BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02270.1
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490343 jgi|Araly1|490343|fgenesh2_kg.6__3477__AT4G02270.1 977 0.0
> Ahg490343 jgi|Araly1|490343|fgenesh2_kg.6__3477__AT4G02270.1
Length=725
Score = 977 bits (529), Expect = 0.0
Identities = 680/749 (91%), Gaps = 25/749 (3%)
Strand=Plus/Plus
Query 1 CTTGCTTAAGCAACATATAAACAAAGCAAGCaaaaaaaaaaaaTGGCTTTCTCACGCCTC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 CTTGCTTAAGCAACATATAAACAAGGCAAGCAAAAAAAAAAAATGGCTTTCTCACGCCTC 60
Query 61 TCATTTGCAGCTTCTCTCATCGTCTTCTCATCTCTAATCATATCTTCAGTTGCTTATTAC 120
|||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATTTGCTGCTTCTCTTGTAGTCTTCTCATCTCTAATCATATCTTCAGTTGCTTATTAC 120
Query 121 GGCAATGAAGCTGACCCGGAGACCGGAAAATTGATTCCCATCGCCGTTGAAGGGATCATC 180
||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 121 GGCAATGAAGCCGACCCAGAGACCGGGAAATTGATTCCCATCGCCGTTGAAGGGGTCATC 180
Query 181 AAGTGCAAGTCCGGTGGCAAAACTTACCCAATTCAAGGTGCAACGGCAAGAATTGCGTGT 240
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 ATGTGCAAGTCCGGTGGCAAAACTTACCCAATTCAAGGTGCAACGGCAAGAATTGCATGT 240
Query 241 GTGAAGGTCGATGCATATGGGAATGAGTTAGTTCCAATATCGATATTGAGCAGCAAAACT 300
|||||||| ||||| |||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 241 GTGAAGGTGGATGCTTATGGGAAAGAGATAGTTCCAATATCGATAATGAGCAGCAAAACT 300
Query 301 GATGCTAAAGGTTACTTCATCGCCACGATATTCCCTTCGCAGCTTCGTGCAGGAAGGACA 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATGCTAAAGGTTACTTCTTCGCCACGATATTCCCTTCGCAGCTTCGTGCAGGAAGGACA 360
Query 361 GTGACCAAATGCAAAACTTACCTTTACAAATCTCCACTCGCTGATTGCGATTTTCCGACC 420
||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 361 GTGACCAAATGCAAAGCTTACCTTTACAAATCTCCAATTGCTGATTGCGATTTCCCGACC 420
Query 421 GATGTGAACAAAGGTGTTAGAGGACAGCCATTGAGCACGTACCGTATTCTTCAAGACAAG 480
||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||
Sbjct 421 GATGTGAACAAAGGTGTTAGAGGACAGACATTGAGCAAGTACCGTGTTCTTGAAGACAAG 480
Query 481 AGCTTCAAGCTTTACTGGGCTGGTCCTTTCTTCTACACGTCTGAACCTACTTACTACTAA 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 AGCTTCAAGCTTTACTGGGCTGGTCCTTTCTTCTACACCTCTGAACCTACTTACTACTAA 540
Query 541 TTATGATCTTCTGATGAACATGAAATTTAACATGTTCTTGGAGAATC-ATTTTTCGTTTG 599
|| ||||||| |||| ||| |||||||||||||||||||| ||| | | | | |||
Sbjct 541 TTCTGATCTTTTGATCAACGTGAAATTTAACATGTTCTTG-AGA-TGGAGAAT-C-TTT- 595
Query 600 TTTGATTATTCGTCGTATAACGTTGTCTGCAAAATGATCTAAGAGTTTGTTTTCTTTATC 659
| ||| | || | | | || ||||||| ||||||||||||||||||| |
Sbjct 596 TC--ATT-T--GT--T-TGA--TT------AAAATGAGCTAAGAGTTTGTTTTCTTTGT- 638
Query 660 TTATATTTCATGTTGCATATATGACTTTGTCATGTATCTTATGTTTTAATATTTTCTTGG 719
|| |||||||||| | ||||||||||||||||||||| |||||||||||| |||| ||||
Sbjct 639 TTCTATTTCATGTCGTATATATGACTTTGTCATGTATGTTATGTTTTAATTTTTT-TTGG 697
Query 720 TAAATGTATGGGTTTATTGGATTTGTTCT 748
|||||||||| |||||||||||||||||
Sbjct 698 TAAATGTATGT-TTTATTGGATTTGTTCT 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27562868991
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5