BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02230.1
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490348 jgi|Araly1|490348|fgenesh2_kg.6__3482__AT4G02230.1 1288 0.0
Ahg470235 jgi|Araly1|470235|fgenesh2_kg.1__189__AT1G02780.1 582 1e-165
> Ahg490348 jgi|Araly1|490348|fgenesh2_kg.6__3482__AT4G02230.1
Length=799
Score = 1288 bits (697), Expect = 0.0
Identities = 767/801 (96%), Gaps = 4/801 (0%)
Strand=Plus/Plus
Query 1 CTTCTTCGCCAAAATCAGGGAGAGGCTAAAATGGTTTCGTTGAAGCTCCAGAAGCGTCTC 60
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTCCGCGAAAATCAGGGAGAGGCTAAAATGGTTTCGTTGAAGCTCCAGAAGCGTCTC 60
Query 61 GCATCCTCAGTACTCAAGTGCGGGAAGAGAAAAGTATGGCTCGACCCGAACGAAGGAAGT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GCATCCTCAGTACTCAAGTGCGGGAAGAGAAAAGTATGGCTCGATCCGAACGAAGGAAGT 120
Query 121 GATATCTCCATGGCCAATTCGCGTCAAAACATCAGGAAGCTTGTGAAGGATGGATTCATC 180
||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 121 GATATTTCCATGGCCAATTCGCGCCAAAACATCAGGAAACTTGTGAAGGATGGTTTCATC 180
Query 181 ATCAGGAAGCCAACGAAGATCCACTCACGATCCAGGGCACGTCAATTGAATATAGCCAAG 240
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCAGGAAGCCAACAAAGATACACTCACGATCCAGGGCACGTCAATTGAATATAGCCAAG 240
Query 241 AGAAAGGGACGTCACTCTGGTTATGGTAAGAGGAAGGGTACCCGAGAGGCAAGGTTGCCA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 AGAAAGGGACGTCACTCTGGTTATGGTAAGAGGAAGGGTACCCGAGAGGCAAGGCTGCCG 300
Query 301 ACAAAAGTTTTGTGGATGAGGAGGATGAGAGTGCTGAGGCGTCTGTTGAAGAAGTATAGG 360
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 ACAAAGGTATTGTGGATGAGGAGGATGAGAGTGCTGAGGCGTCTTTTGAAGAAGTATAGG 360
Query 361 GAGACCAAGAAGATTGACAGACATATGTACCATGACATGTACATGAAAGTCAAGGGAAAC 420
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGACGAAGAAGATTGACAGACACATGTACCATGACATGTACATGAAAGTCAAGGGAAAC 420
Query 421 GTCTTCAAGAACAAGCGTGTGTTGATGGAAAGTATTCACAAATCCAAGGCTGAGAAGGCT 480
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 421 GTCTTCAAGAACAAGCGTGTCTTGATGGAAAGTATTCACAAGTCAAAGGCTGAGAAGGCT 480
Query 481 AGAGAGAAGACATTGTCTGACCAGTTTGAGGCTAAGAGGGCTAAGAACAAGGCTAGCCGA 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGAGAGAAGACTTTGTCTGACCAGTTTGAGGCTAAGAGGGCTAAGAACAAGGCTAGCCGA 540
Query 541 GAGAGGAAACATGCTCGACGAGAGGAGCGTCTTGCCAAGGGTCCTGGAGGAGACATACCT 600
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 GAAAGGAAACACGCTCGACGAGAGGAGCGTCTTGCTAAGGGTCCTGGAGGAGACATACCT 600
Query 601 GCCGCTGCACCACCTGCACAAACCGCTGAGGTACCTGCGAAAAAGTCTAAGAAGTGAGAA 660
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCCCCTGCACCACCTGCCCAAACCGCTGAGGTACCTGCGAAAAAGTCTAAGAAGTGAGAA 660
Query 661 GCTTGCTCGGTAGTGAATTCTCTTATAAGCAGTGATTTTGAATGGTTTATGTGATAT-AG 719
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 661 GCTTGCTCGGTAGTGAATTCTCTTATAAGCAGTGATTTTGAATGGTTTTTGTGAT-TCAG 719
