BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02300.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895772 jgi|Araly1|895772|Al_scaffold_0006_3768 2296 0.0
> Ahg895772 jgi|Araly1|895772|Al_scaffold_0006_3768
Length=1596
Score = 2296 bits (1243), Expect = 0.0
Identities = 1481/1597 (93%), Gaps = 11/1597 (1%)
Strand=Plus/Plus
Query 10 AATCATCCAATTAGAGAAAAACCAAAACACATTATTTTCAACTTACTGTCACTAATCTTT 69
||| |||||| |||||||| |||| ||||| |||||||| |||||| || ||||||||
Sbjct 4 AATAATCCAAATAGAGAAAGCCCAATTCACATAATTTTCAAATTACTGCCATTAATCTTT 63
Query 70 TTCCTAATCTTCTTATCCACCGTTGTTTCATCTCAATCACCATCATACACCACTCACAAA 129
||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 64 TTCATAATCTTCTTATCCACCGTTGTTTCATCTCATTCACCATCCTACACCACTCACAAA 123
Query 130 ACCCAGCGTTTAACCGAAACCAAAACCATCCCCGAGCTTATCATCGCGGACTTAAACCTA 189
|| || |||||||||||||||||||||||||| ||||| || ||||| ||||||||||||
Sbjct 124 ACGCATCGTTTAACCGAAACCAAAACCATCCCTGAGCTCATAATCGCCGACTTAAACCTA 183
Query 190 ACCATCTTAAAGGTTAATCTCGCTTCCTCCAACTTCTCCGACCTCCAAACCCGTCTTTTT 249
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
Sbjct 184 ACCATCTTAAAGGTTAATCTCGCTTCTTCCAACTTCTCTGACCTCCAAACCCGTCTTGGT 243
Query 250 CCAAACCTAACCCACTATGAACGTTGCGCATTCGAAGACTGTCTCGGGCTACTCGATGAC 309
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CCAAACCTAACCCACTGTGAACGTTGCGCATTCGAAGACTGTCTCGGGCTACTCGATGAC 303
Query 310 ACCATCTCCGACCTCGAAACCGCAGTCTCCGATCTTCGATCTTCCTCTCTTGAGTTCAAC 369
||||||||||||||| |||||||| ||||| | || |||||||||||| |||||||||||
Sbjct 304 ACCATCTCCGACCTCAAAACCGCAATCTCCAAACTCCGATCTTCCTCTTTTGAGTTCAAC 363
Query 370 GACATCAGCATGTTGCTCACCAACGTCATGACATACCAAGATACGTGTCTTGATGGTTTC 429
||| |||| ||||||||| ||||| ||||||| ||||||| ||||||||||||||||||
Sbjct 364 GACGTCAGTTTGTTGCTCAGCAACGCCATGACAGACCAAGACACGTGTCTTGATGGTTTC 423
Query 430 TCGACAAGTGACAATGAGAATAATAATGATATGACGTATGAATTGCCTGAGAACTTGAAG 489
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 424 TCGACAAGCGACAATGAGAATAATAATGATATGATGTATGAATTGCCTGAGAACTTGAAG 483
Query 490 GAGATCATCTTAGACATCTCTAACAACCTTAGCAACTCCCTCCATATGCTTCAGGTGATT 549
|||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 484 GAGAGCATCTTAGACATCTCTAACGACCTTAGCAACTCCCTCGATATGCTTCAGATGATC 543
Query 550 TCCA-GGAAGAAACCT-TCCCCGA-AATCATCAGAAGTTGACGTTGAGTACCCGAGTTGG 606
| || ||||| || || | ||| | ||||||| |||||||||||||||||||||||||||
Sbjct 544 T-CAGGGAAG-AA-CTCTACCCTAGAATCATCTGAAGTTGACGTTGAGTACCCGAGTTGG 600
Query 607 CTCTCAGAGAATGACCAGAGACTCCTTGAGGCTCCGGTACAAGAG---ACCAATTACAAT 663
||||| |||||||| ||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 601 GTCTCAAAGAATGACAAGAGACTCCTTGAGGCTCCAGTACAAGAGATCACCAATTTTAAT 660
Query 664 CTCTCGGTGGCGATTGATGGTACCGGAAACTTCACAACCATTAATGATGCCGTCTTTGCT 723
||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 661 CTCTCAGTGGCGATTGATGGTACCGGAAACTTCACAACCATTAATGCCGCCGTCTCTGCC 720
Query 724 GCTCCCAACATGAGCGAAACTAGATTTATTATCTATATAAAAGGTGGGGAATATTTTGAG 783
