BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02290.1
Length=1939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490341 jgi|Araly1|490341|fgenesh2_kg.6__3475__AT4G02290.1 2985 0.0
Ahg918934 jgi|Araly1|918934|scaffold_100215.1 1127 0.0
> Ahg490341 jgi|Araly1|490341|fgenesh2_kg.6__3475__AT4G02290.1
Length=1905
Score = 2985 bits (1616), Expect = 0.0
Identities = 1837/1938 (95%), Gaps = 37/1938 (2%)
Strand=Plus/Plus
Query 6 ttttttttCCTCTATAAAAAGCTGAGCCACTTCCTCTGTTTCCCACAAAGCAGCTTCTGC 65
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TTTTTTTTCCTCTATAAAAAGCTGAGCCACTTCCTCTGTTTCCCACAAACCAGCTTCTGC 60
Query 66 AACCTATTCGTTGGTTGGTTAATAGAAGctctctttctctgtctgtctttctctctcaga 125
|| ||||||||||||||||||||||||| ||| |||| || || ||||||||||
Sbjct 61 AATCTATTCGTTGGTTGGTTAATAGAAG--CTC--TCTC--TC--TC---CTCTCTCAGA 109
Query 126 gaaatggctcttcttctagtttcttcttcctcctcCTATGCCCTCAGAGTCACCAttttc 185
|||||||||||||||||| || ||||| || ||| | |||||||||||||||||
Sbjct 110 GAAATGGCTCTTCTTCTA--TT-TTCTT-CT--TCC--T----TCAGAGTCACCATTTTC 157
Query 186 ttgtctttcttcttctttctctgcaatggcttctcttaccctactacttcttctcttttc 245
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 158 CTGTCTTTCTTCTTCTTTCTCTGCAATGGCTTCTCTTA-CC--CTACTTCTTCTCTTTTC 214
Query 246 AACACCCATCACCATCGTCACCACTTGGCCAAGCACAACTACAAAGATGCTCTCACTAAA 305
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 215 AACACACATCACCATCGTCACCACTTGGCCAAGCACAACTACAAAGACGCTCTCACCAAA 274
Query 306 TCAATCCTCTTCTTTGAAGGCCAAAGGTCAGGGAAACTTCCTTCTAACCAGAGAATGAGT 365
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 275 TCAATCCTCTTCTTTGAAGGCCAAAGGTCTGGGAAACTTCCTTCTAACCAGAGAATGAGT 334
Query 366 TGGAGAAGAGACTCTGGTCTCTCTGATGGCTCTGCTCTTCATGTGGATTTGGTTGGAGGG 425
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TGGAGAAAAGACTCTGGTCTCTCTGATGGCTCTGCTCTTCATGTGGATTTGGTTGGAGGA 394
Query 426 TACTATGATGCAGGAGACAATATCAAATTTGGTTTCCCAATGGCATTCACAACCACAATG 485
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 395 TACTATGATGCAGGAGACAACATCAAATTTGGATTCCCAATGGCATTCACAACCACAATG 454
Query 486 CTT-TCATGGAGTGTAATTGAATTCGGTGGACTCATGAAATCTGAATTACAAAACGCTAA 544
|| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 455 -TTATCATGGAGTGTAATCGAATTTGGTGGTCTCATGAAATCTGAATTACAAAACGCTAA 513
Query 545 AATAGCGATTCGTTGGGCTACTGATTATCTCCTCAAAGCCACTTCACA-ACCTGACACAA 603
|||||||||||||||||||||||||||||| ||||||||||||||| | ||||| || |
Sbjct 514 AATAGCGATTCGTTGGGCTACTGATTATCTTCTCAAAGCCACTTCA-AGTCCTGATACCA 572
Query 604 TCTATGTTCAAGTTGGTGATGCTAATAAAGACCATTCTTGTTGGGAAAGACCTGAAGACA 663
