BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02330.1
Length=1897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490338 jgi|Araly1|490338|fgenesh2_kg.6__3472__AT4G02330.1 2850 0.0
Ahg333607 jgi|Araly1|333607|fgenesh1_pg.C_scaffold_1000172 501 7e-141
> Ahg490338 jgi|Araly1|490338|fgenesh2_kg.6__3472__AT4G02330.1
Length=1849
Score = 2850 bits (1543), Expect = 0.0
Identities = 1755/1857 (95%), Gaps = 16/1857 (1%)
Strand=Plus/Plus
Query 1 AAACTTTTCcaaaatcataccaaaaaaacatttagtaacatcaaaatttacaaaaaacaa 60
||||||||||||| |||||||||||||||||||| ||||| |||||| ||| | || ||
Sbjct 1 AAACTTTTCCAAATTCATACCAAAAAAACATTTAATAACACCAAAATCTAC--AGAA-AA 57
Query 61 aaaaacaTGCTATCTCTC-AAACTCTTCCTCGTAACactcttcttatctcttcaaacact 119
| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 58 ATAAA-ATGCTATCTC-CGAAACTCTTCCTCGTAACACTCTTCTTATCTCTTCAAACACT 115
Query 120 cttcattgcttctc-aaa-c-tct-tcttc--cttcaaactcttcatcaaCCATATGCAA 173
|||||||||||||| ||| | ||| |||| |||||||||||||||| ||||| |||||
Sbjct 116 CTTCATTGCTTCTCAAAATCTTCTCCCTTCTTCTTCAAACTCTTCATCTACCATCTGCAA 175
Query 174 AACAACACCCGATCCAAAATTCTGCAAATCAGTGTTCCCACAAACATCTCAAGGCGACGT 233
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 176 AACGACACCGGATCCAAAATTTTGCAAATCAGTGTTCCCACAAACATCTCAAGGCGACGT 235
Query 234 TCGCGAATACGGCCGCTTCTCCCTCCGCAAATCGCTAACGCAATCGCGGAAATTCACACG 293
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 236 TCGCGAATATGGCCGCTTCTCCCTCCGCAAATCGCTAACGCAATCGCAAAAATTCACACG 295
Query 294 CACCATTGACAGATACCTCAAACGCAACAATGCACTATTATCTCAATCCGCCGTTGGAGC 353
||| ||||||| ||||||||||||||||||||| ||| | || |||||||||||||||||
Sbjct 296 CACGATTGACAAATACCTCAAACGCAACAATGCCCTACTCTCCCAATCCGCCGTTGGAGC 355
Query 354 TCTCCAAGACTGCCGTTACCTAGCAAGCCTCACAACAGACTATCTCATAACATCGTTCGA 413
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||
Sbjct 356 TCTCCAAGACTGCCGTTACCTCGCAAGCCTCACAACAGACTATCTCTTAACGTCGTTTGA 415
Query 414 GACGGTCAATATCACTACATCATCCAAAACGTTGTCGTTTTCCAAAGCCGACGAAATCCA 473
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CACCGTCAACATCACTACATCATCCAAAACGTTGTCGTTTTCCAAAGCCGACGAAATCCA 475
Query 474 AACACTTCTCTCCGCGGCTTTGACTAACGAGCAAACATGTCTTGATGGAATCAACACCGC 533
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 476 AACACTTCTCTCCGCCGCGTTGACTAACGAGCAAACATGTCTTGACGGAATCAACACCGC 535
Query 534 CGCTTCCTCTTCATGGACTATACGAAACGGTGTCGCATTGCCTCTAATCAACGACACGAA 593
|||||| |||| ||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 536 AGCTTCCACTTCTTGGACCATACGAAACGGCGTCGCATTGCCTCTAATCAACGACACAAA 595
Query 594 GCTCTTTAGTGTCTCGCTCGCATTATTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAACA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GCTCTTTAGTGTCTCGCTCGCATTATTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAACA 655
