BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02320.1
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943502 jgi|Araly1|943502|scaffold_604046.1 1964 0.0
> Ahg943502 jgi|Araly1|943502|scaffold_604046.1
Length=1402
Score = 1964 bits (1063), Expect = 0.0
Identities = 1265/1361 (93%), Gaps = 19/1361 (1%)
Strand=Plus/Plus
Query 202 TCTAACCTAAGCCATCGCGATCTTTGCGCATTCGATGACTGTCTCGAGCTACTCGATGAC 261
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 36 TCTAACCTAAGCCATCGCGATCGCTGCGCATTCGATGACTGCCTCGAGCTACTCGATGAC 95
Query 262 ACCGTCTTCGATCTCACCACCGCGA-TATCCAAGCTCCGATCTCATTCTCCGGAGCTCCA 320
|||||||| |||||||||||||| | |||| |||| || ||||||||||||||||||||
Sbjct 96 ACCGTCTTTGATCTCACCACCGC-AGTATCTGAGCTTCGGTCTCATTCTCCGGAGCTCCA 154
Query 321 TAACGTCAAAATGTTACTCAGCGCCGCGATGACAAATACACGAACGTGTCTCGATGGTTT 380
||||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 155 TAACGTCAAAATGTTTCTCAGCGCCGCGATGACGAATACAAGAACATGTCTCGATGGTTT 214
Query 381 CGCTTCTAGCGACAACGATGAGAATTTGAATAATAATGATAATAAAACATATGGAGTGGC 440
||||||||| ||||||| | | ||||||| | ||||||| || |||||||||||
Sbjct 215 TGCTTCTAGCAACAACGA--CG-A---GAATAAT-A--ATAATAAGACGTATGGAGTGGC 265
Query 441 TGAGAGCTTGAAGGAGAGTCTTTTCAATATCTCTAGCCACGTCAGCGACTCGTTGGCTAT 500
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 266 TGAGAGCTTGAAAGAGAGTCTTTTCAATATCTCTAGCCACGTCAGCGACTCGTTAGCTAT 325
Query 501 GCTTGA-GAATATTCCAGGGCATATTCCGGGGAAAGTAAAGGAGGACGTTGGGTTTCCGA 559
|||||| ||| ||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 326 GCTTGAGGAA-ATTCCAGGGAATATTCCGGGGAAACTAGAGGAGGACGTTGGGTTTCCGA 384
Query 560 TGTGGGTCTCAGGGAGTGACCGGAATCTACTTCAAGACCCGGTGGATGAGACTAAGGTTA 619
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 385 TGTGGGTCTCAGGGAGTGACCGGAACCTACTTCAAGATCCGGTGGATGAGACTAAGGTTA 444
Query 620 ATCTCGTGGTGGCTCAAAATGGGACTGGAAACTACACGACCATTGGCGAGGCCATATCCG 679
|||||||||||||||||||||| || | |||||||| ||||| ||||||||| |||| |
Sbjct 445 ATCTCGTGGTGGCTCAAAATGGTACCAGCAACTACACAACCATCGGCGAGGCCGTATCTG 504
Query 680 CCGCACCCAACTCGAGTGAAACCAGGTTTGTGATATATATAAAATGTGGGGAATATTTTG 739
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 CCGCTCCTAACTCGAGTGAAACCAGGTTTGTGATATATATAAAATGTGGGGAATATTTTG 564
Query 740 AAAACATTGAAATACCGAGGGAAAAGACAATGATAATGTTCATTGGAGATGGAATCGGAC 799
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 565 AAAACATTGAAATACCGAGGGAAAAGACAATGATAATGTTTATTGGGGATGGAATCGGAC 624
Query 800 GGACAGTAATAAAAGCTAACCGCAGCTATGCAGATGGATGGACAGCCTTTCACTCTGCTA 859
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 625 GGACAGTAATAAAAGCTAACCGCAGCTTTGCAGATGGATGGACAGCATTTCACTCTGCGA 684