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 573 TTTATGTTCAAGTTGGTGATGCTAATAAAGACCATTCTTGTTGGGAAAGACCAGAAGACA 632
Query 664 TGGATACTGTAAGAAGTGTGTTTAAAGTTGACAAGAACATTCCTGGTTCTGATGTCGCCG 723
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 633 TGGATACTGTAAGAAGTGTGTTTAAAGTTGACAAGAACACTCCTGGTTCTGATGTCGCCG 692
Query 724 CTGAAACCGCCGCTGCTCTAGCCGCCGCCGCCATTGTATTCAGAAAATCTGATCCTTCTT 783
||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 693 CTGAAACCGCCGCCGCTCTAGCCGCAGCCGCTATTGTTTTCAGAAAGTCTGATCCTTCTT 752
Query 784 ACTCCAAAGTCCTCCTCAAACGAGCCATCAGTGTTTTTGCATTTGCGGACAAATACAGAG 843
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 753 ACTCCAAAGTCCTCCTCAAACGAGCCATCAGGGTTTTTGCATTTGCGGACAAATACAGAG 812
Query 844 GAACTTATAGTGCAGGATTAAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTT 903
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 813 GAACTTATAGTGCAGGATTGAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTT 872
Query 904 ATCAGGATGAATTGTTGTGGGGAGCTGCTTGGTTACAAAAAGCGACAAAGAATATAAAAT 963
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 873 ATCAGGATGAATTGTTGTGGGGAGCTGCTTGGTTACAAAAAGCCACAAAGAATTTAAAAT 932
Query 964 ATTTGAATTACATAAAAATCAATGGACAAATCCTTGGAGCTGCTGAATATGATAACACTT 1023
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 933 ATTTGAATTACATAAAAATTAATGGACAAATCCTTGGAGCTGCTGAATATGATAACACTT 992
Query 1024 TTGGTTGGGATAACAAGCACGCTGGTGCCAGAATCCTTCTTACTAAGGCATTTTTGGTTC 1083
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 993 TTGGTTGGGATAACAAGCACGCTGGAGCCAGAATTCTTCTTACAAAGGCATTTTTGGTTC 1052
Query 1084 AGAATGTGAAGACACTTCATGAATACAAAGGTCATGCTGATAATTTCATCTGCTCTGTTA 1143
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1053 AGAATGTGAAGACACTTCATGAGTACAAAGGTCATGCTGATAATTTCATTTGCTCTGTTA 1112
Query 1144 TTCCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAGGTGGATTATTGTTTAAAATGG 1203
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1113 TTCCTGGAGCTCCTTTCTCTTCTACTCAGTACACCCCAGGTGGATTATTGTTTAAAATGG 1172
Query 1204 CAGACGCCAACATGCAATACGTGACGTCAACATCGTTCTTGCTCTTAACCTATGCCAAAT 1263
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1173 CAGACGCCAACATGCAATATGTGACGTCAACATCGTTCTTGCTCTTAACCTACGCCAAAT 1232
Query 1264 ACTTAACCTCCGCCAAAACCGTCGTCCATTGCGGTGGCTCCGTCTACACTCCCGGTCGTC 1323
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1233 ACTTAACCTCCGCCAAAACAGTCGTCCATTGCGGTGGCTCCGTCTACACTCCCGGTCGCC 1292
Query 1324 TTCGCTCCATCGCCAAAAGACAGGTGGATTATCTTCTTGGAGACAACCCATTAAGAATGT 1383