Query 654 AGTAGCCAGTTACTCTTGGGCCCATCCAAAGAACACTCACAGTCACACAAAACCATTCCG 713
| ||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 656 AATAGCCGGTTACTCTTGGGCTCATCCGAAGAATACTCACAGTCACACAAAACCATTCCG 715
Query 714 TCATTTCCGTAACGGAGCTTTACCGTTAAAGATGACGGAACACACACGCGCCGTTTACGA 773
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TCAGTTCCGTAACGGAGCTTTACCGTTAAAGATGACGGAACACACACGCGCCGTTTACGA 775
Query 774 GTCTTTAAGCAGGAGGAAACTCGCTGACGACGATAATGACGTAAACACGGTGCTTGTAAG 833
||||||||| ||||||||||| || |||||||| ||||| ||||||||||| ||||| ||
Sbjct 776 GTCTTTAAGTAGGAGGAAACTGGCAGACGACGACAATGATGTAAACACGGTTCTTGTGAG 835
Query 834 CGACATCGTAACGGTGAACCAAAACGGAACGGGGAATTTCACGACCATAACGGAAGCTGT 893
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CGACATGGTAACGGTGAACCAAAACGGAACGGGGAATTTCACGACCATAACGGAAGCTGT 895
Query 894 TAATTCGGCGCCGAATAAAACTGACGGTACCGCCGGTTATTTCGTTATCTACGTGACGTC 953
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TACGGCGGCGCCGAATAAAACTGACGGTACCGCCGGTTATTTCGTTATCTACGTGACGTC 955
Query 954 AGGTGTTTATGAGGAAAACGTAGTGATTGCCAAA-AACAAAAGATATCTAATGATGATTG 1012
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 956 AGGTGTTTATGAGGAAAACGTAGTGATTG-CAAAGAACAAAAGATATCTAATGATGATTG 1014
Query 1013 GTGACGGAATAAACCGTACGGTGGTTACCGGTAACCGGAATGTCGTCGACGGTTGGACCA 1072
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1015 GTGACGGAATAAACCGTACGGTGGTTACCGGTAACCGGAATGTTGTCGACGGTTGGACCA 1074
Query 1073 CTTTCAACTCCGCCACTTTTGCTGTTACATCGCCGAACTTCGTTGCCGTGAACATGACTT 1132
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1075 CTTTCAACTCCGCCACTTTTGCCGTGACATCGCCGAACTTCGTTGCCGTGAACATGACTT 1134
Query 1133 TCCGAAATACCGCTGGACCAGAGAAGCACCAGGCCGTAGCTATGAGGAGCAGTGCAGATC 1192
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1135 TCCGAAATACCGCTGGACCAGAGAAGCACCAGGCCGTGGCTATGAGGAGCAGTGCAGATC 1194
Query 1193 TTTCAATCTTCTATAGTTGCAGTTTCGAAGCTTATCAAGACACTTTATACACACATTCAC 1252
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TCTCGATCTTCTATAGTTGCAGTTTCGAAGCTTATCAAGACACTTTATACACACATTCAC 1254
Query 1253 TAAGACAGTTCTATAGAGAATGTGACATTTATGGAACAGTCGATTTCATATTCGGCAATG 1312
|| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1255 TACGACAATTCTATAGAGAATGTGACATTTATGGTACAGTCGATTTCATATTCGGCAATG 1314
Query 1313 CAGCTGTTGTGTTCCAAGACTGTAATCTCTATCCAAGACAACCGATGCAGAACCAGTTCA 1372
||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 1315 CAGCTGTTGTGTTCCAAAACTGTAATCTATATCCAAGACAGCCGATGCAGAACCAGTTTA 1374
Query 1373 ACGCTATTACAGCTCAAGGTCGTACTGATCCGAATCAAAACACGGGAATTTCGATTCACA 1432
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1375 ACGCTATTACAGCTCAAGGTCGTACTGATCCGAATCAAAACACAGGAATTTCTATCCACA 1434
Query 1433 ATTGTACGATTAAACCGGCAGATGATTTGGTTTCGAGTAACTATACGGTTAAAACGTATT 1492