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCTCCCAACAAGAGTGATACTAGATTTATTATCTATATAAAAGGTGGGGAATATTTTGAG 780
Query 784 AACGTCGAATTACCTAAGAAGAAGACAATGATAATGTTTATCGGAGATGGTATCGGAAAA 843
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AACGTCGAATTACCGAAGAAGAAGACAATGATAATGTTTATCGGAGATGGTATCGGAAAA 840
Query 844 ACAGTCATAAAAGCAAACCGCAGCCGCATTGATGGATGGTCAACATTTCAAACTCCTACC 903
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 841 ACAGTCATAAAAGCAAACCGCAGCCGCATTGATGGATGGTCAACATTTCAAACTGCTACC 900
Query 904 GTAGGCGTGAAAGGTAAAGGCTACATAGCAAAGGACATATCATTCGTGAATTCTGCAGGA 963
|| ||||||||||||||||| | |||||| ||||||||||| |||||||||| ||| |||
Sbjct 901 GTTGGCGTGAAAGGTAAAGGTTTCATAGCTAAGGACATATCCTTCGTGAATTTTGCTGGA 960
Query 964 CCGGCCAAAGCACAGGCTGTGGCCTTTCGAAGCGGCTCTGATCACTCTGCCTTTTACCGT 1023
| |||||||| ||| || ||||| || ||||||||||||||||||||||||||||| |||
Sbjct 961 CTGGCCAAAGAACAAGCCGTGGCATTGCGAAGCGGCTCTGATCACTCTGCCTTTTATCGT 1020
Query 1024 TGTGAGTTCGATGGTTACCAAGACACCCTTTATGTTCATTCAGCCAAACAATTTTATCGA 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 TGTGAGTTCGATGGTTACCAAGACACCCTTTATGTTCATTCAGCCAAACAATTCTATCGA 1080
Query 1084 GAATGCGATATATATGGTACAATCGATTTCATATTCGGCAATGCGGCTGTTGTGTTCCAG 1143
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 GAATGCGATATATATGGTACTATCGATTTCATATTCGGCAACGCGGCTGTTGTGTTCCAG 1140
Query 1144 AATAGTAGTCTTTATGCTCGTAAACCTAATCCTGGACATAAAATTGCATTCACCGCTCAA 1203
||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1141 AATTGTAGTCTTTATGCTCGTAAACCAAATCCTGAACATAAAATTGCATTCACCGCTCAA 1200
Query 1204 AGCCGCAATCAGTCGGACCAGCCCACGGGTATATCTAT-ACTTAATTGTAGAATCTTGGC 1262
|||||||||||||| ||||||||||| ||||||||||| | || || |||||||||||||
Sbjct 1201 AGCCGCAATCAGTCAGACCAGCCCACCGGTATATCTATCA-TTCATAGTAGAATCTTGGC 1259
Query 1263 CGCACCTGATTTGATCCCTGTGAAAGAAAACTTCAAGGCGTACTTAGGTCGACCATGGAG 1322
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1260 CGCACCTGATTTGATCCCTGTGAAAGAAAATTTCACGGCGTACTTAGGTCGACCATGGAG 1319
Query 1323 AAAATATTCTAGGACGGTTATCATAAAATCATTTATTGATGATCTTATACATCCCGCTGG 1382
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1320 AAAATATTCTAGGACGGTTATCATAAAATCATTTATTGATGATCTCATACATCCTGCTGG 1379
Query 1383 ATGGTTGGAGGGGAAAAAAGATTTTGCACTTGAAACTTTATATTATGGAGAGTATATGAA 1442
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1380 ATGGTTGGAGTGGAAAAAAGATTTTGCACTTGAAACCTTATATTATGGAGAGTATATGAA 1439
Query 1443 TGAAGGGCCTGGGGCAAACATGGCAAAGCGAGTCACATGGCCTGGTTTTAGACGCATCGA 1502
|||||||||||||||||||||| |||| || ||||||||||| |||||| ||||||||||
Sbjct 1440 TGAAGGGCCTGGGGCAAACATGACAAATCGGGTCACATGGCCCGGTTTTCGACGCATCGA 1499
Query 1503 AAACCAAACGGAGGCTACCCAATTCACAGTCGGTCCATTTATCGACGGTAGCACATGGCT 1562
|||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1500 AAACGAAACGGAGGCAACCCAATTCACCGTCGGTCCATTTATCGATGGTAGCACATGGCT 1559
Query 1563 AAATTCAACTGGCATCCCTTTTAGTCTTGGTTTCTAA 1599
|||||||| ||||||||||||||||| |||||||||
Sbjct 1560 TAATTCAACCGGCATCCCTTTTAGTCTCGGTTTCTAA 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5