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1293 TCCGCTCCATCGCCAAAAGACAGGTGGATTATCTACTTGGAGACAACCCATTAAGAATGT 1352
Query 1384 CTTACATGGTTGGTTACGGTCCAAAATTCCCACGGAGAATCCACCACCGTGGCTCCTCAT 1443
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
Sbjct 1353 CTTACATGGTTGGTTACGGTCCGAAATTCCCACGGCGAATCCACCACCGTGGCTCCTCTT 1412
Query 1444 TACCTTGTGTTGCAAGCCACCCGGCCAAGATCCAATGCCACCAAGGATTTGCAATCATGA 1503
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1413 TACCTTGTGTTGCAAGCCACCCGGCCAAGATCCAATGCCACCAAGGCTTTGCAATCATGA 1472
Query 1504 ACTCTCAATCTCCAAACCCTAACTTCCTTGTTGGTGCAGTCGTTGGTGGTCCGGACCAGC 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 ACTCTCAATCTCCAAACCCTAACTTCCTTGTTGGTGCAGTCGTTGGTGGTCCGGACCAGC 1532
Query 1564 ATGATCGCTTCCCAGACGAACGGTCTGATTACGAGCAGTCCGAGCCGGCTACTTACATCA 1623
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1533 ATGATCGCTTCCCGGACGAACGGTCCGATTACGAGCAGTCCGAGCCGGCTACTTACATCA 1592
Query 1624 ATTCACCACTCGTTGGAGCTCTTGCCTACTTCGCCCACGCCTATGGTCAACTCTAGTTTA 1683
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1593 ATGCACCACTCGTTGGAGCTCTTGCCTACTTCGCTCACGCCTATGGTCAACTCTAGTTTA 1652
Query 1684 GTAACGAGTGTGTTAGTTTAAGTAAAAATAAAAATGAAGGAAGTTTTATCTTTGTTTTTA 1743
|||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1653 GTAATGAGTGTGTTAGTTTAAGTAAAAATAAAAATGAAGGAA-TT--ATCTTTGTTTTTA 1709
Query 1744 CTTTTATTTGTTAGTAATGTAGTGGACCGAAAATCGGATCACAAGTGGACATTGGTCCGA 1803
|||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1710 CTTTTATTTGTTAGTA-TATAGTGGACCGAAAATCGGATCACAAGAGGACATTAGTCCGA 1768
Query 1804 GGGATGGTTTATTTGGTTCGTTATAATATAACGTCAAGTGTAATCTTATTGTGGTTATTA 1863
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1769 GGGATGGTTTATTTGGTTCGTTATTATATAACGTCAAGTGTAATCTTATCGTGGTTATTA 1828
Query 1864 ATGTTATCATCCTATTAATT--ACTATATCCATGTCGTTAATTTTTGATATGTTTATATG 1921
||| ||| ||||||||||| ||||||||||||||||||| ||||| ||||||||| ||
Sbjct 1829 ATGCTATTGTCCTATTAATTGTACTATATCCATGTCGTTAAATTTTG-TATGTTTATGTG 1887
Query 1922 ATTTTTCATATTTTTGGG 1939
|||||| |||||||||||
Sbjct 1888 ATTTTTGATATTTTTGGG 1905
> Ahg918934 jgi|Araly1|918934|scaffold_100215.1
Length=1547
Score = 1127 bits (610), Expect = 0.0
Identities = 1165/1426 (82%), Gaps = 66/1426 (5%)
Strand=Plus/Plus
Query 252 CAT-CACCATCGTCACCACTTGGCCAAGCACAACTACAAAGATGCTCTCACTAAATCAAT 310
||| ||||||||||||||| | | ||| ||||| |||||||| |||||| | || || ||
Sbjct 117 CATCCACCATCGTCACCACCTCGACAACCACAATTACAAAGACGCTCTCTCCAAGTCCAT 176
Query 311 CCTCTTCTTTGAAGGCCAAAGGTCAGGGAAA-CTTCCTTCTAACCAGAGAATGAGTTGGA 369