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1435 ATTGTACGATTAAACCAGCAGATGATTTGGTTTCGAGCAACTATACGGTTAAAACGTATT 1494
Query 1493 TGGGACGACCATGGAAGGAGTATTCACGTACGGTTTTTATGCAATCGTACATAGACGAGG 1552
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1495 TGGGACGACCATGGAAGGAGTATTCACGGACAGTTTTTATGCAATCGTACATAGACGAGG 1554
Query 1553 TTGTTGAACCGGTTGGTTGGAGAGAATGGAACGGAGATTTCGCATTGAGTACGTTGTACT 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TTGTTGAACCGGTTGGTTGGAGAGAATGGAACGGAGATTTCGCATTGAGTACGTTGTACT 1614
Query 1613 ATGCTGAGTATAACAATACCGGTTCCGGTTCAAGTACTACAGATCGAGTGGTTTGGCCCG 1672
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |
Sbjct 1615 ATGCTGAGTATAACAATACCGGATCCGGTTCAAATACTACAGACCGAGTGGTTTGGCCTG 1674
Query 1673 GTTATCATGTGATTAATTCTACGGATGCGAATAATTTCACAGTCGAGAATTTCTTGTTAG 1732
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1675 GTTATCACGTGATTAATTCTACCGATGCGAATAATTTCACGGTCGAGAATTTCTTGTTAG 1734
Query 1733 GAGATGGTTGGATGGTTCAGAGTGGTGTACCTTATATTAGTGGTTTACTTTCGTAATTTC 1792
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1735 GAGATGGTTGGATGGTTCAAAGTGGTGTACCGTATATTAGCGGTTTACTTTCGTAATTTC 1794
Query 1793 TTGTATCTGATTATTTGTTTTAGCTATTATTATGGGTAAATTTTGGTCTTAATTTTG 1849
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1795 TTGTATTTGATTATTTGTTTTAGCTATTATTATGC--AAATTTTGGTCTTAATTTTG 1849
> Ahg333607 jgi|Araly1|333607|fgenesh1_pg.C_scaffold_1000172
Length=1587
Score = 501 bits (271), Expect = 7e-141
Identities = 819/1072 (76%), Gaps = 84/1072 (8%)
Strand=Plus/Plus
Query 148 tcaaactcttcatcaaCCATATGCAAAACAACACCCGATCCAAAAT-TCTGCAAATCAGT 206
|||||||| | ||||| || |||||||| ||||| |||||||||| | |||||||| ||
Sbjct 76 TCAAACTC-T--TCAACAATCTGCAAAACGACACCGGATCCAAAATAT-TGCAAATCCGT 131
Query 207 GTTCCCACAAACATCTCAAGGCGACGTTC-GCGAATACGGCCGCTTCTCCCTCCGCAAAT 265
||||||| | | | |||||| | || | | |||||||||||||||| |||||||||
Sbjct 132 TTTCCCAC--ATAGC-CAAGGCAATGTCCAAC-AATACGGCCGCTTCTCTATCCGCAAAT 187
Query 266 CGCTAACGCAATCGCGGAAATTCACACGCACCATTGACAGATACCTCAAACGCAACAATG 325
||||| |||||||||| ||||||| |||||| | || ||||| ||||||||||| |
Sbjct 188 CGCTATCGCAATCGCGAAAATTCATTCGCACCGTCGATAGATATATCAAACGCAACGCT- 246
Query 326 CACTATTATCTCAATCC-GCCG-T-T-GGAGCTCTCCAAGACTGCCGTTACCTAGCAAGC 381
|| | ||||||||| || |||| | | ||||||||||||| ||||||| || || |
Sbjct 247 CA-T-TTATCTCAA-CCTGCCGTTATCAGAGCTCTCCAAGATTGCCGTTTTCTCGCTGGT 303
Query 382 CTCACAACAGACTATCTCATAACATCGTTCGAGA-CGGT--C-A-A--T-ATCACTA-CA 432
| |||| || || || |||| |||||||| | || | | | | | | || | |
Sbjct 304 TTAACAATGGATTACCTTTTAACGTCGTTCGAAACCGTTAACGACACGTCAGCAAAAGCC 363
Query 433 TCATCCAAAACGTTGTCGTTTTCC-AAAGCCGACGAAATCCAAACACTTCTCTCCGCGGC 491
|| | ||||||| ||||| ||||| |||||||| || |||||||| ||||| ||||||||