Query 860 CCGTTGGCGTGAGAGGTAGTGGCTTCATAGCTAAGGACTTATCATTCGTGAATTATGCCG 919
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 685 CCGTTGGCGTGAGAGGTAGTGGCTTCATAGCTAAGGACTTGTCGTTCGTGAATTATGCCG 744
Query 920 GACCGGAAAAACACCAAGCTGTGGCATTACGAAGTAGCTCTGACCTCTCTGCTTACTACC 979
||| || | ||||| ||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 745 GACTGGCTAGTCACCAGGCTGTGGCATTACGAAGCAGCTCTGACCTCTCTGCTTTCTACC 804
Query 980 GATGCAGCTTTGAAAGCTACCAAGACAC-CATTTACGTCCATTCACACAAACAGTTTTAT 1038
|||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||
Sbjct 805 GATGCAGCTTTGAAAGCTTCCAAGACACTC-TTTATGTCCATTCACACAAACAGTTTTAT 863
Query 1039 CGAGAATGTGATATATATGGCACAGTCGATTTCATATTTGGTGACGCATCGGTTGTGTTC 1098
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 864 CGAGAGTGTGATATATATGGCACGGTCGATTTCATATTTGGTGATGCATCGGTTGTGTTC 923
Query 1099 CAGAATTGTAGTCTCTATGCTCGTAGACCAAATCCTAACCAGAAAATCATATATACCGCT 1158
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 924 CAGAATTGTAGTCTCTATGCTCGTAGACCAAATCCTAACCAAAAAATCATATATACCGCT 983
Query 1159 CAAGGCCGGGAAAACTCACGTGAACCCACTGGTATTTCTATAATTAGTAGCAGGATTTTG 1218
|||||||||||||||||| || ||||||| |||||||||||||| ||||||| |||||||
Sbjct 984 CAAGGCCGGGAAAACTCAAGTCAACCCACGGGTATTTCTATAATCAGTAGCAAGATTTTG 1043
Query 1219 GCGGCACCTGACTTGATCCCTGTGCAAGCCAACTTCAAAGCATATTTAGGTCGTCCGTGG 1278
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1044 GCCGCACCAGACTTGATCCCTGTGCAAGCCAACTTTAAAGCATATTTAGGTCGTCCGTGG 1103
Query 1279 CAACTATATTCTAGGACGGTTATTATGAAATCGTTTATTGATGA-CTTGGTGGATCCTGC 1337
||||||||||||||||||||||| |||||||||||||||| || || ||||||||||||
Sbjct 1104 CAACTATATTCTAGGACGGTTATCATGAAATCGTTTATTGGCGATCT-GGTGGATCCTGC 1162
Query 1338 CGGATGGTTGAAGTGGAAAGATGATTTTGCTCTTGAAACTTTGTATTATGGAGAGTACAT 1397
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1163 CGGATGGTTGAAGTGGAAAGATGATTTTGCCCTTGAAACTTTATATTATGGAGAGTACAT 1222
Query 1398 GAATGAAGGACCCGGTTCGAACATGACAAACCGGGTCCAATGGCCTGGTTTTAAGCGTAT 1457
||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1223 GAATGAAGGTCCCGGGTCGAACATGACAAACAGGGTCCAATGGCCTGGTTTTAAGCGTAT 1282
Query 1458 CGAAACCGTAGAAGAAGCAAGTCAATTCTCTGTTGGTCCATTTATCGATGGTAACAAATG 1517
|||||||| ||| ||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1283 CGAAACCGCAGAGGAAGCAACTCAATTCTCTGTTGGTCCATTTATCGAAGGTAACAAATG 1342
Query 1518 GCTTAATTCTAC-GAGAATTCCTTTTACTCTTGATCTCTGA 1557
|||||| ||||| | |||||||||||||| |||||||||||
Sbjct 1343 GCTTAACTCTACCG-GAATTCCTTTTACTATTGATCTCTGA 1382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5