|||||||| ||||| ||||| || ||||| |||||| | |||||||| |||| |||||
Sbjct 177 TCTCTTCTTCGAAGGTCAAAGATC-CGGAAAGCTTCCTCCAAACCAGAGGATGACTTGGA 235
Query 370 GAAG-AGACTCTGGTCTCTCTGATGGCTCTGCTCTTC-ATGTGGATTTGGTTGGAGGGTA 427
|||| | ||||||| ||||||||||| ||||| | || | ||||||||||| ||||| ||
Sbjct 236 GAAGTA-ACTCTGGCCTCTCTGATGGTTCTGC-CCTCAACGTGGATTTGGTGGGAGGATA 293
Query 428 CTATGATGCAGGAGACAATATCAAATTTGGTTTCCCAATGGCATTCACAACCACAATGCT 487
||| |||||||| |||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 294 CTACGATGCAGGGGACAATATGAAGTTTGGATTCCCAATGGCATTCACAACCACAATGCT 353
Query 488 TTCATGGAGTGTAATTGAATTCGGTGGACTCATGAAATCTGAATTACAAAACGCTAAA-A 546
||||||||| ||||||| || ||||| |||||||||||||| |||| |||||||||| |
Sbjct 354 CTCATGGAGTTTAATTGAGTTTGGTGGTCTCATGAAATCTGAGTTACCAAACGCTAAAGA 413
Query 547 TAGC-GATTCGTTGGGCTACTGA-TTATCTCCTCAAAGCCACTTCACAACCTGACACAAT 604
|| | |||||||||| ||||| || ||||||||||||||||||||| ||||| || ||
Sbjct 414 C-GCAG-TTCGTTGGGCCACTGACTT-TCTCCTCAAAGCCACTTCACATCCTGATACCAT 470
Query 605 CTATGTTCAAGTTGGTGATGCTAATAAAGACCATTCTTGTTGGGAAAGACCTGAAGACAT 664
|||||||| ||||||||| |||| | |||||| | |||||||| ||||| ||||||||
Sbjct 471 TTATGTTCAGGTTGGTGATCCTAACATGGACCATGCGTGTTGGGAGAGACCAGAAGACAT 530
Query 665 GGATACTGTAAGAAGTGTGTTTAAAGTTGACAAGAACATTCCTGGTTCTGATGTCGCCGC 724
|||||| |||||||||||||||||| |||||||||| ||||||||||||| ||||||
Sbjct 531 GGATACACCAAGAAGTGTGTTTAAAGTCGACAAGAACAATCCTGGTTCTGATATCGCCGG 590
Query 725 TGAAACCGCCGCTGCTCTAGCCGCCGCCGCCATTGTATTCAGAAAAT-CTGATCCTTCTT 783
||||| ||| || ||||| ||||| || | ||||| ||| | | || | ||||||||||
Sbjct 591 TGAAATCGCTGCCGCTCTTGCCGCTGCTTCAATTGTTTTCGGGAGATGC-GATCCTTCTT 649
Query 784 ACTCCAAAGTCCTCCTCAAACGAGCCATCA-GTGTTTTTGCATTTGCGGACAAATACAGA 842
||||||| |||||||| |||||||||| | | |||||| ||||||||||||||||||||
Sbjct 650 ACTCCAATCTCCTCCTCCAACGAGCCATTACG-GTTTTTACATTTGCGGACAAATACAGA 708
Query 843 GGAACTTATAGTGCAGGAT-TAAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGG 901
||| | || |||||||| | | || || ||||||||||| || || |||||||||||
Sbjct 709 GGACCCTACAGTGCAGG-TCTGGCCCCAGAAGTTTGTCCATTCTACTGTTCTTACTCTGG 767
Query 902 TTATCAGGATGAATTGTTGTGGGGAGCTGCTTGGTTACAAAAAGCGACAAAGAATATAAA 961
|| ||||| |||||||| |||||||||||||||||||| ||||| ||||| || ||
Sbjct 768 CTACCAGGACGAATTGTTATGGGGAGCTGCTTGGTTACACAAAGCAACAAATAACCCAAC 827
Query 962 ATATTTGAATTACATAAAAA-TCAATGGACAAATCCTTGGAGCTGCTGAATATGATAACA 1020
|||| | |||||||| ||| | |||||||||||||||||||||| ||| | ||||||||
Sbjct 828 ATATCTCAATTACATCAAAGCT-AATGGACAAATCCTTGGAGCTGATGAGTTTGATAACA 886