Sbjct 364 TCTTTCAAAACGCTGTCG-TTTCCAAAAGCCGATGACATCCAAACGCTTCTTTCCGCGGC 422
Query 492 TTTGACTAACGAGCAAACATGTCTTGATGGAATCAACACCGCCGCTTCCTCTT----CA- 546
|||||||||||||| || |||||||| ||| | | |||||||||||| |||| ||
Sbjct 423 GTTGACTAACGAGCAGACGTGTCTTGAAGGACTTACCACCGCCGCTTCTTCTTCCGCCAC 482
Query 547 -TGGACTATACGAAACGGTGTCGCATTGCCTCTAATCAACGACACGAAGCTCTTTAGTGT 605
|||||| || ||||||| ||||| || ||||| | || |||||||||||||| | ||
Sbjct 483 GTGGACTGTAAGAAACGGCGTCGCTTTACCTCTCGTTAATGACACGAAGCTCTTGGGCGT 542
Query 606 CTCGCTCGCAT-TATTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAACAAGTAGCCAG-T 663
||| ||||| | | |||||||||||||||||||||||||||||||||| | |||| | |
Sbjct 543 CTCACTCGC-TCTCTTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAAC--G-AGCCGGGT 598
Query 664 TACTCTTGGGCCCATCCAAAGAACAC--T-CA-C-AGTCACACAAAACCATTCCGTCAT- 717
| |||||||||| || | || | | | || | | ||||| ||||| | ||||| |
Sbjct 599 TTG-CTTGGGCCCAACCGA-GATC-CGGTTCATCGACCCACACTAAACCGTACCGTC-TG 654
Query 718 TTCCGTAACGGAGCTTTACCGTTAAAGATGACGGAACACACACGCGCCGTTTACGAGTCT 777
||||||||||||||| |||||||||||||||||||| | ||| ||||||||||||||
Sbjct 655 TTCCGTAACGGAGCTCTACCGTTAAAGATGACGGAAAAAACAAAAGCCGTTTACGAGTCA 714
Query 778 TTAAGCAGGAGGAAACTCGCTGACG---ACGATAA---TGACG-TAA--AC--A--C--G 822
| ||||| || |||||| | || | ||| ||| ||| | | | || | | |
Sbjct 715 CTCAGCAGAAGAAAACTCTCCGAAGGTGACGGTAACGGTGATGGTGACGACGGAAGCATG 774
Query 823 GTGCTTG-TAAGCGACATCGTAACGGTGAACCAAAACGGAACGGGGAATTTCACGACCAT 881
|| || | ||||||| ||||| || |||| |||| | ||||| || |||||||| | |||
Sbjct 775 GTTCT-GATAAGCGATATCGTCACCGTGAGCCAAGATGGAACAGGAAATTTCACCAACAT 833
Query 882 AACGGAAGCTGTTAATT-CGGCGCCGAATAAAACTGACGGTACCGCCGGTTAT-TTCGTT 939
|| | |||||| | ||||||| ||||| || ||||| | |||||||| | ||| ||
Sbjct 834 CACCGCAGCTGT-AGCGGCGGCGCCAAATAACACAGACGGAAGCGCCGGTT-TCTTC-TT 890
Query 940 -ATCTACGTGACGTCAGGTGTTTATGAGGAAAACGTAGT-GATTGCCAAAAACAAAAGAT 997
|||||||||||| | || | || || || | | | ||| || || || ||||| |
Sbjct 891 GATCTACGTGACGGCGGGAATCTACGAAGAGTATATC-TCGATCGCGAAGAATAAAAGGT 949
Query 998 ATC-TAATGATGATTGGTGACGGAATAAACC-GTACGGTGGTTACCGGTAACCGGAAT-G 1054
| | | |||||||| || ||||| || || | | |||||||| ||||| ||| | || |
Sbjct 950 A-CATGATGATGATCGGCGACGGGATTAATCAG-ACGGTGGTCACCGGAAACAG-AAGCG 1006
Query 1055 TCGTCGACGGTTGGACCACTTTCAACTCCGCCACTTTTGCTGTTACATCGCCGAACTTCG 1114
|||||||||||||||| ||||| ||||||||||| |||||||| ||| | |||||||| |
Sbjct 1007 TCGTCGACGGTTGGACTACTTTTAACTCCGCCACATTTGCTGTGACAGCACCGAACTTTG 1066
Query 1115 TTGCCGTGAACATGACTTTCCGAAATACCGCTGGACCAGAGAAGCACCAGGC 1166
|||| |||||||| || ||||| || || || ||||| ||||| |||||||
Sbjct 1067 TTGCGGTGAACATAACATTCCGGAACACGGCGGGACCGGAGAA--ACCAGGC 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71266848395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5