Query 720 CTTTGTGAAAACTCTTTATTTGTC-ACAAATATGAGAACCTTTGTCAGTAGTTCGTACTG 778
||||||||||||||||| |||| | |||||||||||||||||||||||||||| ||||||
Sbjct 720 CTTTGTGAAAACTCTTTCTTTG-CGACAAATATGAGAACCTTTGTCAGTAGTTTGTACTG 778
Query 779 TTTCAGGAGACTTAATTCTAT 799
|||| |||| |||||||||||
Sbjct 779 TTTCGGGAGCCTTAATTCTAT 799
> Ahg470235 jgi|Araly1|470235|fgenesh2_kg.1__189__AT1G02780.1
Length=966
Score = 582 bits (315), Expect = 1e-165
Identities = 497/584 (85%), Gaps = 16/584 (3%)
Strand=Plus/Plus
Query 18 GGGAGAGGCTAAAATGGTTTCGT-TGAAGCTCCAGAAGCGTCTCGCATCCTCAGTAC-TC 75
|||||| || ||||||||||| | |||||||||||||||| ||||| | ||||| | |
Sbjct 62 GGGAGAAGCAAAAATGGTTTC-TCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGT-CATG 119
Query 76 AAGTGCGGGAAGAGAAAAGTATGGCTCGA-CCCGAACGAAGGAAGTGATATCTCCATGGC 134
|||||||||||| | ||||| |||||||| ||| || ||| | || |||||||||||
Sbjct 120 AAGTGCGGGAAGGGCAAAGTTTGGCTCGATCCC-AATGAAAGCTCCGACATCTCCATGGC 178
Query 135 CAATTCGCGTCAAAACATCAGGAAGCTTGTGAAGGATGGATTCATCATCAGGAAGCCAAC 194
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 179 CAATTCCCGCCAAAACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAAC 238
Query 195 GAAGATCCACTCACGATCCAGGGCACGTCAAT-TGAATATAGCCAAGA-GAAAGGGACGT 252
||||| ||||| || ||||| || || ||| |||| || ||||||| ||| ||| |||
Sbjct 239 CAAGATTCACTCTCGTTCCAGAGCTCG-CAAAATGAAGATTGCCAAGATGAA-GGGTCGT 296
Query 253 CACTCTGGTTATGGTAAGAGGAAGGGTACCCGAGAGGCAAGGTTGCCAACAAAAGTTTTG 312
|||||||| || |||||||||||||||||||| || || |||||||||||||| || ||
Sbjct 297 CACTCTGGATACGGTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTG 356
Query 313 TGGATGAGGAGGATGAGAGTGCTGAGGCGTCTGTTGAAGAAGTATAGGGAGACCAAGAAG 372
|||||| | |||||| | || |||||||||||||||||||| || | ||| | ||||||
Sbjct 357 TGGATGCGCAGGATGCGTGTTCTGAGGCGTCTGTTGAAGAAATACCGAGAGTCGAAGAAG 416
Query 373 ATTGACA-GACATATGTACCATGACATGTACATGAAAGTCAAGGGAAACGTCTTCAAGAA 431
||||||| | || ||||||||||||||||||||| || ||||| || || ||||||||
Sbjct 417 ATTGACAAG-CACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAA 475
Query 432 CAAGCGTGTGTTGATGGAAAGTATTCACAAATCCAAGGCTGAGAAGGCTAGAGAGAAGAC 491
||||||||| |||||||| ||||| ||||| || ||||||||||||||||||||||||||
Sbjct 476 CAAGCGTGTCTTGATGGAGAGTATCCACAAGTCTAAGGCTGAGAAGGCTAGAGAGAAGAC 535
Query 492 ATTGTCTGACCAGTTTGAGGCTAAGAGGGCTAAGAACAAGGCTAGCCGAGAGAGGAAACA 551
|||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 536 TTTGTCTGATCAGTTTGAGGCTAAGAGGGCAAAGAACAAGGCTAGCCGAGAAAGGAAGCA 595
Query 552 TGCTCG-ACGAGAGGAGCGTCTT-GCCAAGGGTCCTGGAGGAGA 593
|||| | | ||||||||||| || || |||||||| || |||||
Sbjct 596 TGCTAGGA-GAGAGGAGCGT-TTAGCTAAGGGTCCCGGTGGAGA 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32518848201
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5