Query 1021 CT-TTTGGTTGGGATAACAAGCACGCTGGTGCCAGAATCCTTCT-TACTAAGGCATTTT- 1077
| ||| |||||||||| ||||||| |||||| ||||||||||| | | |||| | |||
Sbjct 887 -TGTTTAGTTGGGATAATAAGCACGTTGGTGCTAGAATCCTTCTCTCC-AAGG-AGTTTC 943
Query 1078 TGGTTCAGAATGTGAAGACACTTCATGAATACAAAG-GTCATGCTGATAATTTCATCTGC 1136
|| ||||||| |||||| ||||| | |||||||||| | |||||||||| |||||| |||
Sbjct 944 TGATTCAGAAAGTGAAGTCACTTGAAGAATACAAAGAG-CATGCTGATAGTTTCATTTGC 1002
Query 1137 TCTGTTATT-CCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAGGTGGATTATTGTT 1195
|||||| || |||||||| | | |||||| | || || || |||||||| |||||||
Sbjct 1003 TCTGTT-TTACCTGGAGC-C-TC-CTCTTC--C-CAATACACCCCAGGTGGGCTATTGTT 1055
Query 1196 TAAAATGGC--AGACGCCAACATGCAATACGTGACGTCAACATCGTTCTTGCTCTTAACC 1253
|| |||| ||| || ||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1056 CAAGATGGGTGAGA-GC-AACATGCAATACGTGACATCTACATCGTTCTTGCTCTTGACC 1113
Query 1254 TATGCCAAATACTTAACCTCCGC-CAAAACCGTCG-TCCATTGCGGTGGCTCCGTC-TAC 1310
|| |||||||| |||||||| || | | | |||| | |||||||||| |||||| | |
Sbjct 1114 TACGCCAAATATTTAACCTCTGCTCGCA-CTGTCGCTT-ATTGCGGTGGTTCCGTCGT-C 1170
Query 1311 ACTCCCGGTC-GTCTTCGCTCCATCGCCAA-AAGACAGGTGGATTATCTTCTTGGAGACA 1368
|| ||| | | | || ||||||||||| | || ||||||||||||||| ||||||||||
Sbjct 1171 AC-CCCTGCCCGCCTCCGCTCCATCGCTAGGAA-ACAGGTGGATTATCTACTTGGAGACA 1228
Query 1369 ACCCATT-AAGAATGTCTTACATGGTTGGTTACGGTCCAAAAT-TCCCACGGAGAATCCA 1426
|||| || |||| |||| |||||||||||||| |||| |||| ||| ||| | || ||
Sbjct 1229 ACCCGTTGAAGA-TGTCATACATGGTTGGTTATGGTCTTAAATATCC-ACGTCGGATTCA 1286
Query 1427 CCACCGTGGCTCCTCAT-TACCTTGTGTTGCAAG-CCACCCGGCCAAGATCCAATGCCAC 1484
||| |||||||| || | | || | |||||| | ||||||| ||| |||||| ||||||
Sbjct 1287 CCAACGTGGCTCATC-TCTCCCCTCCGTTGCA-GTCCACCCGACCAGGATCCAGTGCCAC 1344
Query 1485 CAAGGATT-TGCAATCATGAACTCTCAATCTCCAAACCCTAACTTCCTT-GTTGGTGCAG 1542
| || || | || | | | |||||||||||| ||||||||| | || || |||||||
Sbjct 1345 GATGGCTTCTCCA-TGTTTACCTCTCAATCTCCTAACCCTAACGAC-TTAGTCGGTGCAG 1402
Query 1543 TCGTTGGTGGTCCGGACCAGCATGATCGCTTCCCAGACGAACGGTCTGATTACG-AGCAG 1601
|||| |||||||| |||||| | || | ||||| ||||||||||| || || | | | |
Sbjct 1403 TCGTCGGTGGTCCCGACCAGAACGACCAATTCCCTGACGAACGGTCCGACTATGGA-CGG 1461
Query 1602 TCCGAGCCGGCTACTTACATCAATTCACCACTCGTTGGAGCTCTTG 1647
|||||||| || |||||||| || | ||||| ||||||||| |||
Sbjct 1462 TCCGAGCCAGCAACTTACATTAACGCTCCACTTGTTGGAGCT-TTG 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72866638685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5