BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02200.3
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490351 jgi|Araly1|490351|fgenesh2_kg.6__3485__AT4G02200.1 1308 0.0
> Ahg490351 jgi|Araly1|490351|fgenesh2_kg.6__3485__AT4G02200.1
Length=1196
Score = 1308 bits (708), Expect = 0.0
Identities = 857/926 (93%), Gaps = 22/926 (2%)
Strand=Plus/Plus
Query 328 ATATGTCCGGTTTGTAGCAGACGAGTGAAGATGCATATGGTTGATCACATTACCACTCAG 387
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 285 ATATGTCCGGTTTGTAGCAGACGGGTGAAGATGCATATGGTTGATCACATTACCACGCAG 344
Query 388 CATAGAGATGTCTTCAAGAGACTTTACAAGGATGAGTCATATTCAGCATTTTCTCCAGGG 447
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 345 CATAGAGATGTCTTCAAGGGACTTTACAAGGATGAGTCATATTCAGCATTTTCTCCAAGG 404
Query 448 ACTAGGAAATACTTACAGTCTCTAATCGATGAGCCGTTGTCTACTAATCATACATCTAAA 507
|||| |||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 405 ACTAAGAAATACTTACAGTCTCTAATCGATGAGCCACTGTCTACTAATCGTATATCTAAA 464
Query 508 AGTGTTCTGGACCCATTATTATCATTTATATACAATCCGCCGTCACCAAAGAAGTCCAAG 567
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 465 AGTGTTCCAGACCCATTATTATCATTTATCTACAATCCGCCGTCACCAAACCAGTCCAAG 524
Query 568 CTTGTACAACCTGATTCATCTAGTGAAGCAAGCATGGAAGACAATAGCT-TAATAAGGGA 626
||||||| ||||||||||| |||||||||||||||||| ||| |||| | ||||||||
Sbjct 525 CTTGTACTGCCTGATTCATCAAGTGAAGCAAGCATGGAACTCAAGAGCTCT-ATAAGGGA 583
Query 627 TTCAACAGAAAAAGACTGGGAATCGCCGTCTCCCTTGTCAGATACAGAGCTACTAGAGAA 686
||||||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct 584 TTCAACAAAAAAAGACTGGAAATCGCTGTCTCCCTTGTCAGATATGGAGCTACTAGAGAA 643
Query 687 GGCAAAGAAGAGAGAGTTTGTACAAGGTTTAATATCATCAGCCATATTTGATCACATTTA 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GGCAAAGAAGAGAGAGTTTGTACAAGGTTTAATATCATCAGCCATATTTGATCACATTTC 703
Query 747 CAACTTCT-AA-GAGCATAAGTCTTTGTATATGAAACTCTCGCAAAGTAGTCT-G--TAC 801
|||||||| || ||| |||||| ||||||||||||||||| |||||||| || | ||
Sbjct 704 CAACTTCTGAAAGAGAATAAGTATTTGTATATGAAACTCTGGCAAAGTACACTAGAGTAG 763
Query 802 TCTG-TAGTATAAGCCAATGAGCTTCTGTTTATCGTCAAACTTCTACTTTGCTTCTTTAC 860
|| | || |||||||||||||||||||||||||| |||||||||||||||||| | | |
Sbjct 764 TC-GATAATATAAGCCAATGAGCTTCTGTTTATCTTCAAACTTCTACTTTGCT-CAT-A- 819
Query 861 AGCTCATAATCCTCAAGTCACTTGAGGTCGGAGTTTCCTTAACAACCACTTCTTGCGTAG 920
| | | |||| | | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 820 ATC-CTTAAT--T----T-ACTTGAGGTCGGAGTTTCCTAAACAACCACTTCTTGCGTAG 871
Query 921 TTTCACATCTAGAGCCAAGAAAGTTTTCGCCTTGAGTTTATCTTCAAGCAGATCACAAGC 980
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 872 TTTCACATCTAGAGCCAAGAAAGTTTTCGCTTTGAGTTCATCTTCAAGCAGATCACAAGC 931
Query 981 ATCCAATATAAGTTCATCGTCCATGTCTGGTAACGCTTGAATAGCCTCAACCGTGTCCTC 1040
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 932 ATCTAATATAAGTTCATCGTCCATGTCTGGTAACGCTTGAATAGCCTCAACCGTTTCCTC 991
Query 1041 TATTGACATGGTTTGGGTTTCATCAACTCGAGGCTT-TTTCGGGTTTATAGGGCTTGTAT 1099
||||| |||||||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 992 TATTGCCATGGTTTGGGTTTCATCAACTCGAGGCTTCTTT-GGGTTTACAGGGCTTGTAT 1050
Query 1100 CAGTATTAGCAAGTTGATCTCTTTTGTTCTTGGGGTCAAACAAAAGAGAGTTGCTATCTT 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 CAGTATTAGCAAGTTGATCTCTTTTGTTCTTGGGGTCAAACAAAAGAGAGTTGCTATCTT 1110
Query 1160 CTTCCTCAGCTGAAATAGACAAATCTGTAGTACCACTGGACTTAAATTCTTGGAATTCAG 1219
||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1111 CTTCCTCAGCTGATATAGACAAATCTGTAGTCCCACTGGACTTGAATTCTTGGAATTCAG 1170
Query 1220 TTTCAGGGTCAAACCAATCCATAGCT 1245
||||||||||||||||||||||||||
Sbjct 1171 TTTCAGGGTCAAACCAATCCATAGCT 1196
Score = 353 bits (191), Expect = 1e-96
Identities = 226/241 (94%), Gaps = 10/241 (4%)
Strand=Plus/Plus
Query 54 TGGATTCAGAATCAAAATGGAAGAAGATTTGTTGGGCATTTGTGGGTTTGATTCGTCGAA 113
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 45 TGGATTCAGAATC-TAATGGAAGAAGATTTGTTGGGCATTTGTGGGTTTGATTCTTCGAA 103
Query 114 GAAATATCGATTAGAAGAACTTGCCAAGTATCAGTCGGGTTCATGTATTGAGTTTGAAGA 173
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 104 GAAATATCGATTAGAAGAACTTGCCAAGTATCAGTCTGGTTCATGTATTGAGTTTGAAGA 163
Query 174 TG---A------TGATGAAATGGCAGTGGATTATCCATGCCCGTTTTGCTCAGATGATTA 224
|| | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 164 TGTGGAAGGAGATGATGAAATGGCAGTGGATTATCCATGCCCGTTTTGTTCAGATGATTA 223
Query 225 TGATTTAGTTGAATTGTGTCACCATATCGATGAGGAGCATCAACTAGACGCCAACAATGG 284
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 224 TGATTTAGTTGAATTGTGTCACCATATCGATGAGGAGCATCAACTAGACGCTAACAATGG 283
Query 285 G 285
|
Sbjct 284 G 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46509958740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5