146 (1%)
Strand=Plus/Plus
Query 3 TTTGCGATTCAGATTCGTTTGCTTTTGCCGACGACAAAAGCTCCGATTTTGTTTATTTTC 62
|||||||||||||||||||||||||| ||||||||||||||||||| | | | ||
Sbjct 1 TTTGCGATTCAGATTCGTTTGCTTTTTCCGACGACAAAAGCTCCGAATCCG---A---TC 54
Query 63 TCCGGGAAATTTTACTTTCGAGATTCTGTTGAGAATCAATTGATTTGGTATTGATGGCGA 122
| | ||||| || || || ||| |||||||||||||||||| |||||||||||
Sbjct 55 T--TGTTTATTTT--TTCCGGGA-AATGTAGAGAATCAATTGATTTGGCATTGATGGCGA 109
Query 123 CGAGGAATCGAACGACGGTGTACCGGAAACACAGGGATGCGTGTAAGAGCGCGCGTGCTC 182
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 110 CGAGGAATCGAACGACGGTGTACCGGAAACACAGGGATGCGTGCAAGAGCGCGCGTGCTC 169
Query 183 CATTATCTTTATCGGCGTCTGATTCGTTCGGTGGTCCGGTGATCGAAATGGTTAGCGGTT 242
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 CTTTATCTTTATCGGCGTCTGATTCGTTCGGTGGTCCGGTGATCGAAATGGTTAGCGGTT 229
Query 243 CATTTTCCCGGTCCAATCACTCCTCTTATGCTCCTTTGAATTCCTATGATCCTGGTCCAT 302
| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 230 CGTTTTCTCGGTCAAATCACTCCTCTTATGCTCCTTTGAATTCCAATGATCCTGGTCCAT 289
Query 303 CAAGTAGTGATGCCTTCACAATTGGTATGCCACCAGCTTGGGTTGATGATTCTGAGGAGA 362
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CAAGTAGCGATGCATTCACAATTGGTATGCCACCAGCTTGGGTTGATGATTCTGAGGAGA 349
Query 363 TAACTTTTAATATACAAAAGGTGCGAGACAAAATGAATGAACTAGCAAAGGCACATTCAA 422
|||| | || |||||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 350 TAACATATAGTATACAAAAGGTGCGAGACAAAATGAGTGAACTAGCTAAGGCACATTCGA 409
Query 423 AGGCTCTTATGCCTACATTTGGAGATAACAAAGGGATTCATCGTGAAGTCGAGATGCTCA 482
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 AGGCACTCATGCCTACATTTGGAGATAACAAAGGGATTCATCGTGAAGTCGAGATGCTCA 469
Query 483 CTCATGAGATCACAGATTTGTTGAGGAAGTCAGAAAAGAGATTGCAGATGTTATCTACTA 542
||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 470 CTCATGAAATTACAGATTTGTTGAGGAAGTCAGAAAAGAGATTGCAGAAATTATCTACTA 529
Query 543 GAGGGCCTTCTGAAGAATCAAATCTCAGGAAAAATGTGCAGCGTTCTCTTGCAACAGATC 602
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 530 GAGGGCCTTCTGAAGAATCCAATCTCAGAAAAAATGTGCAGCGTTCTCTTGCAACAGATC 589
Query 603 TTCAGAACCTTTCCATGGAGCTCCGCAGAAAACAGTCTACTTACTTAAAACGTCTGCAGC 662
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 590 TTCAGAACCTTTCCATGGAGCTCCGCAGAAAACAGTCTACTTATTTAAAACGTCTGCAGC 649
Query 663 AGCAGAAAGAGGGTCAGGATGAAGTAGATTTAGAGTTTAATGTGAATGGAAAGATGTCGA 722
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 650 AGCAGAAAGAGGGTCAGGATGAAGTAGATTTAGAGTTTAACGTGAATGGAAAGATGTCGA 709
Query 723 GACTGGATGAAGAGGATGAACTTGGTGGGATGGGTTTCGATGAACACCAGACAATCAAGT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GACTGGATGAAGAGGATGAACTTGGTGGGATGGGTTTCGATGAACACCAGACAATCAAGT 769
Query 783 TGAAGGAAGGGCAACATGTCTCAGCGGAAAGGGAACGAGAGATACAACAGGTTCTGGGTT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TGAAGGAAGGGCAACATGTCTCAGCGGAAAGGGAACGAGAGATACAACAGGTTCTGGGTT 829
Query 843 CCGTGAATGACCTTGCACAGATAATGAAAGACTTATCAGCCCTTGTGATTGACCAGGGCA 902
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CCGTGAACGACCTTGCACAGATAATGAAAGACTTATCAGCCCTTGTGATTGACCAGGGCA 889
Query 903 CGATTGTTGATCGGATAGACTACAATGTCCAAAACGTTTCTACATCGGTCGAGGAAGGCT 962
||||||||||||| |||||||||||| ||||||| |||||||| ||||| ||||||||||
Sbjct 890 CGATTGTTGATCGTATAGACTACAATATCCAAAATGTTTCTACGTCGGTTGAGGAAGGCT 949
Query 963 ATAAACAACTACAAAAGGCGGAGAGAACACAAAGAGAAGGAGCAATGGTGAAATGTGCAA 1022
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 950 ATAAACAACTACAAAAGGCGGAGAGAACACAAAGAGAAGGAGCAATGGTGAAATGTGCGA 1009
Query 1023 CTATACTCCTTGTACTCTGTTTGATCATGATTGTTCTTTTAATTCTTAAGAATATTTTGT 1082
| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 1010 CGATACTCCTTGTACTCTGTTTCATAATGATTGTTCTTTTAATCCTTAAGAATATTTTGT 1069
Query 1083 TTTAGTCATATGCCAACAATTT-AGAATGAAAAACAGCTTGTCTTGT-TTGTAACAAACA 1140
||||||||||| |||||||||| | || |||||||||||| |||| | |||||||||||
Sbjct 1070 TTTAGTCATATACCAACAATTTTAAAA-GAAAAACAGCTTTTCTTTTGTTGTAACAAACC 1128
Query 1141 GTAACC 1146
||||||
Sbjct 1129 GTAACC 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5