BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G02250.1

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943509 jgi|Araly1|943509|scaffold_604053.1                        616    6e-176


> Ahg943509 jgi|Araly1|943509|scaffold_604053.1
Length=480

 Score =  616 bits (333),  Expect = 6e-176
 Identities = 361/375 (96%), Gaps = 0/375 (0%)
 Strand=Plus/Plus

Query  109  GCAACCGCAACCGCACCAAAACTAGGCGTGATCGCGTTAAGCATCGCGTCCTCAAATGCT  168
            ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct  86   GCAACCGCAACCGCACCAAAACTCGGCGTGATCGCTTTAAGCATCGCGTCCTCGAATGCT  145

Query  169  TCGGACACATCTTTCTACATCAAAGCCAAACTAAAGCAAAAGAACCTCGAGCCGGCTTTA  228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  146  TCGGACACATCTTTCTACATCAAAGCCAAACTAAAGCAAAAGAACCTCGAGCCGGCTTTA  205

Query  229  GAAGACACCCTCGACGATTGCTCTAAGAATTACTTAGATGCGGTCGCGCAGCTCGACGAT  288
            |||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct  206  GAAGACACCCTCGATGATTGCTCTAAGAATTACTTGGACGCGGTCGCGCAGCTCGACGAT  265

Query  289  TCTCTAGCCGCTTTGATGCAAAACTCGTTCATCGACGTCGATATTTGGCTCAACACCGCG  348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || 
Sbjct  266  TCTCTAGCCGCTTTGATGCAAAACTCGTTCATCGACGTCGATATTTGGCTCAATACGGCC  325

Query  349  ATAAGCGACGGTGAGGCTTGTGAAAACGCTTTGAACGATCGTGCCGGTAATGATGCTGAG  408
            || |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct  326  ATTAGCGACGGCGAGGCTTGTGAAACCGCTTTGAACGATCGTGCCGGTAACGATGCTGAG  385

Query  409  CTTGCTCGTAGGAACACAAACTTGTTGAAGCTTTGCAAGGATGCTCTTCTCATTAACACT  468
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  386  CTTGCTCGTAGGAACACAAACTTGTTGAAGCTTTGCAAGGACGCTCTTCTCATTAACACT  445

Query  469  ATTTTAACTCCCTAA  483
            |||||||||||||||
Sbjct  446  ATTTTAACTCCCTAA  460


 Score =  119 bits (64),  Expect = 2e-26
 Identities = 67/68 (99%), Gaps = 1/68 (1%)
 Strand=Plus/Plus

Query  1   ATGAAAATGGCCGGAAGGATCTTTCTCCTTTTCCTCTCCGTCTACGTCACGGTGGCCATC  60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  23  ATGAAAATGGCCGGAAGGATCTTTCTCCTTTTCCTCTCCGTCTACGTCACGGTGGCCATC  82

Query  61  GCCGACAA  68
           |||| |||
Sbjct  83  GCCG-CAA  89



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17513415351


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5